Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0018525 Sechium edule HOM05D005359 ORTHO05D006431 4.6e-244 847.4 420 100.0
ClCG09G014240 Citrullus lanatus HOM05D005359 ORTHO05D006431 3.3e-181 638.6 420 74.3
Sed0010360 Sechium edule HOM05D005359 ORTHO05D006431 2.0e-178 629.4 420 73.6
CsaV3_6G037270 Cucumis sativus L. HOM05D005359 ORTHO05D006431 1.8e-176 622.9 420 72.1
MELO3C014388.2 Cucumis melo HOM05D005359 ORTHO05D006431 7.0e-176 620.9 415 72.5
Prupe.1G568000 Prunus persica HOM05D005359 ORTHO05D006431 1.5e-162 576.6 420 66.4
Manes.07G015400 Manihot esculenta HOM05D005359 ORTHO05D006431 2.9e-161 572.4 420 66.2
MD15G1422700 Malus domestica HOM05D005359 ORTHO05D006431 4.9e-161 571.6 420 64.8
COL.COLO4_17869 Corchorus olitorius HOM05D005359 ORTHO05D006431 1.9e-160 569.7 420 65.2
Ciclev10001293m.g Citrus clementina HOM05D005359 ORTHO05D006431 2.4e-160 569.3 420 66.4
RcHm_v2.0_Chr7g0222501 Rosa chinensis HOM05D005359 ORTHO05D006431 3.2e-160 568.9 420 65.0
Duzib052G1228 Durio zibethinus HOM05D005359 ORTHO05D006431 1.0e-158 563.9 420 65.2
Cpa.g.sc113.63 Carica papaya HOM05D005359 ORTHO05D006431 1.1e-157 560.5 420 65.0
CiPaw.06G147600 Carya illinoinensis HOM05D005359 ORTHO05D006431 2.5e-157 559.3 420 65.0
Thecc.02G038700 Theobroma cacao HOM05D005359 ORTHO05D006431 2.5e-157 559.3 420 64.5
Gohir.A01G178400 Gossypium hirsutum HOM05D005359 ORTHO05D006431 1.2e-156 557.0 420 63.8
Gohir.D01G169300 Gossypium hirsutum HOM05D005359 ORTHO05D006431 1.2e-156 557.0 420 64.0
Gorai.002G210900 Gossypium raimondii HOM05D005359 ORTHO05D006431 2.8e-156 555.8 420 63.8
Dinv19364 Davidia involucrata HOM05D005359 ORTHO05D006431 1.1e-155 553.9 420 64.3
MD08G1228700 Malus domestica HOM05D005359 ORTHO05D006431 2.4e-155 552.7 405 65.7
QL08p043348 Quercus lobata HOM05D005359 ORTHO05D006431 2.4e-155 552.7 419 64.4
Eucgr.I02722 Eucalyptus grandis HOM05D005359 ORTHO05D006431 5.2e-155 551.6 420 62.4
Haze_01666 Corylus avellana HOM05D005359 ORTHO05D006431 8.9e-155 550.8 420 64.3
Glyma.15G046900 Glycine max HOM05D005359 ORTHO05D006431 4.4e-154 548.5 420 63.8
FvH4_5g29550 Fragaria vesca HOM05D005359 ORTHO05D006431 9.9e-154 547.4 420 63.1
Potri.003G019400 Populus trichocarpa HOM05D005359 ORTHO05D006431 9.9e-154 547.4 420 63.8
Cfa005525 Carpinus fangiana HOM05D005359 ORTHO05D006431 1.3e-153 547.0 420 63.6
FAN18G3183 Fragaria x ananassa HOM05D005359 ORTHO05D006431 3.8e-153 545.4 420 62.9
Gorai.008G042100 Gossypium raimondii HOM05D005359 ORTHO05D006431 4.9e-153 545.0 420 63.3
CANSAT11G0924 Cannabis sativa HOM05D005359 ORTHO05D006431 8.4e-153 544.3 420 62.6
FAN08G1144 Fragaria x ananassa HOM05D005359 ORTHO05D006431 8.4e-153 544.3 420 62.4
TWI23G0911 Tripterygium wilfordii HOM05D005359 ORTHO05D006431 1.1e-152 543.9 420 62.6
