Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0022492 Sechium edule HOM05D003794 ORTHO05D004464 5.4e-98 360.9 172 100.0
ClCG01G025820 Citrullus lanatus HOM05D003794 ORTHO05D004464 1.3e-72 276.6 176 75.0
CsaV3_6G053030 Cucumis sativus L. HOM05D003794 ORTHO05D004464 2.2e-59 232.6 166 66.3
MELO3C007006.2 Cucumis melo HOM05D003794 ORTHO05D004464 1.8e-53 213.0 145 67.6
Lj1A1144T44 Lonicera japonica HOM05D003794 ORTHO05D004464 1.8e-32 143.3 164 42.7
PGR042G1704 Punica granatum HOM05D003794 ORTHO05D004464 1.9e-31 139.8 153 43.8
Duzib235G0411 Durio zibethinus HOM05D003794 ORTHO05D004464 7.4e-31 137.9 158 43.0
RcHm_v2.0_Chr5g0019901 Rosa chinensis HOM05D003794 ORTHO05D004464 2.2e-30 136.3 146 43.8
CsaV3_1G046430 Cucumis sativus L. HOM05D003794 ORTHO05D004464 3.7e-30 135.6 162 45.7
ClCG01G009250 Citrullus lanatus HOM05D003794 ORTHO05D004464 4.8e-30 135.2 153 41.2
QL11p018066 Quercus lobata HOM05D003794 ORTHO05D004464 4.8e-30 135.2 147 41.5
Potri.015G120200 Populus trichocarpa HOM05D003794 ORTHO05D004464 1.1e-29 134.0 146 41.8
Migut.M01972 Erythranthe guttata HOM05D003794 ORTHO05D004464 1.4e-29 133.7 149 40.3
Dinv05961 Davidia involucrata HOM05D003794 ORTHO05D004464 2.4e-29 132.9 166 41.0
Sabra15G0137100 Salix brachista HOM05D003794 ORTHO05D004464 2.4e-29 132.9 151 43.7
Hma1.2p1_0040F.1_g025090 Hydrangea macrophylla HOM05D003794 ORTHO05D004464 4.1e-29 132.1 147 43.5
Atru.chr10.446 Acer truncatum HOM05D003794 ORTHO05D004464 5.3e-29 131.7 155 40.0
Ciclev10016974m.g Citrus clementina HOM05D003794 ORTHO05D004464 5.3e-29 131.7 168 41.7
TWI38G0727 Tripterygium wilfordii HOM05D003794 ORTHO05D004464 5.3e-29 131.7 143 43.4
FvH4_3g12160 Fragaria vesca HOM05D003794 ORTHO05D004464 6.9e-29 131.3 149 41.6
RcHm_v2.0_Chr5g0019921 Rosa chinensis HOM05D003794 ORTHO05D004464 9.0e-29 131.0 149 43.6
MD05G1254300 Malus domestica HOM05D003794 ORTHO05D004464 1.5e-28 130.2 153 40.5
GSVIVG01012092001 Vitis vinifera HOM05D003794 ORTHO05D004464 2.6e-28 129.4 158 40.5
BcaB07g32782 Brassica carinata HOM05D003794 ORTHO05D004464 3.4e-28 129.0 159 42.1
MSTRG.7585 Avicennia marina HOM05D003794 ORTHO05D004464 7.6e-28 127.9 148 40.5
ClCG01G009260 Citrullus lanatus HOM05D003794 ORTHO05D004464 7.6e-28 127.9 154 37.7
COL.COLO4_30982 Corchorus olitorius HOM05D003794 ORTHO05D004464 1.3e-27 127.1 157 41.4
Sp1g27020 Schrenkiella parvula HOM05D003794 ORTHO05D004464 1.3e-27 127.1 183 38.8
A09p35040 Brassica napus HOM05D003794 ORTHO05D004464 1.7e-27 126.7 175 38.9
BraA09t39035Z Brassica rapa HOM05D003794 ORTHO05D004464 2.2e-27 126.3 175 38.9
CANSAT35G2022 Cannabis sativa HOM05D003794 ORTHO05D004464 2.2e-27 126.3 154 42.2
Potri.012G120340 Populus trichocarpa HOM05D003794 ORTHO05D004464 2.2e-27 126.3 144 38.2
FAN16G1323 Fragaria x ananassa HOM05D003794 ORTHO05D004464 5.0e-27 125.2 141 44.0
GSVIVG01012089001 Vitis vinifera HOM05D003794 ORTHO05D004464 8.5e-27 124.4 155 40.0
