Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0021909 Sechium edule HOM05D007137 ORTHO05D008982 2.0e-129 465.7 222 100.0
MELO3C009672.2 Cucumis melo HOM05D007137 ORTHO05D008982 9.0e-114 413.7 220 87.7
CsaV3_3G039290 Cucumis sativus L. HOM05D007137 ORTHO05D008982 1.0e-112 410.2 220 87.3
Cfa016812 Carpinus fangiana HOM05D007137 ORTHO05D008982 9.7e-92 340.5 220 71.8
CiPaw.09G038400 Carya illinoinensis HOM05D007137 ORTHO05D008982 1.2e-86 323.6 220 67.7
Dinv39605 Davidia involucrata HOM05D007137 ORTHO05D008982 3.9e-85 318.5 213 67.1
Actinidia09328 Actinidia chinensis HOM05D007137 ORTHO05D008982 5.7e-84 314.7 219 63.9
ClCG10G017100 Citrullus lanatus HOM05D007137 ORTHO05D008982 5.7e-84 314.7 241 68.0
Ciclev10005859m.g Citrus clementina HOM05D007137 ORTHO05D008982 2.2e-83 312.8 213 69.0
Gohir.A09G122000 Gossypium hirsutum HOM05D007137 ORTHO05D008982 2.8e-83 312.4 217 65.9
Potri.006G051500 Populus trichocarpa HOM05D007137 ORTHO05D008982 4.8e-83 311.6 212 68.9
Gohir.D09G118100 Gossypium hirsutum HOM05D007137 ORTHO05D008982 8.2e-83 310.8 217 65.9
Gorai.006G136400 Gossypium raimondii HOM05D007137 ORTHO05D008982 8.2e-83 310.8 217 65.9
Haze_19852 Corylus avellana HOM05D007137 ORTHO05D008982 1.1e-82 310.5 212 68.4
TWI74G1615 Tripterygium wilfordii HOM05D007137 ORTHO05D008982 1.8e-82 309.7 215 67.9
Thecc.05G153200 Theobroma cacao HOM05D007137 ORTHO05D008982 3.1e-82 308.9 212 66.0
Duzib093G1775 Durio zibethinus HOM05D007137 ORTHO05D008982 7.0e-82 307.8 212 65.1
CSS0026997 Camellia sinensis var. sinensis HOM05D007137 ORTHO05D008982 4.5e-81 305.1 217 65.4
Rhsim03G0024800 Rhododendron simsii HOM05D007137 ORTHO05D008982 1.0e-80 303.9 219 65.3
TAR369G0818 Trochodendron aralioides HOM05D007137 ORTHO05D008982 6.5e-80 301.2 225 63.1
Prupe.7G059700 Prunus persica HOM05D007137 ORTHO05D008982 1.5e-79 300.1 217 65.4
Hma1.2p1_2002F.1_g310780 Hydrangea macrophylla HOM05D007137 ORTHO05D008982 4.2e-79 298.5 209 64.1
Nitab4.5_0010636g0030 Nicotiana tabacum HOM05D007137 ORTHO05D008982 2.1e-78 296.2 211 63.0
Nn2g15218 Nelumbo nucifera HOM05D007137 ORTHO05D008982 2.7e-78 295.8 222 62.2
QL07p000577 Quercus lobata HOM05D007137 ORTHO05D008982 3.6e-78 295.4 223 63.2
Rhsim03G0024600 Rhododendron simsii HOM05D007137 ORTHO05D008982 3.6e-78 295.4 219 63.5
Sc13g0001720 Simmondsia chinensis HOM05D007137 ORTHO05D008982 6.1e-78 294.7 211 63.0
Cc06_g17570 Coffea canephora HOM05D007137 ORTHO05D008982 8.0e-78 294.3 232 60.8
Phvul.007G252600 Phaseolus vulgaris HOM05D007137 ORTHO05D008982 1.0e-77 293.9 214 64.5
AL4G40070 Arabidopsis lyrata HOM05D007137 ORTHO05D008982 1.4e-77 293.5 224 60.3
FAN05G2215 Fragaria x ananassa HOM05D007137 ORTHO05D008982 1.4e-77 293.5 227 61.7
MD12G1074200 Malus domestica HOM05D007137 ORTHO05D008982 1.4e-77 293.5 219 62.6
FAN09G1348 Fragaria x ananassa HOM05D007137 ORTHO05D008982 2.3e-77 292.7 230 62.2
vmacro07849 Vaccinium macrocarpon HOM05D007137 ORTHO05D008982 2.3e-77 292.7 218 64.2
Sp4g24030 Schrenkiella parvula HOM05D007137 ORTHO05D008982 3.0e-77 292.4 212 61.8
Carub.0004s2404 Capsella rubella HOM05D007137 ORTHO05D008982 5.2e-77 291.6 212 60.4
CARHR136840 Cardamine hirsuta HOM05D007137 ORTHO05D008982 5.2e-77 291.6 224 59.4
