Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0013576 Sechium edule HOM05D005050 ORTHO05D006198 1.0e-227 793.1 419 100.0
ClCG05G009900 Citrullus lanatus HOM05D005050 ORTHO05D006198 9.7e-194 680.2 421 87.2
CsaV3_3G018690 Cucumis sativus L. HOM05D005050 ORTHO05D006198 5.9e-191 671.0 421 86.0
MELO3C019500.2 Cucumis melo HOM05D005050 ORTHO05D006198 2.9e-190 668.7 421 85.7
Sed0002635 Sechium edule HOM05D005050 ORTHO05D006198 2.9e-190 668.7 415 87.7
Gorai.002G001300 Gossypium raimondii HOM05D005050 ORTHO05D006198 3.2e-152 542.3 413 73.1
QL11p019153 Quercus lobata HOM05D005050 ORTHO05D006198 2.1e-151 539.7 424 71.7
Gohir.A01G001100 Gossypium hirsutum HOM05D005050 ORTHO05D006198 4.6e-151 538.5 410 73.2
Thecc.02G041900 Theobroma cacao HOM05D005050 ORTHO05D006198 3.0e-150 535.8 411 72.0
Duzib052G0527 Durio zibethinus HOM05D005050 ORTHO05D006198 3.9e-150 535.4 412 72.8
Gohir.D01G000800 Gossypium hirsutum HOM05D005050 ORTHO05D006198 3.9e-150 535.4 413 72.2
Cfa005552 Carpinus fangiana HOM05D005050 ORTHO05D006198 8.6e-150 534.3 425 70.8
Manes.10G132900 Manihot esculenta HOM05D005050 ORTHO05D006198 2.1e-148 529.6 420 72.1
TAR628G0295 Trochodendron aralioides HOM05D005050 ORTHO05D006198 2.1e-148 529.6 420 71.9
FAN04G2386 Fragaria x ananassa HOM05D005050 ORTHO05D006198 1.4e-147 526.9 420 70.5
FAN13G0813 Fragaria x ananassa HOM05D005050 ORTHO05D006198 2.3e-147 526.2 421 70.5
RcHm_v2.0_Chr7g0223331 Rosa chinensis HOM05D005050 ORTHO05D006198 3.1e-147 525.8 419 71.1
CiPaw.05G042200 Carya illinoinensis HOM05D005050 ORTHO05D006198 4.0e-147 525.4 414 71.7
Dinv19345 Davidia involucrata HOM05D005050 ORTHO05D006198 4.0e-147 525.4 421 70.8
Eucgr.G00618 Eucalyptus grandis HOM05D005050 ORTHO05D006198 5.2e-147 525.0 416 70.4
FvH4_5g29810 Fragaria vesca HOM05D005050 ORTHO05D006198 6.8e-147 524.6 420 70.5
Prupe.1G564400 Prunus persica HOM05D005050 ORTHO05D006198 2.0e-146 523.1 416 71.4
FAN18G3347 Fragaria x ananassa HOM05D005050 ORTHO05D006198 9.9e-146 520.8 420 70.2
Actinidia39062 Actinidia chinensis HOM05D005050 ORTHO05D006198 1.3e-145 520.4 419 69.9
PGR042G1149 Punica granatum HOM05D005050 ORTHO05D006198 1.7e-145 520.0 411 71.3
CSS0001826 Camellia sinensis var. sinensis HOM05D005050 ORTHO05D006198 9.2e-144 514.2 419 69.5
GSVIVG01029689001 Vitis vinifera HOM05D005050 ORTHO05D006198 1.2e-143 513.8 429 67.6
MSTRG.16540 Avicennia marina HOM05D005050 ORTHO05D006198 1.3e-142 510.4 422 67.5
MD15G1419700 Malus domestica HOM05D005050 ORTHO05D006198 1.3e-142 510.4 440 67.3
