Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0023236 Sechium edule HOM05D004481 ORTHO05D005350 5.5e-175 617.5 299 100.0
Sed0018810 Sechium edule HOM05D004481 ORTHO05D005350 5.8e-148 527.7 298 86.9
ClCG02G006560 Citrullus lanatus HOM05D004481 ORTHO05D005350 6.4e-147 524.2 301 85.0
CsaV3_7G008050 Cucumis sativus L. HOM05D004481 ORTHO05D005350 3.3e-143 511.9 301 83.7
MELO3C018500.2 Cucumis melo HOM05D004481 ORTHO05D005350 1.6e-142 509.6 301 84.4
GSVIVG01037896001 Vitis vinifera HOM05D004481 ORTHO05D005350 1.7e-123 446.4 295 72.9
TAR376G0836 Trochodendron aralioides HOM05D004481 ORTHO05D005350 7.8e-121 437.6 301 72.1
Ciclev10028970m.g Citrus clementina HOM05D004481 ORTHO05D005350 1.0e-120 437.2 301 70.4
TAR628G0287 Trochodendron aralioides HOM05D004481 ORTHO05D005350 9.6e-119 430.6 299 71.2
Duzib052G1089 Durio zibethinus HOM05D004481 ORTHO05D005350 6.2e-118 427.9 301 68.8
Sabra09G0071800 Salix brachista HOM05D004481 ORTHO05D005350 1.1e-117 427.2 295 70.5
Atru.chr5.2445 Acer truncatum HOM05D004481 ORTHO05D005350 1.4e-117 426.8 301 68.8
CiPaw.06G168400 Carya illinoinensis HOM05D004481 ORTHO05D005350 1.4e-117 426.8 301 70.8
RcHm_v2.0_Chr6g0254491 Rosa chinensis HOM05D004481 ORTHO05D005350 1.8e-117 426.4 301 69.8
FAN24G0473 Fragaria x ananassa HOM05D004481 ORTHO05D005350 2.4e-117 426.0 301 69.8
FvH4_2g04780 Fragaria vesca HOM05D004481 ORTHO05D005350 5.3e-117 424.9 295 70.8
MD10G1100100 Malus domestica HOM05D004481 ORTHO05D005350 1.2e-116 423.7 301 69.4
Prupe.8G137600 Prunus persica HOM05D004481 ORTHO05D005350 1.2e-116 423.7 295 69.5
Thecc.02G111500 Theobroma cacao HOM05D004481 ORTHO05D005350 1.2e-116 423.7 298 68.5
TWI79G1728 Tripterygium wilfordii HOM05D004481 ORTHO05D005350 2.6e-116 422.5 298 69.1
Gohir.D12G021400 Gossypium hirsutum HOM05D004481 ORTHO05D005350 5.8e-116 421.4 302 67.5
Gorai.008G021700 Gossypium raimondii HOM05D004481 ORTHO05D005350 5.8e-116 421.4 302 67.5
Manes.07G066500 Manihot esculenta HOM05D004481 ORTHO05D005350 9.9e-116 420.6 302 69.5
CANSAT25G3441 Cannabis sativa HOM05D004481 ORTHO05D005350 1.3e-115 420.2 301 68.8
Potri.001G298500 Populus trichocarpa HOM05D004481 ORTHO05D005350 1.3e-115 420.2 294 69.4
Cpa.g.sc106.118 Carica papaya HOM05D004481 ORTHO05D005350 2.2e-115 419.5 300 68.3
CANSAT25G2190 Cannabis sativa HOM05D004481 ORTHO05D005350 2.9e-115 419.1 301 68.4
Gohir.A12G021100 Gossypium hirsutum HOM05D004481 ORTHO05D005350 4.9e-115 418.3 296 68.2
CSS0002878 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 6.4e-115 417.9 300 69.7
CSS0015264 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 6.4e-115 417.9 300 69.7
FAN27G3202 Fragaria x ananassa HOM05D004481 ORTHO05D005350 6.4e-115 417.9 295 69.5
Hma1.2p1_1023F.1_g248990 Hydrangea macrophylla HOM05D004481 ORTHO05D005350 8.4e-115 417.5 301 69.1
