Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0017538 Sechium edule HOM05D004131 ORTHO05D004778 2.0e-138 495.7 244 100.0
Sed0002263 Sechium edule HOM05D004131 ORTHO05D004778 1.6e-31 140.6 158 55.1
Rhsim02G0086100 Rhododendron simsii HOM05D004131 ORTHO05D004778 7.5e-13 78.6 58 65.5
arahy.Tifrunner.gnm1.ann1.GY80IK Arachis hypogaea HOM05D004131 ORTHO05D004778 9.9e-13 78.2 44 84.1
RhsimUnG0015600 Rhododendron simsii HOM05D004131 ORTHO05D004778 1.3e-12 77.8 35 94.3
vmacro15701 Vaccinium macrocarpon HOM05D004131 ORTHO05D004778 1.3e-12 77.8 42 81.0
VMungo0251G3663 Vigna mungo HOM05D004131 ORTHO05D004778 1.3e-12 77.8 35 97.1
CSS0000211 Camellia sinensis var. sinensis HOM05D004131 ORTHO05D004778 1.7e-12 77.4 34 100.0
CSS0046112 Camellia sinensis var. sinensis HOM05D004131 ORTHO05D004778 1.7e-12 77.4 34 100.0
Glyma.07G206100 Glycine max HOM05D004131 ORTHO05D004778 1.7e-12 77.4 34 100.0
Phvul.003G059400 Phaseolus vulgaris HOM05D004131 ORTHO05D004778 1.7e-12 77.4 34 100.0
QL10p058548 Quercus lobata HOM05D004131 ORTHO05D004778 1.7e-12 77.4 37 89.2
QL10p059325 Quercus lobata HOM05D004131 ORTHO05D004778 1.7e-12 77.4 37 89.2
Haze_11173 Corylus avellana HOM05D004131 ORTHO05D004778 2.9e-12 76.6 35 94.3
Haze_11178 Corylus avellana HOM05D004131 ORTHO05D004778 2.9e-12 76.6 35 94.3
Cfa021469 Carpinus fangiana HOM05D004131 ORTHO05D004778 3.7e-12 76.3 34 97.1
Potri.007G139900 Populus trichocarpa HOM05D004131 ORTHO05D004778 4.9e-12 75.9 34 94.1
Lju470A13T20 Lonicera japonica HOM05D004131 ORTHO05D004778 6.4e-12 75.5 35 94.3
CANSAT56G2001 Cannabis sativa HOM05D004131 ORTHO05D004778 8.3e-12 75.1 34 97.1
Ca_18622_v3 Cicer arietinum L. HOM05D004131 ORTHO05D004778 8.3e-12 75.1 34 97.1
Ca_18628_v3 Cicer arietinum L. HOM05D004131 ORTHO05D004778 8.3e-12 75.1 34 97.1
Glyma.02G138900 Glycine max HOM05D004131 ORTHO05D004778 8.3e-12 75.1 34 97.1
Lju470A13G17 Lonicera japonica HOM05D004131 ORTHO05D004778 8.3e-12 75.1 34 97.1
Medtr4g087630 Medicago truncatula HOM05D004131 ORTHO05D004778 8.3e-12 75.1 34 97.1
Psat7g119160 Pisum sativum HOM05D004131 ORTHO05D004778 8.3e-12 75.1 34 97.1
Prupe.7G267400 Prunus persica HOM05D004131 ORTHO05D004778 8.3e-12 75.1 34 97.1
RcHm_v2.0_Chr2g0084981 Rosa chinensis HOM05D004131 ORTHO05D004778 8.3e-12 75.1 34 97.1
SalBow3G2571 Salvia bowleyana HOM05D004131 ORTHO05D004778 8.3e-12 75.1 34 97.1
TPR.G23549 Trifolium pratense HOM05D004131 ORTHO05D004778 8.3e-12 75.1 34 97.1
HPP92_023727 Vanilla planifolia HOM05D004131 ORTHO05D004778 8.3e-12 75.1 34 94.1
ECA130G0002 Erigeron canadensis HOM05D004131 ORTHO05D004778 1.1e-11 74.7 34 94.1
ECA233G3286 Erigeron canadensis HOM05D004131 ORTHO05D004778 1.1e-11 74.7 34 94.1
HanXRQChr02g0059071 Helianthus annuus HOM05D004131 ORTHO05D004778 1.1e-11 74.7 34 94.1
Lsat_1_v5_gn_7_67880 Lactuca sativa HOM05D004131 ORTHO05D004778 1.1e-11 74.7 34 94.1
Lalb_Chr16g0384341 Lupinus albus HOM05D004131 ORTHO05D004778 1.1e-11 74.7 34 94.1