Cfa000722 Carpinus fangiana HOM05D003794 ORTHO05D004464 1.4e-26 123.6 162 38.3
ClCG01G009280 Citrullus lanatus HOM05D003794 ORTHO05D004464 1.4e-26 123.6 162 38.9
Sed0017866 Sechium edule HOM05D003794 ORTHO05D004464 1.4e-26 123.6 150 40.0
GSVIVG01012087001 Vitis vinifera HOM05D003794 ORTHO05D004464 1.9e-26 123.2 158 39.9
SalBow8G2459 Salvia bowleyana HOM05D003794 ORTHO05D004464 4.2e-26 122.1 157 38.9
Sed0013970 Sechium edule HOM05D003794 ORTHO05D004464 4.2e-26 122.1 155 34.8
arahy.Tifrunner.gnm1.ann1.D9MA0I Arachis hypogaea HOM05D003794 ORTHO05D004464 5.5e-26 121.7 167 40.7
BcaC05g27150 Brassica carinata HOM05D003794 ORTHO05D004464 5.5e-26 121.7 178 37.6
C05p30370 Brassica napus HOM05D003794 ORTHO05D004464 5.5e-26 121.7 178 37.6
CsaV3_1G046440 Cucumis sativus L. HOM05D003794 ORTHO05D004464 5.5e-26 121.7 155 36.8
RcHm_v2.0_Chr5g0019931 Rosa chinensis HOM05D003794 ORTHO05D004464 5.5e-26 121.7 151 40.4
Sed0014796 Sechium edule HOM05D003794 ORTHO05D004464 7.2e-26 121.3 156 39.7
Haze_06027 Corylus avellana HOM05D003794 ORTHO05D004464 9.3e-26 120.9 156 39.1
Haze_06028 Corylus avellana HOM05D003794 ORTHO05D004464 9.3e-26 120.9 156 39.1
Oeu008720.1 Olea europaea HOM05D003794 ORTHO05D004464 9.3e-26 120.9 151 41.7
Carub.0001s2960 Capsella rubella HOM05D003794 ORTHO05D004464 1.6e-25 120.2 182 35.7
CiPaw.09G078700 Carya illinoinensis HOM05D003794 ORTHO05D004464 1.6e-25 120.2 141 36.9
SalBow8G4157 Salvia bowleyana HOM05D003794 ORTHO05D004464 1.6e-25 120.2 157 38.2
Sed0012046 Sechium edule HOM05D003794 ORTHO05D004464 1.6e-25 120.2 156 39.1
ClCG01G009290 Citrullus lanatus HOM05D003794 ORTHO05D004464 2.1e-25 119.8 152 36.8
MELO3C021763.2 Cucumis melo HOM05D003794 ORTHO05D004464 2.1e-25 119.8 158 34.8
Thhalv10009870m.g Eutrema salsugineum HOM05D003794 ORTHO05D004464 2.1e-25 119.8 180 37.8
Potri.012G120160 Populus trichocarpa HOM05D003794 ORTHO05D004464 2.1e-25 119.8 148 37.8
arahy.Tifrunner.gnm1.ann1.I4JYF5 Arachis hypogaea HOM05D003794 ORTHO05D004464 2.7e-25 119.4 147 42.2
FAN25G3487 Fragaria x ananassa HOM05D003794 ORTHO05D004464 4.6e-25 118.6 145 42.1
Gohir.A06G140900 Gossypium hirsutum HOM05D003794 ORTHO05D004464 4.6e-25 118.6 157 40.1
Oeu050060.1 Olea europaea HOM05D003794 ORTHO05D004464 4.6e-25 118.6 151 36.4
Sed0015410 Sechium edule HOM05D003794 ORTHO05D004464 4.6e-25 118.6 150 37.3
Prupe.4G110400 Prunus persica HOM05D003794 ORTHO05D004464 6.1e-25 118.2 180 37.8
Thecc.06G141300 Theobroma cacao HOM05D003794 ORTHO05D004464 6.1e-25 118.2 148 39.9
ClCG01G009270 Citrullus lanatus HOM05D003794 ORTHO05D004464 7.9e-25 117.9 159 35.2
Gohir.D06G145100 Gossypium hirsutum HOM05D003794 ORTHO05D004464 1.0e-24 117.5 156 39.7
Gorai.010G168800 Gossypium raimondii HOM05D003794 ORTHO05D004464 1.0e-24 117.5 156 39.7
MBI18_g03837_MAGBIO Magnolia biondii HOM05D003794 ORTHO05D004464 1.0e-24 117.5 159 43.4
Potri.012G120280 Populus trichocarpa HOM05D003794 ORTHO05D004464 1.0e-24 117.5 148 37.8
