Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0017189 Sechium edule HOM05D003900 ORTHO05D005009 1.5e-191 673.7 686 100.0
ClCG09G009150 Citrullus lanatus HOM05D003900 ORTHO05D005009 2.3e-83 314.3 260 70.8
CsaV3_7G025780 Cucumis sativus L. HOM05D003900 ORTHO05D005009 1.3e-81 308.5 606 75.2
MELO3C029134.2 Cucumis melo HOM05D003900 ORTHO05D005009 1.5e-79 301.6 260 69.2
QL04p055515 Quercus lobata HOM05D003900 ORTHO05D005009 1.9e-53 214.9 203 54.2
GSVIVG01026966001 Vitis vinifera HOM05D003900 ORTHO05D005009 1.9e-53 214.9 205 53.2
Dinv43863 Davidia involucrata HOM05D003900 ORTHO05D005009 4.7e-52 210.3 214 47.7
MD07G1131300 Malus domestica HOM05D003900 ORTHO05D005009 4.7e-52 210.3 210 51.9
TWI23G0979 Tripterygium wilfordii HOM05D003900 ORTHO05D005009 1.0e-51 209.1 220 49.1
CiPaw.01G067500 Carya illinoinensis HOM05D003900 ORTHO05D005009 6.7e-51 206.5 211 49.8
MD01G1071400 Malus domestica HOM05D003900 ORTHO05D005009 8.8e-51 206.1 210 50.5
CSS0000093 Camellia sinensis var. sinensis HOM05D003900 ORTHO05D005009 1.2e-50 205.7 209 47.4
CSS0016355 Camellia sinensis var. sinensis HOM05D003900 ORTHO05D005009 1.2e-50 205.7 209 47.4
CiPaw.01G067300 Carya illinoinensis HOM05D003900 ORTHO05D005009 1.2e-50 205.7 204 50.0
Manes.01G252300 Manihot esculenta HOM05D003900 ORTHO05D005009 5.7e-50 203.4 215 48.4
CiPaw.01G066800 Carya illinoinensis HOM05D003900 ORTHO05D005009 9.7e-50 202.6 211 48.3
FAN04G0755 Fragaria x ananassa HOM05D003900 ORTHO05D005009 2.8e-49 201.1 204 52.5
Lj7C507T1 Lonicera japonica HOM05D003900 ORTHO05D005009 6.3e-49 199.9 244 45.1
PGR142G0969 Punica granatum HOM05D003900 ORTHO05D005009 1.4e-48 198.7 206 48.5
Rhsim07G0010500 Rhododendron simsii HOM05D003900 ORTHO05D005009 1.4e-48 198.7 210 47.6
FvH4_5g03011 Fragaria vesca HOM05D003900 ORTHO05D005009 1.8e-48 198.4 200 51.0
CiPaw.01G067100 Carya illinoinensis HOM05D003900 ORTHO05D005009 2.4e-48 198.0 215 47.0
FvH4_5g32150 Fragaria vesca HOM05D003900 ORTHO05D005009 2.4e-48 198.0 204 52.0
RcHm_v2.0_Chr7g0228211 Rosa chinensis HOM05D003900 ORTHO05D005009 2.4e-48 198.0 204 50.0
Cc02_g38560 Coffea canephora HOM05D003900 ORTHO05D005009 3.1e-48 197.6 249 50.2
Thecc.01G352500 Theobroma cacao HOM05D003900 ORTHO05D005009 3.1e-48 197.6 222 48.6
THA.LOC104817316 Tarenaya hassleriana HOM05D003900 ORTHO05D005009 1.6e-47 195.3 213 46.5
Actinidia20162 Actinidia chinensis HOM05D003900 ORTHO05D005009 2.7e-47 194.5 201 48.3
TAR629G0263 Trochodendron aralioides HOM05D003900 ORTHO05D005009 5.9e-47 193.4 208 45.2
Atru.chr5.581 Acer truncatum HOM05D003900 ORTHO05D005009 1.3e-46 192.2 214 48.1
A07p25540 Brassica napus HOM05D003900 ORTHO05D005009 1.7e-46 191.8 243 43.2
