Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0022036 Sechium edule HOM05D006589 ORTHO05D008350 0.0e+00 1352.4 693 100.0
CsaV3_1G000740 Cucumis sativus L. HOM05D006589 ORTHO05D008350 0.0e+00 1180.2 687 86.0
ClCG06G017720 Citrullus lanatus HOM05D006589 ORTHO05D008350 0.0e+00 1142.5 681 85.5
Dinv04849 Davidia involucrata HOM05D006589 ORTHO05D008350 6.6e-296 1020.4 689 75.5
MELO3C026221.2 Cucumis melo HOM05D006589 ORTHO05D008350 7.3e-295 1016.9 805 68.2
Gohir.D07G057600 Gossypium hirsutum HOM05D006589 ORTHO05D008350 4.7e-294 1014.2 685 76.1
Haze_07256 Corylus avellana HOM05D006589 ORTHO05D008350 1.4e-293 1012.7 690 75.2
Cfa018872 Carpinus fangiana HOM05D006589 ORTHO05D008350 2.3e-293 1011.9 687 75.8
Actinidia36794 Actinidia chinensis HOM05D006589 ORTHO05D008350 4.0e-293 1011.1 692 75.1
CANSAT80G0035 Cannabis sativa HOM05D006589 ORTHO05D008350 1.5e-292 1009.2 685 74.0
Gohir.A07G053200 Gossypium hirsutum HOM05D006589 ORTHO05D008350 2.0e-292 1008.8 685 74.7
Thecc.03G124600 Theobroma cacao HOM05D006589 ORTHO05D008350 2.9e-291 1005.0 666 75.7
Gorai.001G061100 Gossypium raimondii HOM05D006589 ORTHO05D008350 4.9e-291 1004.2 672 77.1
CSS0007976 Camellia sinensis var. sinensis HOM05D006589 ORTHO05D008350 9.2e-290 1000.0 678 75.1
Prupe.5G155500 Prunus persica HOM05D006589 ORTHO05D008350 3.5e-289 998.0 684 72.5
Eucgr.B00143 Eucalyptus grandis HOM05D006589 ORTHO05D008350 1.1e-287 993.0 645 76.1
PGR083G2113 Punica granatum HOM05D006589 ORTHO05D008350 2.5e-287 991.9 686 73.6
MD14G1162400 Malus domestica HOM05D006589 ORTHO05D008350 2.3e-285 985.3 694 71.3
COL.COLO4_16830 Corchorus olitorius HOM05D006589 ORTHO05D008350 3.1e-285 984.9 669 75.9
RcHm_v2.0_Chr7g0190801 Rosa chinensis HOM05D006589 ORTHO05D008350 3.1e-285 984.9 671 74.8
FvH4_5g07670 Fragaria vesca HOM05D006589 ORTHO05D008350 3.4e-284 981.5 679 71.4
FAN04G1748 Fragaria x ananassa HOM05D006589 ORTHO05D008350 1.9e-282 975.7 675 72.9
FAN13G0522 Fragaria x ananassa HOM05D006589 ORTHO05D008350 2.4e-282 975.3 678 72.1
FAN18G3475 Fragaria x ananassa HOM05D006589 ORTHO05D008350 4.1e-282 974.5 674 71.7
FAN08G0518 Fragaria x ananassa HOM05D006589 ORTHO05D008350 5.4e-282 974.2 676 72.0
Nn4g22414 Nelumbo nucifera HOM05D006589 ORTHO05D008350 7.0e-282 973.8 691 72.9
Manes.14G054400 Manihot esculenta HOM05D006589 ORTHO05D008350 2.7e-281 971.8 680 74.0
TAR622G1334 Trochodendron aralioides HOM05D006589 ORTHO05D008350 7.8e-281 970.3 660 74.7
Peaxi162Scf00089g00326 Petunia axillaris HOM05D006589 ORTHO05D008350 1.9e-279 965.7 681 73.0