Sabra15G0137000 Salix brachista HOM05D003794 ORTHO05D004464 1.0e-24 117.5 155 36.8
MELO3C021768.2 Cucumis melo HOM05D003794 ORTHO05D004464 1.3e-24 117.1 154 36.4
AL1G49280 Arabidopsis lyrata HOM05D003794 ORTHO05D004464 3.0e-24 115.9 182 36.3
Cc09_g06270 Coffea canephora HOM05D003794 ORTHO05D004464 3.0e-24 115.9 169 37.9
CSS0016108 Camellia sinensis var. sinensis HOM05D003794 ORTHO05D004464 3.9e-24 115.5 144 38.9
SalBow8G0239 Salvia bowleyana HOM05D003794 ORTHO05D004464 3.9e-24 115.5 152 37.5
SalBow8G3375 Salvia bowleyana HOM05D003794 ORTHO05D004464 3.9e-24 115.5 152 37.5
CsaV3_1G046600 Cucumis sativus L. HOM05D003794 ORTHO05D004464 5.1e-24 115.2 154 37.0
BcaC05g24803 Brassica carinata HOM05D003794 ORTHO05D004464 8.7e-24 114.4 156 39.7
Gorai.006G028700 Gossypium raimondii HOM05D003794 ORTHO05D004464 8.7e-24 114.4 155 40.0
THA.LOC104814363 Tarenaya hassleriana HOM05D003794 ORTHO05D004464 8.7e-24 114.4 153 39.9
Duzib160G0344 Durio zibethinus HOM05D003794 ORTHO05D004464 1.1e-23 114.0 157 39.5
MELO3C021767.2 Cucumis melo HOM05D003794 ORTHO05D004464 1.5e-23 113.6 164 37.2
Aa31LG2G15150 Aethionema arabicum HOM05D003794 ORTHO05D004464 2.5e-23 112.8 167 36.5
Manes.16G059600 Manihot esculenta HOM05D003794 ORTHO05D004464 2.5e-23 112.8 146 37.0
PSO675G9055 Papaver somniferum HOM05D003794 ORTHO05D004464 2.5e-23 112.8 168 35.7
Gohir.A09G025201 Gossypium hirsutum HOM05D003794 ORTHO05D004464 4.3e-23 112.1 166 38.0
Aqoxy4G00782 Aquilegia oxysepala HOM05D003794 ORTHO05D004464 5.7e-23 111.7 147 37.4
Lalb_Chr11g0072291 Lupinus albus HOM05D003794 ORTHO05D004464 7.4e-23 111.3 147 40.1
PSO675G7591 Papaver somniferum HOM05D003794 ORTHO05D004464 9.7e-23 110.9 153 36.6
Thecc.06G140300 Theobroma cacao HOM05D003794 ORTHO05D004464 9.7e-23 110.9 150 38.7
AT1G31200 Arabidopsis thaliana HOM05D003794 ORTHO05D004464 1.3e-22 110.5 130 43.1
BolC5t31776H Brassica oleracea HOM05D003794 ORTHO05D004464 1.3e-22 110.5 169 36.7
Gohir.D09G024500 Gossypium hirsutum HOM05D003794 ORTHO05D004464 1.3e-22 110.5 162 38.9
AT1G10155 Arabidopsis thaliana HOM05D003794 ORTHO05D004464 1.7e-22 110.2 157 37.6
CARHR030680 Cardamine hirsuta HOM05D003794 ORTHO05D004464 2.8e-22 109.4 130 43.1
BcaC05g24807 Brassica carinata HOM05D003794 ORTHO05D004464 3.7e-22 109.0 157 38.2
C05p08300 Brassica napus HOM05D003794 ORTHO05D004464 3.7e-22 109.0 157 38.2
BolC5t29580H Brassica oleracea HOM05D003794 ORTHO05D004464 3.7e-22 109.0 157 38.2
Thhalv10008847m.g Eutrema salsugineum HOM05D003794 ORTHO05D004464 4.8e-22 108.6 157 38.2
Medtr0026s0010 Medicago truncatula HOM05D003794 ORTHO05D004464 4.8e-22 108.6 144 38.2
Potri.015G120100 Populus trichocarpa HOM05D003794 ORTHO05D004464 4.8e-22 108.6 148 35.1
Aqoxy4G00780 Aquilegia oxysepala HOM05D003794 ORTHO05D004464 6.3e-22 108.2 155 39.4
AL1G20850 Arabidopsis lyrata HOM05D003794 ORTHO05D004464 6.3e-22 108.2 157 38.2