CiPaw.01G067200 Carya illinoinensis HOM05D003900 ORTHO05D005009 2.2e-46 191.4 211 46.4
Haze_15564 Corylus avellana HOM05D003900 ORTHO05D005009 2.9e-46 191.0 211 48.3
CARHR171850 Cardamine hirsuta HOM05D003900 ORTHO05D005009 3.8e-46 190.7 246 41.9
vmacro13229 Vaccinium macrocarpon HOM05D003900 ORTHO05D005009 3.8e-46 190.7 206 47.6
Dinv32521 Davidia involucrata HOM05D003900 ORTHO05D005009 5.0e-46 190.3 188 48.9
Nn1g01685 Nelumbo nucifera HOM05D003900 ORTHO05D005009 5.0e-46 190.3 202 47.5
Atru.chr5.563 Acer truncatum HOM05D003900 ORTHO05D005009 6.5e-46 189.9 215 46.5
Lj4g0005982 Lotus japonicus HOM05D003900 ORTHO05D005009 8.5e-46 189.5 219 47.0
Sc01g0003220 Simmondsia chinensis HOM05D003900 ORTHO05D005009 8.5e-46 189.5 219 44.3
AT3G61520 Arabidopsis thaliana HOM05D003900 ORTHO05D005009 1.1e-45 189.1 209 45.0
AT5G28370 Arabidopsis thaliana HOM05D003900 ORTHO05D005009 1.1e-45 189.1 209 45.0
AT5G28460 Arabidopsis thaliana HOM05D003900 ORTHO05D005009 1.1e-45 189.1 209 45.0
CiPaw.01G066600 Carya illinoinensis HOM05D003900 ORTHO05D005009 1.1e-45 189.1 211 45.0
TPR.G2949 Trifolium pratense HOM05D003900 ORTHO05D005009 1.1e-45 189.1 204 48.0
AL5G43880 Arabidopsis lyrata HOM05D003900 ORTHO05D005009 1.5e-45 188.7 209 45.5
BcaB02g07375 Brassica carinata HOM05D003900 ORTHO05D005009 1.5e-45 188.7 216 44.4
BolC6t37920H Brassica oleracea HOM05D003900 ORTHO05D005009 1.5e-45 188.7 210 46.2
BraA07t30195Z Brassica rapa HOM05D003900 ORTHO05D005009 1.5e-45 188.7 243 42.4
FAN10G3614 Fragaria x ananassa HOM05D003900 ORTHO05D005009 1.5e-45 188.7 251 43.8
Prupe.2G177500 Prunus persica HOM05D003900 ORTHO05D005009 1.5e-45 188.7 208 49.0
C06p27530 Brassica napus HOM05D003900 ORTHO05D005009 1.9e-45 188.3 210 46.2
FAN01G0431 Fragaria x ananassa HOM05D003900 ORTHO05D005009 1.9e-45 188.3 251 43.8
Aa31LG10G15460 Aethionema arabicum HOM05D003900 ORTHO05D005009 2.5e-45 188.0 204 46.6
FvH4_7g15360 Fragaria vesca HOM05D003900 ORTHO05D005009 2.5e-45 188.0 251 43.0
HanXRQChr04g0120801 Helianthus annuus HOM05D003900 ORTHO05D005009 2.5e-45 188.0 207 45.4
Carub.0005s2821 Capsella rubella HOM05D003900 ORTHO05D005009 3.2e-45 187.6 209 45.0
RcHm_v2.0_Chr1g0357681 Rosa chinensis HOM05D003900 ORTHO05D005009 3.2e-45 187.6 249 50.6
Potri.014G090400 Populus trichocarpa HOM05D003900 ORTHO05D005009 7.2e-45 186.4 211 45.5
FAN06G0440 Fragaria x ananassa HOM05D003900 ORTHO05D005009 9.4e-45 186.0 251 43.4
BcaC08g45129 Brassica carinata HOM05D003900 ORTHO05D005009 1.2e-44 185.7 210 46.2
CiPaw.01G067400 Carya illinoinensis HOM05D003900 ORTHO05D005009 1.2e-44 185.7 212 45.8
Oeu015216.1 Olea europaea HOM05D003900 ORTHO05D005009 1.2e-44 185.7 195 50.3
Sabra14G0065500 Salix brachista HOM05D003900 ORTHO05D005009 1.2e-44 185.7 211 46.4