Ciclev10019152m.g Citrus clementina HOM05D006589 ORTHO05D008350 9.5e-279 963.4 677 73.3
QL10p004744 Quercus lobata HOM05D006589 ORTHO05D008350 6.2e-278 960.7 646 76.0
Ca_15262_v3 Cicer arietinum L. HOM05D006589 ORTHO05D008350 8.1e-278 960.3 676 71.9
Nitab4.5_0005327g0070 Nicotiana tabacum HOM05D006589 ORTHO05D008350 1.8e-277 959.1 678 71.8
Glyma.04G193700 Glycine max HOM05D006589 ORTHO05D008350 2.3e-277 958.7 675 72.6
Duzib205G1155 Durio zibethinus HOM05D006589 ORTHO05D008350 2.0e-276 955.7 675 73.8
Nitab4.5_0001664g0100 Nicotiana tabacum HOM05D006589 ORTHO05D008350 2.6e-276 955.3 684 71.6
Atru.chr9.1023 Acer truncatum HOM05D006589 ORTHO05D008350 4.4e-276 954.5 621 74.1
Lj1g0010015 Lotus japonicus HOM05D006589 ORTHO05D008350 7.5e-276 953.7 690 71.3
Migut.I00491 Erythranthe guttata HOM05D006589 ORTHO05D008350 1.3e-275 953.0 690 71.3
Sc22g0004160 Simmondsia chinensis HOM05D006589 ORTHO05D008350 1.3e-275 953.0 678 73.2
Glyma.06G172400 Glycine max HOM05D006589 ORTHO05D008350 2.9e-275 951.8 670 73.4
THA.LOC104798952 Tarenaya hassleriana HOM05D006589 ORTHO05D008350 7.8e-273 943.7 688 70.8
Sabra15G0113500 Salix brachista HOM05D006589 ORTHO05D008350 2.3e-272 942.2 675 70.8
TWI23G0930 Tripterygium wilfordii HOM05D006589 ORTHO05D008350 3.9e-272 941.4 676 69.5
Aqoxy5G03523 Aquilegia oxysepala HOM05D006589 ORTHO05D008350 5.1e-272 941.0 682 71.1
arahy.Tifrunner.gnm1.ann1.DGQ22E Arachis hypogaea HOM05D006589 ORTHO05D008350 8.6e-272 940.3 690 71.2
Potri.015G091700 Populus trichocarpa HOM05D006589 ORTHO05D008350 1.1e-271 939.9 681 70.6
Medtr3g075050 Medicago truncatula HOM05D006589 ORTHO05D008350 4.3e-271 937.9 677 70.5
arahy.Tifrunner.gnm1.ann1.RTQA9M Arachis hypogaea HOM05D006589 ORTHO05D008350 9.5e-271 936.8 691 70.6
EL10As4g23464 Beta vulgaris HOM05D006589 ORTHO05D008350 3.6e-270 934.9 631 71.3
Solyc03g111050.3 Solanum lycopersicum HOM05D006589 ORTHO05D008350 3.6e-270 934.9 686 70.7
PGSC0003DMG400015251 Solanum tuberosum HOM05D006589 ORTHO05D008350 3.6e-270 934.9 686 70.6
Sopen03g030220 Solanum pennellii HOM05D006589 ORTHO05D008350 6.2e-270 934.1 678 71.1
Psat5g140160 Pisum sativum HOM05D006589 ORTHO05D008350 5.2e-269 931.0 667 69.3
Phvul.009G168200 Phaseolus vulgaris HOM05D006589 ORTHO05D008350 2.6e-268 928.7 644 71.9
SalBow5G1883 Salvia bowleyana HOM05D006589 ORTHO05D008350 2.6e-268 928.7 689 70.0
SalBow5G0933 Salvia bowleyana HOM05D006589 ORTHO05D008350 1.3e-267 926.4 690 70.0
Lalb_Chr11g0069681 Lupinus albus HOM05D006589 ORTHO05D008350 1.6e-265 919.5 685 70.5