Rhsim11G0156300 Rhododendron simsii HOM05D004481 ORTHO05D005350 8.4e-115 417.5 299 69.6
Potri.009G093200 Populus trichocarpa HOM05D004481 ORTHO05D005350 4.2e-114 415.2 295 68.5
Eucgr.I01088 Eucalyptus grandis HOM05D004481 ORTHO05D005350 3.5e-113 412.1 294 69.7
Sc18g0005550 Simmondsia chinensis HOM05D004481 ORTHO05D005350 1.0e-112 410.6 304 68.8
CSS0013759 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 1.3e-112 410.2 300 69.0
TWI75G0922 Tripterygium wilfordii HOM05D004481 ORTHO05D005350 3.0e-112 409.1 298 68.1
QL11p032653 Quercus lobata HOM05D004481 ORTHO05D005350 1.9e-111 406.4 253 76.7
PGR142G4205 Punica granatum HOM05D004481 ORTHO05D005350 3.3e-111 405.6 294 68.0
Actinidia27975 Actinidia chinensis HOM05D004481 ORTHO05D005350 7.4e-111 404.4 302 67.5
Nitab4.5_0001480g0100 Nicotiana tabacum HOM05D004481 ORTHO05D005350 9.6e-111 404.1 294 68.7
PSO170G4403 Papaver somniferum HOM05D004481 ORTHO05D005350 1.3e-110 403.7 302 66.9
Cfa004607 Carpinus fangiana HOM05D004481 ORTHO05D005350 1.6e-110 403.3 253 76.7
PSO210G1902 Papaver somniferum HOM05D004481 ORTHO05D005350 1.6e-110 403.3 301 66.8
AUR62010332 Chenopodium quinoa HOM05D004481 ORTHO05D005350 2.1e-110 402.9 294 65.6
Glyma.20G130700 Glycine max HOM05D004481 ORTHO05D005350 2.1e-110 402.9 295 66.4
Lj5g0012751 Lotus japonicus HOM05D004481 ORTHO05D005350 1.1e-109 400.6 302 66.9
Solyc10g049850.3 Solanum lycopersicum HOM05D004481 ORTHO05D005350 1.8e-109 399.8 294 68.0
MSTRG.20195 Avicennia marina HOM05D004481 ORTHO05D005350 5.3e-109 398.3 294 67.3
PGSC0003DMG400025761 Solanum tuberosum HOM05D004481 ORTHO05D005350 5.3e-109 398.3 294 68.7
THA.LOC104819549 Tarenaya hassleriana HOM05D004481 ORTHO05D005350 5.3e-109 398.3 301 65.4
Cc02_g19430 Coffea canephora HOM05D004481 ORTHO05D005350 6.9e-109 397.9 296 67.9
Glyma.10G260500 Glycine max HOM05D004481 ORTHO05D005350 9.0e-109 397.5 296 65.2
Nn1g04655 Nelumbo nucifera HOM05D004481 ORTHO05D005350 9.0e-109 397.5 298 66.4
CAN.G606.21 Capsicum annuum HOM05D004481 ORTHO05D005350 1.5e-108 396.7 294 68.0
HanXRQChr04g0105981 Helianthus annuus HOM05D004481 ORTHO05D005350 2.0e-108 396.4 305 65.6
Nitab4.5_0002647g0020 Nicotiana tabacum HOM05D004481 ORTHO05D005350 2.0e-108 396.4 296 66.9
Nitab4.5_0003699g0050 Nicotiana tabacum HOM05D004481 ORTHO05D005350 2.6e-108 396.0 304 65.8
Lalb_Chr02g0145211 Lupinus albus HOM05D004481 ORTHO05D005350 4.5e-108 395.2 296 66.9
Psat6g216600 Pisum sativum HOM05D004481 ORTHO05D005350 4.5e-108 395.2 295 65.8
arahy.Tifrunner.gnm1.ann1.5RC8JY Arachis hypogaea HOM05D004481 ORTHO05D005350 5.8e-108 394.8 295 64.4
Lalb_Chr21g0308241 Lupinus albus HOM05D004481 ORTHO05D005350 5.8e-108 394.8 296 67.2
Peaxi162Scf00016g02527 Petunia axillaris HOM05D004481 ORTHO05D005350 5.8e-108 394.8 332 62.3