Cpa.g.sc2.30 Carica papaya HOM05D005050 ORTHO05D006198 1.7e-142 510.0 421 68.9
Ciclev10001338m.g Citrus clementina HOM05D005050 ORTHO05D006198 3.3e-141 505.8 416 70.0
MD08G1227300 Malus domestica HOM05D005050 ORTHO05D006198 7.3e-141 504.6 466 64.4
TWI59G1202 Tripterygium wilfordii HOM05D005050 ORTHO05D006198 3.6e-140 502.3 422 69.2
CANSAT11G1507 Cannabis sativa HOM05D005050 ORTHO05D006198 4.4e-138 495.4 413 69.2
Sabra01G0160800 Salix brachista HOM05D005050 ORTHO05D006198 3.8e-137 492.3 422 66.6
Rhsim11G0132400 Rhododendron simsii HOM05D005050 ORTHO05D006198 6.4e-137 491.5 442 65.2
HanXRQChr03g0066561 Helianthus annuus HOM05D005050 ORTHO05D006198 1.9e-136 490.0 410 68.5
Lj6g0001640 Lotus japonicus HOM05D005050 ORTHO05D006198 5.4e-136 488.4 413 69.0
TWI14G0535 Tripterygium wilfordii HOM05D005050 ORTHO05D006198 9.3e-136 487.6 422 68.5
TWI23G0447 Tripterygium wilfordii HOM05D005050 ORTHO05D006198 2.3e-134 483.0 419 67.5
Lalb_Chr12g0208631 Lupinus albus HOM05D005050 ORTHO05D006198 6.6e-134 481.5 406 69.2
FAN08G2278 Fragaria x ananassa HOM05D005050 ORTHO05D006198 1.5e-133 480.3 420 65.7
Cc02_g22180 Coffea canephora HOM05D005050 ORTHO05D006198 4.8e-132 475.3 426 65.3
COL.COLO4_17901 Corchorus olitorius HOM05D005050 ORTHO05D006198 1.1e-131 474.2 365 72.9
ECA240G2670 Erigeron canadensis HOM05D005050 ORTHO05D006198 1.4e-131 473.8 411 66.9
Hma1.2p1_0557F.1_g178270 Hydrangea macrophylla HOM05D005050 ORTHO05D006198 1.8e-131 473.4 421 66.7
arahy.Tifrunner.gnm1.ann1.X2Y1CG Arachis hypogaea HOM05D005050 ORTHO05D006198 2.0e-130 469.9 411 67.6
Atru.chr6.1005 Acer truncatum HOM05D005050 ORTHO05D006198 4.5e-130 468.8 425 65.6
arahy.Tifrunner.gnm1.ann1.V19TN9 Arachis hypogaea HOM05D005050 ORTHO05D006198 4.5e-130 468.8 409 68.2
SGA_v2.0_scaffold1G00335 Striga asiatica HOM05D005050 ORTHO05D006198 3.8e-129 465.7 458 59.6
VMungo0251G1671 Vigna mungo HOM05D005050 ORTHO05D006198 8.4e-129 464.5 421 65.8
TPR.G2134 Trifolium pratense HOM05D005050 ORTHO05D006198 1.4e-128 463.8 426 64.8
Phvul.006G211700 Phaseolus vulgaris HOM05D005050 ORTHO05D006198 3.2e-128 462.6 421 65.1
arahy.Tifrunner.gnm1.ann1.UX2R4L Arachis hypogaea HOM05D005050 ORTHO05D006198 4.2e-128 462.2 410 65.9
Lsat_1_v5_gn_9_116221 Lactuca sativa HOM05D005050 ORTHO05D006198 4.2e-128 462.2 433 64.4
Medtr2g007800 Medicago truncatula HOM05D005050 ORTHO05D006198 1.6e-127 460.3 415 65.8
Glyma.08G184100 Glycine max HOM05D005050 ORTHO05D006198 7.4e-125 451.4 417 64.5