CANSAT56G3111 Cannabis sativa HOM05D003900 ORTHO05D005009 1.6e-44 185.3 205 47.8
FAN03G2211 Fragaria x ananassa HOM05D003900 ORTHO05D005009 4.7e-44 183.7 251 42.6
Duzib138G1643 Durio zibethinus HOM05D003900 ORTHO05D005009 1.0e-43 182.6 210 46.2
Aa31LG1G27520 Aethionema arabicum HOM05D003900 ORTHO05D005009 1.8e-43 181.8 214 43.9
AUR62004412 Chenopodium quinoa HOM05D003900 ORTHO05D005009 1.8e-43 181.8 213 43.7
Manes.05G029400 Manihot esculenta HOM05D003900 ORTHO05D005009 3.0e-43 181.0 215 45.1
COL.COLO4_12777 Corchorus olitorius HOM05D003900 ORTHO05D005009 5.2e-43 180.3 205 46.3
Nitab4.5_0010695g0010 Nicotiana tabacum HOM05D003900 ORTHO05D005009 1.5e-42 178.7 209 43.5
Sp4g28170 Schrenkiella parvula HOM05D003900 ORTHO05D005009 1.5e-42 178.7 214 43.0
Thhalv10022571m.g Eutrema salsugineum HOM05D003900 ORTHO05D005009 4.4e-42 177.2 242 41.3
Phvul.002G326200 Phaseolus vulgaris HOM05D003900 ORTHO05D005009 5.7e-42 176.8 221 43.0
Duzib133G1046 Durio zibethinus HOM05D003900 ORTHO05D005009 7.5e-42 176.4 209 46.4
Medtr8g098755 Medicago truncatula HOM05D003900 ORTHO05D005009 7.5e-42 176.4 199 45.7
Nitab4.5_0000915g0110 Nicotiana tabacum HOM05D003900 ORTHO05D005009 1.7e-41 175.3 209 42.6
Lalb_Chr04g0259301 Lupinus albus HOM05D003900 ORTHO05D005009 2.2e-41 174.9 214 45.3
arahy.Tifrunner.gnm1.ann1.U9H0N8 Arachis hypogaea HOM05D003900 ORTHO05D005009 4.8e-41 173.7 215 43.7
VMungo0251G1173 Vigna mungo HOM05D003900 ORTHO05D005009 4.8e-41 173.7 223 43.0
Lsat_1_v5_gn_7_2720 Lactuca sativa HOM05D003900 ORTHO05D005009 8.3e-41 172.9 207 40.6
Psat7g005640 Pisum sativum HOM05D003900 ORTHO05D005009 1.1e-40 172.6 198 44.9
Thhalv10001319m.g Eutrema salsugineum HOM05D003900 ORTHO05D005009 1.8e-40 171.8 219 42.9
Gohir.D12G110200 Gossypium hirsutum HOM05D003900 ORTHO05D005009 2.4e-40 171.4 210 43.3
CAN.G78.130 Capsicum annuum HOM05D003900 ORTHO05D005009 3.1e-40 171.0 208 40.9
Gorai.008G119500 Gossypium raimondii HOM05D003900 ORTHO05D005009 3.1e-40 171.0 210 43.8
SGA_v2.0_scaffold4G02283 Striga asiatica HOM05D003900 ORTHO05D005009 5.4e-40 170.2 204 42.6
AUR62022618 Chenopodium quinoa HOM05D003900 ORTHO05D005009 7.0e-40 169.9 210 42.9
PSO266G0010 Papaver somniferum HOM05D003900 ORTHO05D005009 7.0e-40 169.9 215 38.1
Migut.B01798 Erythranthe guttata HOM05D003900 ORTHO05D005009 9.1e-40 169.5 206 44.2
PSO384G0446 Papaver somniferum HOM05D003900 ORTHO05D005009 2.7e-39 167.9 214 38.3
PGSC0003DMG400000195 Solanum tuberosum HOM05D003900 ORTHO05D005009 2.7e-39 167.9 214 41.6
Eucgr.E00097 Eucalyptus grandis HOM05D003900 ORTHO05D005009 3.5e-39 167.5 208 44.2
Solyc01g095110.4 Solanum lycopersicum HOM05D003900 ORTHO05D005009 5.9e-39 166.8 205 42.0