MBI07_g36705_MAGBIO Magnolia biondii HOM05D004131 ORTHO05D004778 1.4e-11 74.3 35 91.4
PSO017G4173 Papaver somniferum HOM05D004131 ORTHO05D004778 1.4e-11 74.3 34 91.2
PSO675G2278 Papaver somniferum HOM05D004131 ORTHO05D004778 1.4e-11 74.3 34 91.2
Sabra07G0113200 Salix brachista HOM05D004131 ORTHO05D004778 1.4e-11 74.3 34 91.2
Sabra07G0117600 Salix brachista HOM05D004131 ORTHO05D004778 1.4e-11 74.3 34 91.2
MELO3C022231.2 Cucumis melo HOM05D004131 ORTHO05D004778 1.9e-11 73.9 34 94.1
CsaV3_5G040580 Cucumis sativus L. HOM05D004131 ORTHO05D004778 1.9e-11 73.9 34 94.1
Migut.N03052 Erythranthe guttata HOM05D004131 ORTHO05D004778 1.9e-11 73.9 34 91.2
FvH4_1g00470 Fragaria vesca HOM05D004131 ORTHO05D004778 2.4e-11 73.6 34 91.2
FAN23G0024 Fragaria x ananassa HOM05D004131 ORTHO05D004778 2.4e-11 73.6 34 91.2
FAN26G1335 Fragaria x ananassa HOM05D004131 ORTHO05D004778 2.4e-11 73.6 34 91.2
FAN28G1052 Fragaria x ananassa HOM05D004131 ORTHO05D004778 2.4e-11 73.6 34 91.2
MD15G1147200 Malus domestica HOM05D004131 ORTHO05D004778 2.4e-11 73.6 34 94.1
Sabra17G0009400 Salix brachista HOM05D004131 ORTHO05D004778 2.4e-11 73.6 57 63.2
TAR362G1052 Trochodendron aralioides HOM05D004131 ORTHO05D004778 2.4e-11 73.6 33 97.0
GSVIVG01038193001 Vitis vinifera HOM05D004131 ORTHO05D004778 2.4e-11 73.6 34 94.1
Atru.chr4.1513 Acer truncatum HOM05D004131 ORTHO05D004778 3.2e-11 73.2 34 91.2
Ah.13g073340 Amaranthus hybridus HOM05D004131 ORTHO05D004778 3.2e-11 73.2 34 88.2
Ciclev10022332m.g Citrus clementina HOM05D004131 ORTHO05D004778 3.2e-11 73.2 34 91.2
Dinv18309 Davidia involucrata HOM05D004131 ORTHO05D004778 3.2e-11 73.2 34 91.2
Duzib212G0438 Durio zibethinus HOM05D004131 ORTHO05D004778 3.2e-11 73.2 34 91.2
Duzib268G1863 Durio zibethinus HOM05D004131 ORTHO05D004778 3.2e-11 73.2 34 91.2
Migut.G00833 Erythranthe guttata HOM05D004131 ORTHO05D004778 3.2e-11 73.2 34 91.2
Thhalv10006256m.g Eutrema salsugineum HOM05D004131 ORTHO05D004778 3.2e-11 73.2 52 65.4
Gohir.A10G146200 Gossypium hirsutum HOM05D004131 ORTHO05D004778 3.2e-11 73.2 34 91.2
Gorai.011G132700 Gossypium raimondii HOM05D004131 ORTHO05D004778 3.2e-11 73.2 34 91.2
Potri.017G010100 Populus trichocarpa HOM05D004131 ORTHO05D004778 3.2e-11 73.2 34 91.2
Aa31LG10G14050 Aethionema arabicum HOM05D004131 ORTHO05D004778 4.1e-11 72.8 34 91.2
Ah.07g202990 Amaranthus hybridus HOM05D004131 ORTHO05D004778 4.1e-11 72.8 34 88.2
BcaC02g10087 Brassica carinata HOM05D004131 ORTHO05D004778 4.1e-11 72.8 52 65.4
C04p32910 Brassica napus HOM05D004131 ORTHO05D004778 4.1e-11 72.8 52 65.4
BolC4t24854H Brassica oleracea HOM05D004131 ORTHO05D004778 4.1e-11 72.8 52 65.4
BraA04t15927Z Brassica rapa HOM05D004131 ORTHO05D004778 4.1e-11 72.8 52 65.4
SalBow6G7192 Salvia bowleyana HOM05D004131 ORTHO05D004778 4.1e-11 72.8 35 88.6
Sp5g03340 Schrenkiella parvula HOM05D004131 ORTHO05D004778 4.1e-11 72.8 34 91.2