PGSC0003DMG400029778 Solanum tuberosum HOM05D005050 ORTHO05D006198 2.1e-124 449.9 415 63.6
Duzib132G0934 Durio zibethinus HOM05D005050 ORTHO05D006198 1.8e-123 446.8 407 63.4
CiPaw.06G149400 Carya illinoinensis HOM05D005050 ORTHO05D006198 9.0e-123 444.5 408 65.0
Nn1g08554 Nelumbo nucifera HOM05D005050 ORTHO05D006198 2.0e-122 443.4 369 68.6
Nn5g27962 Nelumbo nucifera HOM05D005050 ORTHO05D006198 3.4e-122 442.6 426 63.8
Hma1.2p1_0557F.1_g178260 Hydrangea macrophylla HOM05D005050 ORTHO05D006198 7.6e-122 441.4 493 57.0
arahy.Tifrunner.gnm1.ann1.HMQ04Z Arachis hypogaea HOM05D005050 ORTHO05D006198 1.7e-121 440.3 411 63.5
AUR62025851 Chenopodium quinoa HOM05D005050 ORTHO05D006198 2.9e-121 439.5 406 61.3
MBI06_g01048_MAGBIO Magnolia biondii HOM05D005050 ORTHO05D006198 2.9e-121 439.5 419 62.8
Aqoxy5G02481 Aquilegia oxysepala HOM05D005050 ORTHO05D006198 1.1e-120 437.6 435 58.4
AT1G15200 Arabidopsis thaliana HOM05D005050 ORTHO05D006198 3.2e-120 436.0 405 63.2
Glyma.15G048700 Glycine max HOM05D005050 ORTHO05D006198 7.1e-120 434.9 371 68.2
Hund13068 Selenicereus undatus HOM05D005050 ORTHO05D006198 7.1e-120 434.9 420 61.7
PSO170G5110 Papaver somniferum HOM05D005050 ORTHO05D006198 2.7e-119 433.0 404 63.6
Solyc01g104560.3 Solanum lycopersicum HOM05D005050 ORTHO05D006198 2.7e-119 433.0 412 62.6
Carub.0001s1495 Capsella rubella HOM05D005050 ORTHO05D006198 3.5e-119 432.6 405 63.2
Migut.B00660 Erythranthe guttata HOM05D005050 ORTHO05D006198 4.6e-119 432.2 426 60.8
PSO782G5384 Papaver somniferum HOM05D005050 ORTHO05D006198 8.7e-118 427.9 399 64.4
CAN.G1352.15 Capsicum annuum HOM05D005050 ORTHO05D006198 1.6e-116 423.7 416 60.3
SalBow5G1811 Salvia bowleyana HOM05D005050 ORTHO05D006198 3.7e-116 422.5 423 58.9
DCAR_029238 Daucus carota HOM05D005050 ORTHO05D006198 4.8e-116 422.2 394 63.2
SalBow5G5549 Salvia bowleyana HOM05D005050 ORTHO05D006198 8.2e-116 421.4 423 58.6
Sp1g13510 Schrenkiella parvula HOM05D005050 ORTHO05D006198 3.1e-115 419.5 426 59.9
HPP92_002179 Vanilla planifolia HOM05D005050 ORTHO05D006198 4.0e-115 419.1 417 61.2
BcaB02g06585 Brassica carinata HOM05D005050 ORTHO05D006198 5.3e-115 418.7 423 58.9
Nitab4.5_0003071g0060 Nicotiana tabacum HOM05D005050 ORTHO05D006198 2.6e-114 416.4 411 60.3
HPP92_002226 Vanilla planifolia HOM05D005050 ORTHO05D006198 5.8e-114 415.2 417 60.7
Thhalv10007720m.g Eutrema salsugineum HOM05D005050 ORTHO05D006198 7.6e-114 414.8 367 65.9
Sopen01g047070 Solanum pennellii HOM05D005050 ORTHO05D006198 7.6e-114 414.8 413 60.8