Medtr1g107045 Medicago truncatula HOM05D004481 ORTHO05D005350 7.6e-108 394.4 295 65.4
TPR.G27083 Trifolium pratense HOM05D004481 ORTHO05D005350 7.6e-108 394.4 295 65.4
Nn5g30459 Nelumbo nucifera HOM05D004481 ORTHO05D005350 1.3e-107 393.7 296 66.2
THA.LOC104807234 Tarenaya hassleriana HOM05D004481 ORTHO05D005350 1.7e-107 393.3 296 65.9
Migut.B00402 Erythranthe guttata HOM05D004481 ORTHO05D005350 2.2e-107 392.9 294 66.7
Aqoxy5G01130 Aquilegia oxysepala HOM05D004481 ORTHO05D005350 2.9e-107 392.5 293 66.9
Aa31LG2G16850 Aethionema arabicum HOM05D004481 ORTHO05D005350 3.8e-107 392.1 301 66.1
ECA234G2632 Erigeron canadensis HOM05D004481 ORTHO05D005350 3.8e-107 392.1 301 66.1
SGA_v2.0_scaffold225G42995 Striga asiatica HOM05D004481 ORTHO05D005350 3.8e-107 392.1 294 66.0
Lj5A215G63 Lonicera japonica HOM05D004481 ORTHO05D005350 6.4e-107 391.3 335 61.5
Thhalv10025895m.g Eutrema salsugineum HOM05D004481 ORTHO05D005350 1.4e-106 390.2 302 64.6
Carub.0007s0609 Capsella rubella HOM05D004481 ORTHO05D005350 5.5e-106 388.3 295 65.1
Ca_11058_v3 Cicer arietinum L. HOM05D004481 ORTHO05D005350 7.1e-106 387.9 295 64.1
BolC1t00437H Brassica oleracea HOM05D004481 ORTHO05D005350 9.3e-106 387.5 294 65.6
Sp7g32060 Schrenkiella parvula HOM05D004481 ORTHO05D005350 9.3e-106 387.5 301 63.8
Oeu037260.1 Olea europaea HOM05D004481 ORTHO05D005350 1.2e-105 387.1 294 65.3
A01p04140 Brassica napus HOM05D004481 ORTHO05D005350 1.6e-105 386.7 294 65.6
BcaNung04989 Brassica carinata HOM05D004481 ORTHO05D005350 2.1e-105 386.3 301 64.1
C01p04510 Brassica napus HOM05D004481 ORTHO05D005350 2.7e-105 386.0 294 65.3
Phvul.007G041700 Phaseolus vulgaris HOM05D004481 ORTHO05D005350 2.7e-105 386.0 296 62.8
CARHR242510 Cardamine hirsuta HOM05D004481 ORTHO05D005350 1.0e-104 384.0 301 64.1
VMungo0720G1503 Vigna mungo HOM05D004481 ORTHO05D005350 2.3e-104 382.9 295 62.7
vmacro01990 Vaccinium macrocarpon HOM05D004481 ORTHO05D005350 3.0e-104 382.5 296 64.2
CSS0003948 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 5.1e-104 381.7 302 64.9
unitig_0.g879 Utricularia gibba HOM05D004481 ORTHO05D005350 7.4e-103 377.9 294 64.6
AL7G17000 Arabidopsis lyrata HOM05D004481 ORTHO05D005350 9.6e-103 377.5 301 62.5
EL10Ac9g22252 Beta vulgaris HOM05D004481 ORTHO05D005350 1.3e-102 377.1 295 64.1
AT4G34270 Arabidopsis thaliana HOM05D004481 ORTHO05D005350 2.8e-102 375.9 301 62.8
BraA01t00403Z Brassica rapa HOM05D004481 ORTHO05D005350 2.8e-102 375.9 310 62.6
Zm00001eb214380 Zea mays HOM05D004481 ORTHO05D005350 1.4e-101 373.6 294 62.2
Hund06305 Selenicereus undatus HOM05D004481 ORTHO05D005350 4.0e-101 372.1 298 63.4
FAN15G0583 Fragaria x ananassa HOM05D004481 ORTHO05D005350 1.5e-100 370.2 301 63.5
SalBow6G4388 Salvia bowleyana HOM05D004481 ORTHO05D005350 3.4e-100 369.0 334 58.7