CiPaw.02G123300 Carya illinoinensis HOM05D004131 ORTHO05D004778 5.4e-11 72.4 34 91.2
Nn7g37517 Nelumbo nucifera HOM05D004131 ORTHO05D004778 5.4e-11 72.4 35 88.6
THA.LOC104802336 Tarenaya hassleriana HOM05D004131 ORTHO05D004778 5.4e-11 72.4 34 91.2
THA.LOC104804159 Tarenaya hassleriana HOM05D004131 ORTHO05D004778 5.4e-11 72.4 34 91.2
unitig_8.g3637 Utricularia gibba HOM05D004131 ORTHO05D004778 5.4e-11 72.4 34 91.2
Actinidia18408 Actinidia chinensis HOM05D004131 ORTHO05D004778 7.1e-11 72.0 34 88.2
Aqoxy2G04165 Aquilegia oxysepala HOM05D004131 ORTHO05D004778 7.1e-11 72.0 34 88.2
AL5G41850 Arabidopsis lyrata HOM05D004131 ORTHO05D004778 7.1e-11 72.0 52 63.5
AT3G59800 Arabidopsis thaliana HOM05D004131 ORTHO05D004778 7.1e-11 72.0 52 63.5
CSS0004184 Camellia sinensis var. sinensis HOM05D004131 ORTHO05D004778 7.1e-11 72.0 34 88.2
CSS0028329 Camellia sinensis var. sinensis HOM05D004131 ORTHO05D004778 7.1e-11 72.0 34 88.2
CAN.G448.4 Capsicum annuum HOM05D004131 ORTHO05D004778 7.1e-11 72.0 34 88.2
CiPaw.01G198800 Carya illinoinensis HOM05D004131 ORTHO05D004778 7.1e-11 72.0 34 91.2
Cc03_g14990 Coffea canephora HOM05D004131 ORTHO05D004778 7.1e-11 72.0 34 88.2
COL.COLO4_04655 Corchorus olitorius HOM05D004131 ORTHO05D004778 7.1e-11 72.0 34 88.2
Dinv33225 Davidia involucrata HOM05D004131 ORTHO05D004778 7.1e-11 72.0 34 88.2
Gohir.D10G120800 Gossypium hirsutum HOM05D004131 ORTHO05D004778 7.1e-11 72.0 34 88.2
Lalb_Chr05g0218801 Lupinus albus HOM05D004131 ORTHO05D004778 7.1e-11 72.0 34 88.2
Manes.01G017500 Manihot esculenta HOM05D004131 ORTHO05D004778 7.1e-11 72.0 34 88.2
Nitab4.5_0000064g0030 Nicotiana tabacum HOM05D004131 ORTHO05D004778 7.1e-11 72.0 34 88.2
Nitab4.5_0005089g0010 Nicotiana tabacum HOM05D004131 ORTHO05D004778 7.1e-11 72.0 34 88.2
Peaxi162Scf00483g00111 Petunia axillaris HOM05D004131 ORTHO05D004778 7.1e-11 72.0 34 88.2
PGR042G3815 Punica granatum HOM05D004131 ORTHO05D004778 7.1e-11 72.0 34 88.2
Hund12374 Selenicereus undatus HOM05D004131 ORTHO05D004778 7.1e-11 72.0 34 85.3
TWI38G2196 Tripterygium wilfordii HOM05D004131 ORTHO05D004778 7.1e-11 72.0 34 88.2
TWI63G0908 Tripterygium wilfordii HOM05D004131 ORTHO05D004778 7.1e-11 72.0 34 88.2
Actinidia11437 Actinidia chinensis HOM05D004131 ORTHO05D004778 9.2e-11 71.6 34 88.2
Actinidia28972 Actinidia chinensis HOM05D004131 ORTHO05D004778 9.2e-11 71.6 34 88.2
A04p02020 Brassica napus HOM05D004131 ORTHO05D004778 9.2e-11 71.6 52 65.4
Eucgr.G01598 Eucalyptus grandis HOM05D004131 ORTHO05D004778 9.2e-11 71.6 34 88.2
Eucgr.L00027 Eucalyptus grandis HOM05D004131 ORTHO05D004778 9.2e-11 71.6 34 88.2
Lj6C265T11 Lonicera japonica HOM05D004131 ORTHO05D004778 9.2e-11 71.6 34 94.1
Lj4g0014155 Lotus japonicus HOM05D004131 ORTHO05D004778 9.2e-11 71.6 34 88.2
Sp4g25870 Schrenkiella parvula HOM05D004131 ORTHO05D004778 9.2e-11 71.6 34 88.2
ATR0743G176 Amborella trichopoda HOM05D004131 ORTHO05D004778 1.2e-10 71.2 34 88.2