AL1G27280 Arabidopsis lyrata HOM05D005050 ORTHO05D006198 8.4e-113 411.4 434 57.8
A06p11180 Brassica napus HOM05D005050 ORTHO05D006198 4.2e-112 409.1 426 58.2
TAR161G0004 Trochodendron aralioides HOM05D005050 ORTHO05D006198 9.3e-112 407.9 277 78.0
EL10Ac2g03230 Beta vulgaris HOM05D005050 ORTHO05D006198 1.3e-110 404.1 395 60.0
CDE12G0224 Ceratophyllum demersum HOM05D005050 ORTHO05D006198 1.3e-110 404.1 412 61.4
THA.LOC104805935 Tarenaya hassleriana HOM05D005050 ORTHO05D006198 1.8e-110 403.7 405 59.0
Potri.003G021900 Populus trichocarpa HOM05D005050 ORTHO05D006198 5.1e-110 402.1 402 61.2
Lj9A312G31 Lonicera japonica HOM05D005050 ORTHO05D006198 6.7e-110 401.7 424 57.8
Ah.10g032530 Amaranthus hybridus HOM05D005050 ORTHO05D006198 2.5e-109 399.8 416 57.0
BcaC05g25448 Brassica carinata HOM05D005050 ORTHO05D006198 3.3e-109 399.4 381 60.9
C05p13300 Brassica napus HOM05D005050 ORTHO05D006198 3.3e-109 399.4 381 60.9
Peaxi162Scf00011g00032 Petunia axillaris HOM05D005050 ORTHO05D006198 4.3e-109 399.1 421 56.5
Nitab4.5_0009907g0040 Nicotiana tabacum HOM05D005050 ORTHO05D006198 1.6e-108 397.1 413 57.4
SHI16611 Sapria himalayana HOM05D005050 ORTHO05D006198 8.2e-100 368.2 407 55.5
Oeu000199.1 Olea europaea HOM05D005050 ORTHO05D006198 1.8e-99 367.1 423 56.5
vmacro01791 Vaccinium macrocarpon HOM05D005050 ORTHO05D006198 4.1e-99 365.9 310 65.8
AUR62029865 Chenopodium quinoa HOM05D005050 ORTHO05D006198 9.1e-99 364.8 344 61.3
Aa31LG1G10 Aethionema arabicum HOM05D005050 ORTHO05D006198 1.9e-96 357.1 367 56.1
unitig_699.g19082 Utricularia gibba HOM05D005050 ORTHO05D006198 2.7e-95 353.2 458 50.7
Zm00001eb216800 Zea mays HOM05D005050 ORTHO05D006198 3.6e-95 352.8 411 53.5
Dinv24255 Davidia involucrata HOM05D005050 ORTHO05D006198 2.0e-93 347.1 292 68.8
ATR0121G012 Amborella trichopoda HOM05D005050 ORTHO05D006198 6.3e-92 342.0 392 55.6
CDE01G0517 Ceratophyllum demersum HOM05D005050 ORTHO05D006198 1.1e-91 341.3 419 54.9
BcaNung05518 Brassica carinata HOM05D005050 ORTHO05D006198 3.4e-90 336.3 417 53.5
Lalb_Chr07g0189191 Lupinus albus HOM05D005050 ORTHO05D006198 5.7e-85 318.9 303 63.4
Oeu026061.1 Olea europaea HOM05D005050 ORTHO05D006198 1.7e-81 307.4 262 66.0
Sc10g0004970 Simmondsia chinensis HOM05D005050 ORTHO05D006198 1.2e-79 301.2 321 59.8
unitig_27.g24937 Utricularia gibba HOM05D005050 ORTHO05D006198 3.0e-78 296.6 263 65.0
Potri.001G208200 Populus trichocarpa HOM05D005050 ORTHO05D006198 1.5e-77 294.3 271 65.7