SalBow6G4779 Salvia bowleyana HOM05D004481 ORTHO05D005350 3.4e-100 369.0 334 58.7
Lsat_1_v5_gn_5_116421 Lactuca sativa HOM05D004481 ORTHO05D005350 1.3e-99 367.1 256 71.9
Haze_10202 Corylus avellana HOM05D004481 ORTHO05D005350 4.9e-99 365.2 304 63.2
Rhsim11G0157800 Rhododendron simsii HOM05D004481 ORTHO05D005350 6.5e-99 364.8 299 63.9
arahy.Tifrunner.gnm1.ann1.PGW4NS Arachis hypogaea HOM05D004481 ORTHO05D005350 1.4e-98 363.6 258 66.7
DCAR_021976 Daucus carota HOM05D004481 ORTHO05D005350 5.5e-98 361.7 254 70.1
Os03g0760600 Oryza sativa ssp. japonica HOM05D004481 ORTHO05D005350 5.5e-98 361.7 292 62.3
Dinv42206 Davidia involucrata HOM05D002228 ORTHO05D005350 2.1e-97 359.8 251 70.1
PGSC0003DMG400023263 Solanum tuberosum HOM05D004481 ORTHO05D005350 1.5e-95 353.6 257 67.7
CiPaw.05G013400 Carya illinoinensis HOM05D004481 ORTHO05D005350 1.1e-93 347.4 242 70.2
CDE02G3699 Ceratophyllum demersum HOM05D004481 ORTHO05D005350 3.4e-92 342.4 298 58.7
SEGI_10030 Sequoiadendron giganteum HOM05D004481 ORTHO05D005350 2.1e-89 333.2 291 59.1
SHI05271 Sapria himalayana HOM05D004481 ORTHO05D005350 3.0e-88 329.3 253 62.8
FAN20G2321 Fragaria x ananassa HOM05D004481 ORTHO05D005350 1.5e-87 327.0 295 59.3
Hma1.2p1_1023F.1_g249000 Hydrangea macrophylla HOM05D004481 ORTHO05D005350 5.3e-85 318.5 210 73.3
ATR0661G316 Amborella trichopoda HOM05D004481 ORTHO05D005350 9.1e-85 317.8 253 63.6
Mapoly0064s0080 Marchantia polymorpha HOM05D004481 ORTHO05D005350 4.5e-84 315.5 304 56.9
Ah.01g010900 Amaranthus hybridus HOM05D004481 ORTHO05D005350 1.1e-82 310.8 300 53.7
SMO361G0327 Selaginella moellendorffii HOM05D004481 ORTHO05D005350 2.7e-81 306.2 302 56.3
Pp3c10_18670 Physcomitrium patens HOM05D004481 ORTHO05D005350 3.1e-77 292.7 290 51.4
AUR62039053 Chenopodium quinoa HOM05D004481 ORTHO05D005350 3.8e-75 285.8 294 51.4
AagrBONN_evm.TU.Sc2ySwM_228.2403 Anthoceros agrestis HOM05D004481 ORTHO05D005350 1.1e-74 284.3 237 61.2
Actinidia00401 Actinidia chinensis HOM05D004481 ORTHO05D005350 3.2e-66 256.1 229 60.7
HPP92_010143 Vanilla planifolia HOM05D004481 ORTHO05D005350 7.5e-63 245.0 185 67.6
Sopen10g019880 Solanum pennellii HOM05D004481 ORTHO05D005350 5.0e-59 232.3 180 65.6
BcaNung04162 Brassica carinata HOM05D004481 ORTHO05D005350 7.2e-50 201.8 324 40.4
MCO13G563 Micromonas commoda HOM05D004481 ORTHO05D005350 6.8e-48 195.3 273 41.8
MD00G1108700 Malus domestica HOM05D004481 ORTHO05D005350 1.3e-46 191.0 130 71.5
CSS0037652 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 3.4e-39 166.4 152 57.9
PRCOL_00000955 Prasinoderma coloniale HOM05D004481 ORTHO05D005350 3.4e-39 166.4 282 34.8
BolC3t17849H Brassica oleracea HOM05D004481 ORTHO05D005350 2.0e-36 157.1 151 55.0
BcaC01g03137 Brassica carinata HOM05D004481 ORTHO05D005350 4.3e-34 149.4 152 52.6