Glyma.16G031800 Glycine max HOM05D003900 ORTHO05D005009 2.3e-38 164.9 209 42.6
arahy.Tifrunner.gnm1.ann1.K45FBX Arachis hypogaea HOM05D003900 ORTHO05D005009 3.8e-38 164.1 215 41.9
FAN06G2614 Fragaria x ananassa HOM05D003900 ORTHO05D005009 5.0e-38 163.7 205 42.0
Sopen01g038900 Solanum pennellii HOM05D003900 ORTHO05D005009 6.6e-38 163.3 210 41.9
Gohir.A12G106900 Gossypium hirsutum HOM05D003900 ORTHO05D005009 1.1e-37 162.5 210 41.9
FAN10G1060 Fragaria x ananassa HOM05D003900 ORTHO05D005009 1.9e-37 161.8 221 43.4
Peaxi162Scf00020g00155 Petunia axillaris HOM05D003900 ORTHO05D005009 1.9e-37 161.8 208 39.9
Ah.15g096610 Amaranthus hybridus HOM05D003900 ORTHO05D005009 2.5e-37 161.4 209 42.1
FAN06G4981 Fragaria x ananassa HOM05D003900 ORTHO05D005009 5.5e-37 160.2 205 41.5
ECA236G1505 Erigeron canadensis HOM05D003900 ORTHO05D005009 1.8e-35 155.2 190 42.6
SalBow3G3666 Salvia bowleyana HOM05D003900 ORTHO05D005009 2.3e-35 154.8 203 38.9
EL10Ac1g00355 Beta vulgaris HOM05D003900 ORTHO05D005009 3.0e-35 154.5 215 40.5
MBI11_g19575_MAGBIO Magnolia biondii HOM05D003900 ORTHO05D005009 6.8e-35 153.3 207 37.2
RcHm_v2.0_Chr5g0017031 Rosa chinensis HOM05D003900 ORTHO05D005009 1.2e-31 142.5 151 49.7
Ca_17228_v3 Cicer arietinum L. HOM05D000113 ORTHO05D005009 3.8e-30 137.5 200 41.5
ATR0721G158 Amborella trichopoda HOM05D003900 ORTHO05D005009 1.1e-29 136.0 189 41.3
RcHm_v2.0_Chr3g0468501 Rosa chinensis HOM05D003900 ORTHO05D005009 9.5e-29 132.9 200 41.0
Aqoxy7G01955 Aquilegia oxysepala HOM05D003900 ORTHO05D005009 3.6e-28 131.0 331 29.3
FAN18G4460 Fragaria x ananassa HOM05D003900 ORTHO05D005009 8.0e-28 129.8 200 40.0
CDE10G0308 Ceratophyllum demersum HOM05D003834 ORTHO05D004483 2.3e-27 128.3 179 36.3
DCAR_025213 Daucus carota HOM05D003900 ORTHO05D005009 3.4e-26 124.4 210 34.8
Cfa003873 Carpinus fangiana HOM05D003900 ORTHO05D005009 9.8e-26 122.9 232 36.6
FAN18G1403 Fragaria x ananassa HOM05D003900 ORTHO05D005009 1.5e-21 109.0 98 54.1
Ciclev10019067m.g Citrus clementina HOM05D003900 ORTHO05D005009 3.3e-21 107.8 207 32.9
Medtr3g088810 Medicago truncatula HOM05D003900 ORTHO05D005009 6.2e-20 103.6 121 42.1
RcHm_v2.0_Chr7g0228291 Rosa chinensis HOM05D003900 ORTHO05D005009 3.4e-18 97.8 81 58.0
CARHR141390 Cardamine hirsuta HOM05D003900 ORTHO05D005009 5.8e-18 97.1 114 43.9
VMungo0251G0997 Vigna mungo HOM05D003900 ORTHO05D005009 2.9e-17 94.7 170 35.9
HPP92_011504 Vanilla planifolia HOM05D003900 ORTHO05D005009 3.7e-17 94.4 232 28.9
MBI11_g19576_MAGBIO Magnolia biondii HOM05D003900 ORTHO05D005009 1.0e-14 86.3 160 30.0
CAN.G874.71 Capsicum annuum HOM05D003900 ORTHO05D005009 1.9e-13 82.0 116 37.9
SEGI_36720 Sequoiadendron giganteum HOM05D003900 ORTHO05D005009 9.5e-13 79.7 176 31.8