DCAR_007473 Daucus carota HOM05D006589 ORTHO05D008350 2.3e-264 915.6 642 71.3
Cpa.g.sc4.99 Carica papaya HOM05D006589 ORTHO05D008350 2.5e-263 912.1 682 69.1
PSO063G3222 Papaver somniferum HOM05D006589 ORTHO05D008350 3.3e-263 911.8 702 67.8
Lj5A99T74 Lonicera japonica HOM05D006589 ORTHO05D008350 7.3e-263 910.6 712 67.4
TPR.G26148 Trifolium pratense HOM05D006589 ORTHO05D008350 2.8e-262 908.7 645 69.9
Aa31LG4G17110 Aethionema arabicum HOM05D006589 ORTHO05D008350 4.7e-262 907.9 594 72.9
PSO782G1921 Papaver somniferum HOM05D006589 ORTHO05D008350 3.1e-261 905.2 693 66.4
CARHR157250 Cardamine hirsuta HOM05D006589 ORTHO05D008350 1.5e-260 902.9 612 71.6
AL5G27930 Arabidopsis lyrata HOM05D006589 ORTHO05D008350 5.8e-260 901.0 680 69.3
Sp5g13530 Schrenkiella parvula HOM05D006589 ORTHO05D008350 1.7e-259 899.4 658 69.0
Thhalv10010171m.g Eutrema salsugineum HOM05D006589 ORTHO05D008350 6.4e-259 897.5 606 71.5
Carub.0005s1468 Capsella rubella HOM05D006589 ORTHO05D008350 1.9e-258 896.0 665 69.5
BcaB05g23014 Brassica carinata HOM05D006589 ORTHO05D008350 2.7e-257 892.1 663 69.5
CDE02G2664 Ceratophyllum demersum HOM05D006589 ORTHO05D008350 2.3e-256 889.0 650 70.3
BcaC09g49867 Brassica carinata HOM05D006589 ORTHO05D008350 3.9e-256 888.3 607 71.3
C01p32170 Brassica napus HOM05D006589 ORTHO05D008350 6.6e-256 887.5 607 71.2
BolC1t03137H Brassica oleracea HOM05D006589 ORTHO05D008350 8.7e-256 887.1 607 71.2
Hund02417 Selenicereus undatus HOM05D006589 ORTHO05D008350 1.5e-255 886.3 621 70.4
Lsat_1_v5_gn_5_13320 Lactuca sativa HOM05D006589 ORTHO05D008350 2.5e-255 885.6 670 65.2
BraA01t02452Z Brassica rapa HOM05D006589 ORTHO05D008350 3.3e-255 885.2 607 70.8
A01p25610 Brassica napus HOM05D006589 ORTHO05D008350 1.6e-254 882.9 607 70.7
HanXRQChr05g0158451 Helianthus annuus HOM05D006589 ORTHO05D008350 8.1e-254 880.6 671 66.3
AT3G48500 Arabidopsis thaliana HOM05D006589 ORTHO05D008350 7.4e-247 857.4 673 66.9
GSVIVG01008490001 Vitis vinifera HOM05D006589 ORTHO05D008350 6.2e-246 854.4 557 79.0
ECA246G1540 Erigeron canadensis HOM05D006589 ORTHO05D008350 1.3e-243 846.7 615 67.5
MBI08_g33782_MAGBIO Magnolia biondii HOM05D006589 ORTHO05D008350 3.5e-241 838.6 632 69.5
Rhsim12G0172500 Rhododendron simsii HOM05D006589 ORTHO05D008350 1.3e-240 836.6 647 66.2
Cc04_g10160 Coffea canephora HOM05D006589 ORTHO05D008350 1.6e-238 829.7 562 75.6
AUR62025863 Chenopodium quinoa HOM05D006589 ORTHO05D008350 7.1e-234 814.3 629 65.7
vmacro16654 Vaccinium macrocarpon HOM05D006589 ORTHO05D008350 2.3e-232 809.3 796 56.2