Gohir.A12G031900 Gossypium hirsutum HOM05D005359 ORTHO05D006431 1.9e-152 543.1 420 62.4
Gohir.D12G040400 Gossypium hirsutum HOM05D005359 ORTHO05D006431 3.2e-152 542.3 420 63.1
Sabra03G0010900 Salix brachista HOM05D005359 ORTHO05D006431 3.2e-152 542.3 420 63.6
Lj5A252T45 Lonicera japonica HOM05D005359 ORTHO05D006431 1.6e-151 540.0 420 63.1
Glyma.08G185900 Glycine max HOM05D005359 ORTHO05D006431 2.1e-151 539.7 420 62.6
TWI14G1253 Tripterygium wilfordii HOM05D005359 ORTHO05D006431 3.5e-151 538.9 420 61.7
arahy.Tifrunner.gnm1.ann1.HK0KDN Arachis hypogaea HOM05D005359 ORTHO05D006431 4.6e-151 538.5 420 61.9
FAN13G1157 Fragaria x ananassa HOM05D005359 ORTHO05D006431 4.6e-151 538.5 420 62.1
Sabra01G0162800 Salix brachista HOM05D005359 ORTHO05D006431 4.6e-151 538.5 420 62.6
CANSAT11G2649 Cannabis sativa HOM05D005359 ORTHO05D006431 7.8e-151 537.7 421 62.2
CSS0043414 Camellia sinensis var. sinensis HOM05D005359 ORTHO05D006431 1.3e-150 537.0 420 62.4
Potri.001G210800 Populus trichocarpa HOM05D005359 ORTHO05D006431 1.3e-150 537.0 420 62.6
CSS0002632 Camellia sinensis var. sinensis HOM05D005359 ORTHO05D006431 2.3e-150 536.2 420 62.6
Nn5g28206 Nelumbo nucifera HOM05D005359 ORTHO05D006431 2.3e-150 536.2 420 61.4
arahy.Tifrunner.gnm1.ann1.8TZ9EP Arachis hypogaea HOM05D005359 ORTHO05D006431 5.1e-150 535.0 420 61.2
Lj6g0011599 Lotus japonicus HOM05D005359 ORTHO05D006431 7.3e-149 531.2 420 61.2
Rhsim11G0129700 Rhododendron simsii HOM05D005359 ORTHO05D006431 9.6e-149 530.8 420 61.9
PGR042G0198 Punica granatum HOM05D005359 ORTHO05D006431 1.2e-148 530.4 420 61.0
TAR376G0200 Trochodendron aralioides HOM05D005359 ORTHO05D006431 2.1e-148 529.6 420 61.2
Dinv24279 Davidia involucrata HOM05D005359 ORTHO05D006431 8.1e-148 527.7 420 61.7
VMungo0540G0616 Vigna mungo HOM05D005359 ORTHO05D006431 2.4e-147 526.2 420 59.5
vmacro01763 Vaccinium macrocarpon HOM05D005359 ORTHO05D006431 3.1e-147 525.8 420 61.4
MSTRG.5231 Avicennia marina HOM05D005359 ORTHO05D006431 9.0e-147 524.2 420 60.2
TAR628G1654 Trochodendron aralioides HOM05D005359 ORTHO05D006431 7.6e-146 521.2 420 59.8
Lsat_1_v5_gn_5_109981 Lactuca sativa HOM05D005359 ORTHO05D006431 1.7e-145 520.0 421 60.8
Cc02_g22460 Coffea canephora HOM05D005359 ORTHO05D006431 2.9e-145 519.2 420 60.0
Medtr2g007220 Medicago truncatula HOM05D005359 ORTHO05D006431 9.3e-144 514.2 420 58.6
SalBow6G6401 Salvia bowleyana HOM05D005359 ORTHO05D006431 9.3e-144 514.2 420 60.0
Phvul.002G250300 Phaseolus vulgaris HOM05D005359 ORTHO05D006431 1.2e-143 513.8 420 59.5
Lj4g0002358 Lotus japonicus HOM05D005359 ORTHO05D006431 1.6e-143 513.5 425 59.1
Oeu008891.1 Olea europaea HOM05D005359 ORTHO05D006431 1.6e-143 513.5 420 61.0
Ca_00078_v3 Cicer arietinum L. HOM05D005359 ORTHO05D006431 3.5e-143 512.3 419 58.7
Psat2g122240 Pisum sativum HOM05D005359 ORTHO05D006431 3.5e-143 512.3 420 58.3