Sp1g08790 Schrenkiella parvula HOM05D003794 ORTHO05D004464 6.3e-22 108.2 157 39.5
Carub.0001s0957 Capsella rubella HOM05D003794 ORTHO05D004464 8.2e-22 107.8 157 38.2
Cpa.g.sc135.26 Carica papaya HOM05D003794 ORTHO05D004464 8.2e-22 107.8 167 37.1
TPR.G9537 Trifolium pratense HOM05D003794 ORTHO05D004464 8.2e-22 107.8 150 38.0
A06p06810 Brassica napus HOM05D003794 ORTHO05D004464 1.8e-21 106.7 157 37.6
BraA06t23895Z Brassica rapa HOM05D003794 ORTHO05D004464 1.8e-21 106.7 157 37.6
Dinv05549 Davidia involucrata HOM05D003794 ORTHO05D004464 2.4e-21 106.3 157 39.5
Aa31LG9G16050 Aethionema arabicum HOM05D003794 ORTHO05D004464 3.1e-21 105.9 158 36.1
Glyma.06G221100 Glycine max HOM05D003794 ORTHO05D004464 3.1e-21 105.9 166 36.7
CAN.G519.2 Capsicum annuum HOM05D003794 ORTHO05D004464 4.1e-21 105.5 172 36.0
CsaV3_1G046610 Cucumis sativus L. HOM05D003794 ORTHO05D004464 4.1e-21 105.5 162 34.0
Sabra06G0010100 Salix brachista HOM05D003794 ORTHO05D004464 4.1e-21 105.5 135 38.5
Cc09_g06260 Coffea canephora HOM05D003794 ORTHO05D004464 6.9e-21 104.8 164 36.0
Gohir.D03G117566 Gossypium hirsutum HOM05D003794 ORTHO05D004464 6.9e-21 104.8 150 38.7
CAN.G39.22 Capsicum annuum HOM05D003794 ORTHO05D004464 9.1e-21 104.4 146 35.6
CAN.G519.1 Capsicum annuum HOM05D003794 ORTHO05D004464 1.2e-20 104.0 153 39.9
VMungo1309G0946 Vigna mungo HOM05D003794 ORTHO05D004464 1.2e-20 104.0 165 37.6
Actinidia37906 Actinidia chinensis HOM05D003794 ORTHO05D004464 1.5e-20 103.6 146 34.9
Peaxi162Scf00367g00015 Petunia axillaris HOM05D003794 ORTHO05D004464 2.0e-20 103.2 149 35.6
Sabra12G0088800 Salix brachista HOM05D003794 ORTHO05D004464 2.6e-20 102.8 120 41.7
MD10G1234400 Malus domestica HOM05D003794 ORTHO05D004464 5.9e-20 101.7 153 36.6
Nitab4.5_0000767g0010 Nicotiana tabacum HOM05D003794 ORTHO05D004464 5.9e-20 101.7 160 36.9
Hma1.2p1_2069F.1_g313120 Hydrangea macrophylla HOM05D003794 ORTHO05D004464 7.7e-20 101.3 120 42.5
Sopen02g010020 Solanum pennellii HOM05D003794 ORTHO05D004464 1.3e-19 100.5 149 34.9
THA.LOC104798619 Tarenaya hassleriana HOM05D003794 ORTHO05D004464 1.3e-19 100.5 126 42.9
Actinidia33654 Actinidia chinensis HOM05D003794 ORTHO05D004464 2.2e-19 99.8 152 32.9
Nitab4.5_0006444g0020 Nicotiana tabacum HOM05D003794 ORTHO05D004464 3.8e-19 99.0 153 36.6
Sabra12G0088700 Salix brachista HOM05D003794 ORTHO05D004464 3.8e-19 99.0 109 42.2
Hma1.2p1_0502F.1_g167680 Hydrangea macrophylla HOM05D003794 ORTHO05D004464 5.0e-19 98.6 120 43.3
Manes.16G059700 Manihot esculenta HOM05D003794 ORTHO05D004464 6.5e-19 98.2 145 35.9
Sabra12G0091800 Salix brachista HOM05D003794 ORTHO05D004464 6.5e-19 98.2 108 42.6
PGSC0003DMG400010357 Solanum tuberosum HOM05D003794 ORTHO05D004464 8.5e-19 97.8 159 36.5
Solyc02g031740.3 Solanum lycopersicum HOM05D003794 ORTHO05D004464 1.1e-18 97.4 150 34.0
Potri.015G118900 Populus trichocarpa HOM05D003794 ORTHO05D004464 2.5e-18 96.3 156 35.9
Lj6g0000845 Lotus japonicus HOM05D003794 ORTHO05D004464 3.2e-18 95.9 156 34.6