C03p55700 Brassica napus HOM05D004481 ORTHO05D005350 7.3e-34 148.7 151 53.0
BcaC08g44162 Brassica carinata HOM05D004481 ORTHO05D005350 2.2e-30 137.1 138 53.6
CBR_g36716 Chara braunii HOM05D004481 ORTHO05D005350 2.4e-29 133.7 113 57.5
Cfa024874 Carpinus fangiana HOM05D004481 ORTHO05D005350 5.1e-27 125.9 270 31.1
BcaNung04988 Brassica carinata HOM05D004481 ORTHO05D005350 3.3e-26 123.2 108 59.3
Sopen01g049660 Solanum pennellii HOM05D004481 ORTHO05D005350 1.4e-24 117.9 82 69.5
Cre17.g734150 Chlamydomonas reinhardtii HOM05D004481 ORTHO05D005350 5.2e-24 115.9 394 25.4
Hund00159 Selenicereus undatus HOM05D004481 ORTHO05D005350 4.9e-22 109.4 99 53.5
Actinidia34390 Actinidia chinensis HOM05D004481 ORTHO05D005350 5.4e-21 105.9 74 66.2
Peaxi162Scf00003g02548 Petunia axillaris HOM05D004481 ORTHO05D005350 8.6e-19 98.6 177 39.0
Sopen01g049670 Solanum pennellii HOM05D004481 ORTHO05D005350 1.9e-18 97.4 76 65.8
Cfa005651 Carpinus fangiana HOM05D004481 ORTHO05D005350 5.6e-18 95.9 60 76.7
RcHm_v2.0_Chr6g0257521 Rosa chinensis HOM05D004481 ORTHO05D005350 6.8e-16 89.0 76 55.3
CSS0049178 Camellia sinensis var. sinensis HOM05D002228 ORTHO05D002347 8.9e-16 88.6 72 58.3
CSS0039068 Camellia sinensis var. sinensis HOM05D002228 ORTHO05D002347 5.8e-15 85.9 65 63.1
GSVIVG01003443001 Vitis vinifera HOM05D004481 ORTHO05D005350 7.6e-15 85.5 46 78.3
GSVIVG01003244001 Vitis vinifera HOM05D004481 ORTHO05D005350 1.3e-14 84.7 46 78.3
GSVIVG01030751001 Vitis vinifera HOM05D004481 ORTHO05D005350 1.3e-14 84.7 46 78.3
Cfa017289 Carpinus fangiana HOM05D004481 ORTHO05D005350 2.2e-14 84.0 56 71.4
Lsat_1_v5_gn_5_116621 Lactuca sativa HOM05D000552 ORTHO05D000469 2.4e-13 80.5 109 44.0
Atru.chr3.1909 Acer truncatum HOM05D004481 ORTHO05D005350 7.1e-13 79.0 92 44.6
MD00G1108800 Malus domestica HOM05D004481 ORTHO05D005350 2.1e-12 77.4 144 35.4
PRCOL_00004768 Prasinoderma coloniale HOM05D004481 ORTHO05D005350 2.1e-12 77.4 190 30.0
GSVIVG01030757001 Vitis vinifera HOM05D004481 ORTHO05D005350 2.1e-12 77.4 46 71.7
Atru.chr13.2259 Acer truncatum HOM05D004481 ORTHO05D005350 3.5e-12 76.6 88 46.6
Atru.chr7.688 Acer truncatum HOM05D004481 ORTHO05D005350 3.5e-12 76.6 88 46.6
Atru.chr12.2105 Acer truncatum HOM05D004481 ORTHO05D005350 7.8e-12 75.5 92 44.6
Solyc01g107420.2 Solanum lycopersicum HOM05D004481 ORTHO05D005350 2.3e-11 73.9 212 30.7
Cfa002003 Carpinus fangiana HOM05D004481 ORTHO05D005350 1.9e-10 70.9 45 77.8
VMungo0251G0056 Vigna mungo HOM05D005531 ORTHO05D006332 5.6e-10 69.3 127 39.4
QL04p003183 Quercus lobata HOM05D001978 ORTHO05D003036 7.6e-07 58.9 46 71.7
Cc02_g34080 Coffea canephora HOM05D004481 ORTHO05D005350 4.9e-06 56.2 40 70.0


User provided reference genes

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