TPR.G2126 Trifolium pratense HOM05D005359 ORTHO05D006431 1.3e-142 510.4 420 58.1
DCAR_013987 Daucus carota HOM05D005359 ORTHO05D006431 1.7e-142 510.0 420 59.0
Glyma.08G127900 Glycine max HOM05D005359 ORTHO05D006431 3.0e-142 509.2 421 59.9
HanXRQChr16g0514561 Helianthus annuus HOM05D005359 ORTHO05D006431 6.6e-142 508.1 420 58.6
Phvul.006G214300 Phaseolus vulgaris HOM05D005359 ORTHO05D006431 1.5e-141 506.9 421 58.0
VMungo0251G3193 Vigna mungo HOM05D005359 ORTHO05D006431 4.3e-141 505.4 420 59.0
ECA234G2063 Erigeron canadensis HOM05D005359 ORTHO05D006431 7.3e-141 504.6 420 58.3
AUR62002965 Chenopodium quinoa HOM05D005359 ORTHO05D006431 1.6e-140 503.4 425 58.4
AUR62007773 Chenopodium quinoa HOM05D005359 ORTHO05D006431 2.1e-140 503.1 425 58.6
Glyma.05G169600 Glycine max HOM05D005359 ORTHO05D006431 2.1e-140 503.1 421 59.1
Hund05788 Selenicereus undatus HOM05D005359 ORTHO05D006431 6.2e-140 501.5 423 59.1
EL10Ac6g14556 Beta vulgaris HOM05D005359 ORTHO05D006431 1.8e-139 500.0 425 58.6
HanXRQChr10g0289981 Helianthus annuus HOM05D005359 ORTHO05D006431 1.8e-139 500.0 420 56.7
SGA_v2.0_scaffold292G47368 Striga asiatica HOM05D005359 ORTHO05D006431 1.8e-139 500.0 407 61.2
DCAR_031890 Daucus carota HOM05D005359 ORTHO05D006431 6.9e-139 498.0 407 58.5
HanXRQChr06g0169581 Helianthus annuus HOM05D005359 ORTHO05D006431 3.4e-138 495.7 420 59.0
Lalb_Chr20g0123431 Lupinus albus HOM05D005359 ORTHO05D006431 4.5e-138 495.4 420 56.7
GSVIVG01022967001 Vitis vinifera HOM05D005359 ORTHO05D006431 5.8e-138 495.0 423 59.6
unitig_26.g9020 Utricularia gibba HOM05D005359 ORTHO05D006431 2.2e-137 493.0 420 58.1
Sc16g0001650 Simmondsia chinensis HOM05D005359 ORTHO05D006431 2.9e-137 492.7 424 59.0
Peaxi162Scf00011g00352 Petunia axillaris HOM05D005359 ORTHO05D006431 6.4e-137 491.5 421 58.2
Aqoxy5G02275 Aquilegia oxysepala HOM05D005359 ORTHO05D006431 1.9e-136 490.0 422 57.6
THA.LOC104819321 Tarenaya hassleriana HOM05D005359 ORTHO05D006431 4.2e-136 488.8 421 57.2
CiPaw.05G044000 Carya illinoinensis HOM05D005359 ORTHO05D006431 7.1e-136 488.0 420 57.6
Nitab4.5_0007420g0030 Nicotiana tabacum HOM05D005359 ORTHO05D006431 3.5e-135 485.7 422 58.3
Thhalv10007703m.g Eutrema salsugineum HOM05D005359 ORTHO05D006431 1.0e-134 484.2 420 57.1
Migut.N01041 Erythranthe guttata HOM05D005359 ORTHO05D006431 3.0e-134 482.6 420 57.6
THA.LOC104809588 Tarenaya hassleriana HOM05D005359 ORTHO05D006431 5.1e-134 481.9 420 56.4
Sp1g09480 Schrenkiella parvula HOM05D005359 ORTHO05D006431 6.7e-134 481.5 420 56.7
Aa31LG1G4050 Aethionema arabicum HOM05D005359 ORTHO05D006431 8.7e-134 481.1 420 57.4
AT1G10780 Arabidopsis thaliana HOM05D005359 ORTHO05D006431 3.7e-132 475.7 420 57.1
CARHR011000 Cardamine hirsuta HOM05D005359 ORTHO05D006431 3.7e-132 475.7 420 56.2