Aqoxy4G00899 Aquilegia oxysepala HOM05D003900 ORTHO05D005009 4.0e-11 74.3 191 30.4
CAN.G430.2 Capsicum annuum HOM05D003900 ORTHO05D005009 4.0e-11 74.3 73 49.3
CAN.G853.45 Capsicum annuum HOM05D003900 ORTHO05D005009 5.8e-10 70.5 102 36.3
CARHR141380 Cardamine hirsuta HOM05D003900 ORTHO05D005009 1.1e-08 66.2 77 42.9
Zm00001eb280170 Zea mays HOM05D003900 ORTHO05D005009 1.1e-08 66.2 117 35.9
CAN.G460.4 Capsicum annuum HOM05D003900 ORTHO05D005009 1.4e-08 65.9 93 37.6
SEGI_22559 Sequoiadendron giganteum HOM05D003900 ORTHO05D005009 1.4e-08 65.9 85 40.0
SEGI_18390 Sequoiadendron giganteum HOM05D003900 ORTHO05D005009 1.9e-08 65.5 192 26.6
CAN.G609.3 Capsicum annuum HOM05D003900 ORTHO05D005009 5.4e-08 63.9 124 37.1
Cc07_g18990 Coffea canephora HOM05D000162 ORTHO05D000090 9.2e-08 63.2 170 30.0
Atru.BG.208.p Acer truncatum HOM05D000424 ORTHO05D000355 1.6e-07 62.4 100 34.0
Cpa.g.sc64.144 Carica papaya HOM05D000424 ORTHO05D000355 1.6e-07 62.4 107 29.0
Lj4g0021408 Lotus japonicus HOM05D003900 ORTHO05D015804 1.6e-07 62.4 146 30.1
Sc12g0006230 Simmondsia chinensis HOM05D000001 ORTHO05D012157 1.6e-07 62.4 202 25.2
Nitab4.5_0009549g0060 Nicotiana tabacum HOM05D007956 ORTHO05D010042 2.1e-07 62.0 141 28.4
SEGI_08205 Sequoiadendron giganteum HOM05D003900 ORTHO05D005009 3.5e-07 61.2 91 36.3
SEGI_36951 Sequoiadendron giganteum HOM05D003900 ORTHO05D005009 6.0e-07 60.5 142 26.1
CAN.G1005.1 Capsicum annuum HOM05D003900 ORTHO05D005009 1.7e-06 58.9 60 45.0
SEGI_28461 Sequoiadendron giganteum HOM05D000004 ORTHO05D000002 1.7e-06 58.9 88 33.0
CSS0037549 Camellia sinensis var. sinensis HOM05D000891 ORTHO05D000761 2.3e-06 58.5 201 21.4
Lalb_Chr10g0091291 Lupinus albus HOM05D008684 ORTHO05D010796 2.3e-06 58.5 225 24.0
PGR083G2073 Punica granatum HOM05D003039 ORTHO05D008410 3.0e-06 58.2 202 24.3
CDE09G0095 Ceratophyllum demersum HOM05D006232 ORTHO05D007746 3.9e-06 57.8 176 25.6
AUR62025831 Chenopodium quinoa HOM05D006232 ORTHO05D007746 3.9e-06 57.8 180 27.8
CAN.G1005.2 Capsicum annuum HOM05D003900 ORTHO05D005009 5.1e-06 57.4 54 50.0
Oeu014937.1 Olea europaea HOM05D000300 ORTHO05D000383 5.1e-06 57.4 173 27.2
SEGI_03438 Sequoiadendron giganteum HOM05D003900 ORTHO05D005009 6.6e-06 57.0 91 34.1
TPR.G17150 Trifolium pratense HOM05D007212 ORTHO05D009094 6.6e-06 57.0 120 30.8
Aqoxy2G02642 Aquilegia oxysepala HOM05D003900 ORTHO05D016547 8.6e-06 56.6 252 23.0
EL10Ac1g00638 Beta vulgaris HOM05D006232 ORTHO05D007746 8.6e-06 56.6 174 25.9
CDE07G0667 Ceratophyllum demersum HOM05D001587 ORTHO05D002654 8.6e-06 56.6 101 31.7
SMO356G0401 Selaginella moellendorffii HOM05D007128 ORTHO05D000761 8.6e-06 56.6 202 20.8


User provided reference genes

Program Settings