CDE08G0022 Ceratophyllum demersum HOM05D004131 ORTHO05D004778 1.2e-10 71.2 34 88.2
SMO364G0381 Selaginella moellendorffii HOM05D004131 ORTHO05D004778 1.2e-10 71.2 34 88.2
MSTRG.24561 Avicennia marina HOM05D004131 ORTHO05D004778 1.6e-10 70.9 34 88.2
EL10Ac3g06119 Beta vulgaris HOM05D004131 ORTHO05D004778 1.6e-10 70.9 34 85.3
Sc13g0007290 Simmondsia chinensis HOM05D004131 ORTHO05D004778 1.6e-10 70.9 34 85.3
AT2G43795 Arabidopsis thaliana HOM05D004131 ORTHO05D004778 2.1e-10 70.5 34 85.3
MD02G1003900 Malus domestica HOM05D004131 ORTHO05D004778 2.1e-10 70.5 34 91.2
Solyc12g019470.2 Solanum lycopersicum HOM05D004131 ORTHO05D004778 2.1e-10 70.5 34 85.3
Sopen12g009750 Solanum pennellii HOM05D004131 ORTHO05D004778 2.1e-10 70.5 34 85.3
PGSC0003DMG400005367 Solanum tuberosum HOM05D004131 ORTHO05D004778 2.1e-10 70.5 34 85.3
AagrBONN_evm.TU.Sc2ySwM_344.2765 Anthoceros agrestis HOM05D004131 ORTHO05D004778 2.7e-10 70.1 34 85.3
BcaB02g08900 Brassica carinata HOM05D004131 ORTHO05D004778 2.7e-10 70.1 34 85.3
BcaC02g12362 Brassica carinata HOM05D004131 ORTHO05D004778 2.7e-10 70.1 34 85.3
A05p04000 Brassica napus HOM05D004131 ORTHO05D004778 2.7e-10 70.1 34 85.3
C04p04750 Brassica napus HOM05D004131 ORTHO05D004778 2.7e-10 70.1 34 85.3
BolC4t22105H Brassica oleracea HOM05D004131 ORTHO05D004778 2.7e-10 70.1 34 85.3
BraA05t19388Z Brassica rapa HOM05D004131 ORTHO05D004778 2.7e-10 70.1 34 85.3
Mapoly0055s0100 Marchantia polymorpha HOM05D004131 ORTHO05D004778 2.7e-10 70.1 34 85.3
Pp3c3_18840 Physcomitrium patens HOM05D004131 ORTHO05D004778 2.7e-10 70.1 34 85.3
THA.LOC104805841 Tarenaya hassleriana HOM05D004131 ORTHO05D004778 2.7e-10 70.1 34 88.2
Zm00001eb425720 Zea mays HOM05D004131 ORTHO05D004778 2.7e-10 70.1 33 87.9
BcaB02g08209 Brassica carinata HOM05D004131 ORTHO05D004778 3.5e-10 69.7 52 61.5
AUR62002422 Chenopodium quinoa HOM05D004131 ORTHO05D004778 4.6e-10 69.3 35 80.0
AUR62023766 Chenopodium quinoa HOM05D004131 ORTHO05D004778 4.6e-10 69.3 35 80.0
TAR636G2398 Trochodendron aralioides HOM05D004131 ORTHO05D004778 4.6e-10 69.3 34 82.4
Carub.0004s2633 Capsella rubella HOM05D004131 ORTHO05D004778 7.8e-10 68.6 34 85.3
AL4G42670 Arabidopsis lyrata HOM05D004131 ORTHO05D004778 1.0e-09 68.2 34 79.4
CARHR138980 Cardamine hirsuta HOM05D004131 ORTHO05D004778 1.0e-09 68.2 34 85.3
SEGI_19170 Sequoiadendron giganteum HOM05D004131 ORTHO05D004778 3.0e-09 66.6 34 76.5
BcaC07g40454 Brassica carinata HOM05D004131 ORTHO05D004778 7.3e-08 62.0 33 81.8
SGA_v2.0_scaffold37G14924 Striga asiatica HOM05D004131 ORTHO05D004778 3.1e-06 56.6 31 77.4
CARHR170140 Cardamine hirsuta HOM05D004131 ORTHO05D004778 4.0e-06 56.2 26 92.3
CBR_g6538 Chara braunii HOM05D004131 ORTHO05D004778 5.2e-06 55.8 30 76.7
Os04g0496600 Oryza sativa ssp. japonica HOM05D004131 ORTHO05D004778 5.2e-06 55.8 27 85.2


User provided reference genes

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