A09p64680 Brassica napus HOM05D005359 ORTHO05D006431 6.9e-131 471.5 420 55.5
BraA09t41824Z Brassica rapa HOM05D005359 ORTHO05D006431 1.2e-130 470.7 420 55.5
AL1G21710 Arabidopsis lyrata HOM05D005359 ORTHO05D006431 2.6e-130 469.5 420 56.7
C08p48500 Brassica napus HOM05D005359 ORTHO05D006431 3.4e-130 469.2 420 55.2
BolC8t52390H Brassica oleracea HOM05D005359 ORTHO05D006431 3.4e-130 469.2 420 55.2
Carub.0001s1033 Capsella rubella HOM05D005359 ORTHO05D006431 2.9e-129 466.1 420 54.8
ECA236G4790 Erigeron canadensis HOM05D005359 ORTHO05D006431 3.8e-129 465.7 381 59.6
Lalb_Chr07g0185731 Lupinus albus HOM05D005359 ORTHO05D006431 3.2e-128 462.6 421 53.9
Nitab4.5_0002245g0060 Nicotiana tabacum HOM05D005359 ORTHO05D006431 1.8e-126 456.8 421 55.3
MBI06_g20718_MAGBIO Magnolia biondii HOM05D005359 ORTHO05D006431 2.3e-126 456.4 420 52.1
PGSC0003DMG400023758 Solanum tuberosum HOM05D005359 ORTHO05D006431 7.4e-125 451.4 420 56.0
CAN.G1577.14 Capsicum annuum HOM05D005359 ORTHO05D006431 6.2e-124 448.4 421 55.3
Sopen01g046670 Solanum pennellii HOM05D005359 ORTHO05D006431 4.0e-123 445.7 420 55.2
ATR0193G009 Amborella trichopoda HOM05D005359 ORTHO05D006431 6.9e-123 444.9 420 52.1
Os09g0454300 Oryza sativa ssp. japonica HOM05D005359 ORTHO05D006431 7.4e-117 424.9 421 49.9
Ah.03g138120 Amaranthus hybridus HOM05D005359 ORTHO05D006431 5.0e-113 412.1 425 49.9
Zm00001eb100430 Zea mays HOM05D005359 ORTHO05D006431 2.7e-111 406.4 405 48.4
Zm00001eb176520 Zea mays HOM05D005359 ORTHO05D006431 1.5e-109 400.6 425 46.8
Zm00001eb037840 Zea mays HOM05D005359 ORTHO05D006431 3.3e-109 399.4 425 47.1
Solyc01g104230.4 Solanum lycopersicum HOM05D005359 ORTHO05D006431 2.5e-104 383.3 356 55.6
Lsat_1_v5_gn_4_48740 Lactuca sativa HOM05D005359 ORTHO05D006431 2.6e-98 363.2 325 56.6
Os08g0469500 Oryza sativa ssp. japonica HOM05D005359 ORTHO05D006431 2.5e-96 356.7 422 44.3
Mapoly0113s0005 Marchantia polymorpha HOM05D005359 ORTHO05D006431 3.6e-95 352.8 411 42.1
Hma1.2p1_0217F.1_g092010 Hydrangea macrophylla HOM05D005359 ORTHO05D006431 8.8e-94 348.2 259 63.7
Thecc.02G038500 Theobroma cacao HOM05D005359 ORTHO05D006431 3.1e-91 339.7 276 59.4
AagrBONN_evm.TU.Sc2ySwM_117.2184 Anthoceros agrestis HOM05D005359 ORTHO05D006431 3.5e-82 309.7 361 42.7
SMO169G0280 Selaginella moellendorffii HOM05D005359 ORTHO05D006431 2.5e-80 303.5 414 40.6
Nn1g08733 Nelumbo nucifera HOM05D005359 ORTHO05D006431 1.7e-76 290.8 248 56.5
HPP92_010977 Vanilla planifolia HOM05D005359 ORTHO05D006431 2.2e-76 290.4 299 48.2
Oeu033126.1 Olea europaea HOM05D005359 ORTHO05D006431 8.9e-70 268.5 302 48.7
Atru.chr6.646 Acer truncatum HOM05D005359 ORTHO05D006431 8.3e-52 208.8 139 69.1
CDE11G1073 Ceratophyllum demersum HOM05D005359 ORTHO05D006431 1.9e-51 207.6 317 36.3