Ca_26019_v3 Cicer arietinum L. HOM05D007137 ORTHO05D008982 5.2e-77 291.6 214 63.6
Nitab4.5_0005195g0030 Nicotiana tabacum HOM05D007137 ORTHO05D008982 6.7e-77 291.2 211 62.6
Thhalv10017217m.g Eutrema salsugineum HOM05D007137 ORTHO05D008982 1.1e-76 290.4 212 60.8
PGSC0003DMG400027277 Solanum tuberosum HOM05D007137 ORTHO05D008982 1.1e-76 290.4 218 61.0
Lj5g0009390 Lotus japonicus HOM05D007137 ORTHO05D008982 1.5e-76 290.0 211 65.4
AT2G41760 Arabidopsis thaliana HOM05D007137 ORTHO05D008982 2.0e-76 289.7 212 60.8
PGR004G0226 Punica granatum HOM05D007137 ORTHO05D008982 2.0e-76 289.7 216 60.2
RcHm_v2.0_Chr3g0482531 Rosa chinensis HOM05D007137 ORTHO05D008982 2.6e-76 289.3 218 63.3
FvH4_6g23850 Fragaria vesca HOM05D007137 ORTHO05D008982 4.4e-76 288.5 218 63.3
Lalb_Chr21g0316491 Lupinus albus HOM05D007137 ORTHO05D008982 4.4e-76 288.5 227 61.2
Migut.J01757 Erythranthe guttata HOM05D007137 ORTHO05D008982 1.7e-75 286.6 221 58.4
THA.LOC104818226 Tarenaya hassleriana HOM05D007137 ORTHO05D008982 1.7e-75 286.6 222 59.5
CANSAT80G0539 Cannabis sativa HOM05D007137 ORTHO05D008982 2.2e-75 286.2 219 62.6
Glyma.10G097900 Glycine max HOM05D007137 ORTHO05D008982 2.2e-75 286.2 214 64.0
Medtr7g034355 Medicago truncatula HOM05D007137 ORTHO05D008982 2.8e-75 285.8 217 62.7
Lsat_1_v5_gn_9_29000 Lactuca sativa HOM05D007137 ORTHO05D008982 3.7e-75 285.4 222 58.6
TPR.G10636 Trifolium pratense HOM05D007137 ORTHO05D008982 3.7e-75 285.4 216 63.9
CANSAT80G1960 Cannabis sativa HOM05D007137 ORTHO05D008982 4.8e-75 285.0 219 62.6
Peaxi162Scf00130g00019 Petunia axillaris HOM05D007137 ORTHO05D008982 4.8e-75 285.0 210 62.4
MSTRG.6429 Avicennia marina HOM05D007137 ORTHO05D008982 8.2e-75 284.3 221 60.2
Solyc04g015760.4 Solanum lycopersicum HOM05D007137 ORTHO05D008982 8.2e-75 284.3 210 61.9
Sopen04g007840 Solanum pennellii HOM05D007137 ORTHO05D008982 1.4e-74 283.5 200 62.5
Oeu008913.1 Olea europaea HOM05D007137 ORTHO05D008982 9.1e-74 280.8 211 59.2
Oeu008915.1 Olea europaea HOM05D007137 ORTHO05D008982 9.1e-74 280.8 211 59.2
AUR62024453 Chenopodium quinoa HOM05D007137 ORTHO05D008982 2.7e-73 279.3 204 61.8
GSVIVG01033260001 Vitis vinifera HOM05D007137 ORTHO05D008982 2.7e-73 279.3 211 60.7
Eucgr.A02346 Eucalyptus grandis HOM05D007137 ORTHO05D008982 3.5e-73 278.9 216 60.6
AUR62026042 Chenopodium quinoa HOM05D007137 ORTHO05D008982 5.9e-73 278.1 214 58.9
Sabra06G0036100 Salix brachista HOM05D007137 ORTHO05D008982 5.9e-73 278.1 212 63.2
EL10Ac3g07093 Beta vulgaris HOM05D007137 ORTHO05D008982 1.0e-72 277.3 207 62.3
A03p23410 Brassica napus HOM05D007137 ORTHO05D008982 1.3e-72 276.9 236 54.7
BraA03t11558Z Brassica rapa HOM05D007137 ORTHO05D008982 1.7e-72 276.6 236 54.7
C03p27930 Brassica napus HOM05D007137 ORTHO05D008982 6.5e-72 274.6 233 56.7
HanXRQChr15g0491151 Helianthus annuus HOM05D007137 ORTHO05D008982 1.1e-71 273.9 217 59.4
BolC3t15165H Brassica oleracea HOM05D007137 ORTHO05D008982 1.6e-70 270.0 245 53.9
Aqoxy1G00329 Aquilegia oxysepala HOM05D007137 ORTHO05D008982 2.1e-70 269.6 224 58.0
Atru.BG.154.p Acer truncatum HOM05D007137 ORTHO05D008982 3.0e-69 265.8 212 61.3