CAN.G352.47 Capsicum annuum HOM05D006589 ORTHO05D008350 3.0e-232 808.9 557 74.0
AUR62029828 Chenopodium quinoa HOM05D006589 ORTHO05D008350 3.4e-228 795.4 556 71.0
HPP92_003572 Vanilla planifolia HOM05D006589 ORTHO05D008350 7.7e-228 794.3 624 63.5
SGA_v2.0_scaffold161G37820 Striga asiatica HOM05D006589 ORTHO05D008350 3.9e-224 781.9 579 69.9
Ah.02g115320 Amaranthus hybridus HOM05D006589 ORTHO05D008350 1.5e-220 770.0 676 61.2
CiPaw.12G036500 Carya illinoinensis HOM05D006589 ORTHO05D008350 9.1e-205 717.6 473 78.2
vmacro16714 Vaccinium macrocarpon HOM05D006589 ORTHO05D008350 9.1e-197 691.0 787 50.8
Zm00001eb365570 Zea mays HOM05D006589 ORTHO05D008350 1.3e-195 687.2 607 58.0
Oeu006374.4 Olea europaea HOM05D006589 ORTHO05D000550 4.1e-165 585.9 424 67.7
unitig_0.g1070 Utricularia gibba HOM05D006589 ORTHO05D008350 2.1e-145 520.4 376 69.9
Os01g0901900 Oryza sativa ssp. japonica HOM05D006589 ORTHO05D008350 4.8e-137 492.7 422 58.8
Mapoly0120s0021 Marchantia polymorpha HOM05D006589 ORTHO05D008350 1.7e-126 457.6 526 47.7
Pp3c18_13570 Physcomitrium patens HOM05D006589 ORTHO05D008350 1.6e-116 424.5 557 44.2
ATR0060G001 Amborella trichopoda HOM05D006589 ORTHO05D008350 1.9e-114 417.5 349 63.3
Ca_15265_v3 Cicer arietinum L. HOM05D006589 ORTHO05D008350 8.2e-105 385.6 271 69.7
FAN21G1369 Fragaria x ananassa HOM05D006589 ORTHO05D008350 9.4e-101 372.1 329 59.0
FAN21G3066 Fragaria x ananassa HOM05D006589 ORTHO05D008350 9.4e-101 372.1 329 59.0
unitig_0.g1069 Utricularia gibba HOM05D006589 ORTHO05D008350 8.2e-97 359.0 282 62.8
ATR0686G112 Amborella trichopoda HOM05D006589 ORTHO05D008350 1.2e-84 318.5 224 67.9
SMO356G0597 Selaginella moellendorffii HOM05D006589 ORTHO05D008350 5.2e-83 313.2 555 36.6
RcHm_v2.0_Chr1g0380381 Rosa chinensis HOM05D006589 ORTHO05D008350 1.7e-78 298.1 236 65.3
CBR_g31403 Chara braunii HOM05D006589 ORTHO05D008350 1.3e-62 245.4 565 31.2
SEGI_40144 Sequoiadendron giganteum HOM05D006589 ORTHO05D008350 1.1e-51 209.1 252 45.2
HPP92_003575 Vanilla planifolia HOM05D006589 ORTHO05D008350 6.8e-51 206.5 212 52.8
CDE09G0508 Ceratophyllum demersum HOM05D006589 ORTHO05D008350 2.2e-41 174.9 180 52.8
FAN25G1587 Fragaria x ananassa HOM05D006589 ORTHO05D008350 6.4e-41 173.3 145 64.8
arahy.Tifrunner.gnm1.ann1.85RMBE Arachis hypogaea HOM05D006589 ORTHO05D008350 2.9e-33 147.9 146 54.8
arahy.Tifrunner.gnm1.ann1.Q1JBFY Arachis hypogaea HOM05D006589 ORTHO05D008350 4.6e-31 140.6 124 56.5
MCO14G318 Micromonas commoda HOM05D006589 ORTHO05D008350 2.1e-07 62.0 103 36.9


User provided reference genes

Program Settings