arahy.Tifrunner.gnm1.ann1.3FYK03 Arachis hypogaea HOM05D005359 ORTHO05D006431 1.2e-47 194.9 269 41.3
BcaC05g24954 Brassica carinata HOM05D005359 ORTHO05D006431 5.8e-37 159.5 161 50.9
arahy.Tifrunner.gnm1.ann1.BYQ4G2 Arachis hypogaea HOM05D005359 ORTHO05D006431 1.1e-30 138.7 99 62.6
Dinv24276 Davidia involucrata HOM05D005359 ORTHO05D006431 3.1e-30 137.1 126 54.8
arahy.Tifrunner.gnm1.ann1.94J17Q Arachis hypogaea HOM05D005359 ORTHO05D006431 1.9e-27 127.9 88 63.6
arahy.Tifrunner.gnm1.ann1.B308TG Arachis hypogaea HOM05D005359 ORTHO05D006431 9.6e-24 115.5 71 69.0
arahy.Tifrunner.gnm1.ann1.E0G9L5 Arachis hypogaea HOM05D005359 ORTHO05D006431 3.6e-23 113.6 73 65.8
arahy.Tifrunner.gnm1.ann1.F717DE Arachis hypogaea HOM05D005359 ORTHO05D006431 3.1e-22 110.5 71 67.6
arahy.Tifrunner.gnm1.ann1.HDLM7U Arachis hypogaea HOM05D005359 ORTHO05D006431 4.5e-21 106.7 71 66.2
arahy.Tifrunner.gnm1.ann1.X0Q2J1 Arachis hypogaea HOM05D005359 ORTHO05D006431 4.5e-21 106.7 71 66.2
Oeu056678.1 Olea europaea HOM05D005359 ORTHO05D006431 5.3e-14 83.2 79 48.1
MSTRG.27843 Avicennia marina HOM05D005359 ORTHO05D006431 2.6e-13 80.9 104 42.3
Pp3c6_15150 Physcomitrium patens HOM05D019739 ORTHO05D026044 5.8e-13 79.7 435 24.1
Prupe.7G111200 Prunus persica HOM05D003488 ORTHO05D004214 2.1e-07 61.2 415 24.3
Aa31LG2G3560 Aethionema arabicum HOM05D003488 ORTHO05D004214 2.8e-07 60.8 330 23.6
HanXRQChr02g0054781 Helianthus annuus HOM05D003488 ORTHO05D004214 4.8e-07 60.1 421 21.9
arahy.Tifrunner.gnm1.ann1.0J6PHG Arachis hypogaea HOM05D003488 ORTHO05D004214 8.2e-07 59.3 418 22.0
arahy.Tifrunner.gnm1.ann1.Q9WWUM Arachis hypogaea HOM05D003488 ORTHO05D004214 8.2e-07 59.3 418 22.0
HanXRQChr13g0397431 Helianthus annuus HOM05D003488 ORTHO05D004214 1.1e-06 58.9 349 24.1
Phvul.001G189500 Phaseolus vulgaris HOM05D003488 ORTHO05D004214 1.1e-06 58.9 265 25.7
Zm00001eb147200 Zea mays HOM05D003488 ORTHO05D004214 1.1e-06 58.9 197 26.9
Hund23611 Selenicereus undatus HOM05D001396 ORTHO05D000493 1.8e-06 58.2 262 23.3
HanXRQChr03g0060651 Helianthus annuus HOM05D006588 ORTHO05D008272 2.4e-06 57.8 262 26.3
HanXRQChr03g0060671 Helianthus annuus HOM05D006588 ORTHO05D008272 2.4e-06 57.8 262 26.3
FAN17G2978 Fragaria x ananassa HOM05D030415 ORTHO05D006431 3.1e-06 57.4 83 43.4
MD14G1022200 Malus domestica HOM05D003488 ORTHO05D004214 3.1e-06 57.4 411 23.6
FvH4_6g18580 Fragaria vesca HOM05D003488 ORTHO05D004214 4.0e-06 57.0 314 23.2
TPR.G11390 Trifolium pratense HOM05D003488 ORTHO05D004214 6.9e-06 56.2 378 21.7
Ciclev10011818m.g Citrus clementina HOM05D000312 ORTHO05D000221 9.0e-06 55.8 281 23.1
HanXRQChr03g0060681 Helianthus annuus HOM05D006588 ORTHO05D008272 9.0e-06 55.8 262 26.0
GSVIVG01033833001 Vitis vinifera HOM05D003488 ORTHO05D004214 9.0e-06 55.8 355 23.1


User provided reference genes

Program Settings