CAN.G1456.1 Capsicum annuum HOM05D007137 ORTHO05D008982 5.2e-69 265.0 184 63.0
ECA247G4023 Erigeron canadensis HOM05D007137 ORTHO05D008982 8.8e-69 264.2 213 57.3
Hund24707 Selenicereus undatus HOM05D007137 ORTHO05D008982 9.8e-68 260.8 204 59.3
arahy.Tifrunner.gnm1.ann1.QC7DP1 Arachis hypogaea HOM05D007137 ORTHO05D008982 3.7e-67 258.8 218 56.9
PSO384G0937 Papaver somniferum HOM05D007137 ORTHO05D008982 1.6e-65 253.4 217 57.6
Ah.04g151610 Amaranthus hybridus HOM05D000942 ORTHO05D000918 1.9e-63 246.5 198 58.6
CAN.G676.70 Capsicum annuum HOM05D007137 ORTHO05D008982 1.9e-63 246.5 193 60.1
MBI17_g01631_MAGBIO Magnolia biondii HOM05D007137 ORTHO05D008982 1.9e-63 246.5 211 56.4
Psat6g120120 Pisum sativum HOM05D007137 ORTHO05D008982 1.2e-62 243.8 171 66.1
Os05g0387900 Oryza sativa ssp. japonica HOM05D007137 ORTHO05D008982 4.7e-62 241.9 212 55.2
Manes.09G022100 Manihot esculenta HOM05D007137 ORTHO05D008982 4.0e-61 238.8 215 56.3
arahy.Tifrunner.gnm1.ann1.F03MXT Arachis hypogaea HOM05D007137 ORTHO05D008982 2.2e-59 233.0 197 56.3
ATR0320G015 Amborella trichopoda HOM05D007137 ORTHO05D008982 1.4e-58 230.3 215 49.8
CDE02G1742 Ceratophyllum demersum HOM05D007137 ORTHO05D008982 3.1e-58 229.2 171 59.1
Aa31LG1G23770 Aethionema arabicum HOM05D007137 ORTHO05D008982 5.4e-58 228.4 174 60.3
SalBow6G6768 Salvia bowleyana HOM05D007137 ORTHO05D008982 5.9e-57 224.9 241 46.5
Cpa.g.sc92.53 Carica papaya HOM05D007137 ORTHO05D008982 8.6e-56 221.1 174 60.9
SGA_v2.0_scaffold105G30410 Striga asiatica HOM05D007137 ORTHO05D008982 2.5e-55 219.5 179 56.4
HPP92_001018 Vanilla planifolia HOM05D007137 ORTHO05D008982 3.3e-55 219.2 202 51.5
Lju124C41G12 Lonicera japonica HOM05D007137 ORTHO05D008982 1.6e-54 216.9 209 51.7
CSS0041211 Camellia sinensis var. sinensis HOM05D007137 ORTHO05D008982 1.0e-53 214.2 180 57.2
DCAR_020492 Daucus carota HOM05D007137 ORTHO05D008982 1.8e-50 203.4 161 60.9
Mapoly0062s0037 Marchantia polymorpha HOM05D007137 ORTHO05D008982 3.3e-47 192.6 200 47.0
FAN02G0118 Fragaria x ananassa HOM05D007137 ORTHO05D008982 1.4e-45 187.2 130 67.7
Pp3c8_16370 Physcomitrium patens HOM05D007137 ORTHO05D008982 2.6e-44 183.0 180 46.7
Hma1.2p1_2520F.1_g323835 Hydrangea macrophylla HOM05D007137 ORTHO05D008982 1.5e-39 167.2 108 65.7
SMO353G0157 Selaginella moellendorffii HOM05D007137 ORTHO05D008982 4.3e-39 165.6 190 43.2
SMO302G0006 Selaginella moellendorffii HOM05D007137 ORTHO05D008982 7.3e-39 164.9 206 40.8
Rhsim03G0024200 Rhododendron simsii HOM05D007137 ORTHO05D008982 1.4e-26 124.0 161 45.3
VMungo0720G0821 Vigna mungo HOM05D007137 ORTHO05D008982 3.9e-24 115.9 97 59.8
Zm00001eb286980 Zea mays HOM05D007137 ORTHO05D008982 3.9e-24 115.9 91 53.8
CSS0024811 Camellia sinensis var. sinensis HOM05D007137 ORTHO05D008982 4.3e-23 112.5 80 62.5
CBR_g39180 Chara braunii HOM05D007137 ORTHO05D008982 2.6e-20 103.2 98 44.9
SEGI_00420 Sequoiadendron giganteum HOM05D007137 ORTHO05D008982 1.3e-14 84.3 82 45.1
Cre04.g217912 Chlamydomonas reinhardtii HOM05D007137 ORTHO05D008982 1.7e-11 73.9 91 37.4
MELO3C032006.2 Cucumis melo HOM05D001831 ORTHO05D166811 2.5e-07 60.1 30 86.7


User provided reference genes

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