Phvul.009G205600 Phaseolus vulgaris HOM05D003794 ORTHO05D004464 3.2e-18 95.9 167 36.5
Migut.E01640 Erythranthe guttata HOM05D003794 ORTHO05D004464 4.2e-18 95.5 167 28.7
Psat1g023680 Pisum sativum HOM05D003794 ORTHO05D004464 4.2e-18 95.5 118 38.1
Solyc02g069065.1 Solanum lycopersicum HOM05D003794 ORTHO05D004464 5.5e-18 95.1 160 35.6
Solyc02g069057.1 Solanum lycopersicum HOM05D003794 ORTHO05D004464 9.4e-18 94.4 147 34.0
Migut.E00890 Erythranthe guttata HOM05D003794 ORTHO05D004464 1.2e-17 94.0 166 28.9
Sopen02g018150 Solanum pennellii HOM05D003794 ORTHO05D004464 1.2e-17 94.0 148 35.1
Dinv13778 Davidia involucrata HOM05D003794 ORTHO05D004464 1.6e-17 93.6 129 44.2
Potri.015G118800 Populus trichocarpa HOM05D003794 ORTHO05D004464 3.6e-17 92.4 150 35.3
MBI18_g20612_MAGBIO Magnolia biondii HOM05D003794 ORTHO05D004464 7.9e-17 91.3 175 36.0
Solyc02g069055.1 Solanum lycopersicum HOM05D003794 ORTHO05D004464 1.0e-16 90.9 152 35.5
Phvul.009G205500 Phaseolus vulgaris HOM05D003794 ORTHO05D004464 1.4e-16 90.5 149 34.2
Solyc02g069053.1 Solanum lycopersicum HOM05D003794 ORTHO05D004464 1.4e-16 90.5 148 35.1
Cpa.g.sc135.30 Carica papaya HOM05D003794 ORTHO05D004464 2.3e-16 89.7 165 32.7
Sopen02g018160 Solanum pennellii HOM05D003794 ORTHO05D004464 2.3e-16 89.7 151 34.4
ATR0763G193 Amborella trichopoda HOM05D003794 ORTHO05D004464 5.1e-16 88.6 157 35.0
Potri.015G120000 Populus trichocarpa HOM05D003794 ORTHO05D004464 1.1e-15 87.4 158 32.9
HPP92_005937 Vanilla planifolia HOM05D003794 ORTHO05D004464 4.4e-15 85.5 141 36.2
MBI15_g34447_MAGBIO Magnolia biondii HOM05D003794 ORTHO05D000638 1.1e-13 80.9 121 35.5
Nitab4.5_0003773g0100 Nicotiana tabacum HOM05D003794 ORTHO05D004464 5.3e-13 78.6 98 41.8
SalBow7G3321 Salvia bowleyana HOM05D003794 ORTHO05D004464 5.3e-13 78.6 92 37.0
Potri.015G118850 Populus trichocarpa HOM05D003794 ORTHO05D004464 1.5e-12 77.0 104 38.5
Solyc02g069060.4 Solanum lycopersicum HOM05D003794 ORTHO05D004464 3.4e-12 75.9 128 34.4
MELO3C001310.2 Cucumis melo HOM05D003794 ORTHO05D004464 1.7e-11 73.6 76 46.1
MD10G1234200 Malus domestica HOM05D003794 ORTHO05D004464 8.5e-11 71.2 109 34.9
TAR627G0658 Trochodendron aralioides HOM05D003794 ORTHO05D004464 8.5e-11 71.2 157 31.2
Potri.015G119100 Populus trichocarpa HOM05D003794 ORTHO05D004464 1.6e-09 67.0 120 31.7
ATR0763G032 Amborella trichopoda HOM05D003794 ORTHO05D004464 6.1e-09 65.1 168 26.2
PGSC0003DMG400010359 Solanum tuberosum HOM05D003794 ORTHO05D004464 1.0e-08 64.3 88 37.5
MELO3C027491.2 Cucumis melo HOM05D003794 ORTHO05D004464 1.4e-08 63.9 69 43.5
SMO234G0084 Selaginella moellendorffii HOM05D000950 ORTHO05D000146 3.0e-08 62.8 146 26.7
MELO3C027674.2 Cucumis melo HOM05D003794 ORTHO05D004464 6.7e-08 61.6 52 50.0
Dinv41335 Davidia involucrata HOM05D003794 ORTHO05D004464 6.7e-08 61.6 95 33.7


User provided reference genes

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