C08p45110 Brassica napus HOM05D005050 ORTHO05D006198 4.8e-76 289.3 336 52.4
Psat1g219800 Pisum sativum HOM05D005050 ORTHO05D006198 2.0e-74 283.9 265 64.5
BcaB03g14555 Brassica carinata HOM05D005050 ORTHO05D006198 3.2e-72 276.6 293 58.0
CARHR015720 Cardamine hirsuta HOM05D005050 ORTHO05D006198 4.0e-70 269.6 262 63.0
arahy.Tifrunner.gnm1.ann1.5TH0SF Arachis hypogaea HOM05D005050 ORTHO05D006198 9.8e-69 265.0 265 62.3
BraA06t24298Z Brassica rapa HOM05D005050 ORTHO05D006198 1.1e-67 261.5 268 60.8
CANSAT25G2757 Cannabis sativa HOM05D005050 ORTHO05D006198 1.1e-67 261.5 192 74.5
BolC5t30067H Brassica oleracea HOM05D005050 ORTHO05D006198 2.4e-67 260.4 262 61.1
AagrBONN_evm.TU.Sc2ySwM_344.3376 Anthoceros agrestis HOM05D005050 ORTHO05D006198 4.1e-67 259.6 416 44.2
BolC8t52057H Brassica oleracea HOM05D005050 ORTHO05D006198 1.2e-66 258.1 271 60.1
AUR62018227 Chenopodium quinoa HOM05D005050 ORTHO05D006198 3.5e-66 256.5 336 51.8
Mapoly0066s0029 Marchantia polymorpha HOM05D005050 ORTHO05D006198 1.5e-64 251.1 393 44.5
BraA09t41526Z Brassica rapa HOM05D005050 ORTHO05D006198 5.4e-59 232.6 271 52.4
Os03g0701900 Oryza sativa ssp. japonica HOM05D005050 ORTHO05D006198 1.3e-57 228.0 265 55.5
Pp3c14_12690 Physcomitrium patens HOM05D005050 ORTHO05D006198 3.8e-57 226.5 437 39.1
Zm00001eb054200 Zea mays HOM05D005050 ORTHO05D006198 2.8e-55 220.3 262 55.3
CANSAT56G3350 Cannabis sativa HOM05D005050 ORTHO05D006198 4.9e-52 209.5 135 79.3
CANSAT35G1170 Cannabis sativa HOM05D005050 ORTHO05D006198 8.3e-52 208.8 136 78.7
Pp3c17_13310 Physcomitrium patens HOM05D005050 ORTHO05D006198 3.5e-50 203.4 425 39.1
BcaB03g14557 Brassica carinata HOM05D005050 ORTHO05D006198 6.8e-46 189.1 182 60.4
Oeu026060.1 Olea europaea HOM05D005050 ORTHO05D006198 6.8e-46 189.1 183 62.3
Haze_01617 Corylus avellana HOM05D005050 ORTHO05D006198 8.9e-46 188.7 197 58.9
SMO116G0236 Selaginella moellendorffii HOM05D005050 ORTHO05D006198 2.2e-44 184.1 418 39.7
Haze_01615 Corylus avellana HOM05D005050 ORTHO05D006198 4.6e-42 176.4 125 72.8
BcaB03g14552 Brassica carinata HOM05D005050 ORTHO05D006198 6.2e-39 166.0 144 61.1
CBR_g5711 Chara braunii HOM05D005050 ORTHO05D006198 6.2e-39 166.0 530 31.9
CARHR015710 Cardamine hirsuta HOM05D005050 ORTHO05D006198 1.2e-34 151.8 143 58.7
unitig_27.g24936 Utricularia gibba HOM05D000188 ORTHO05D005820 3.4e-29 133.7 142 50.0
BcaNung06586 Brassica carinata HOM05D005050 ORTHO05D006198 7.6e-21 105.9 130 53.1
Sabra03G0013800 Salix brachista HOM05D005050 ORTHO05D006198 2.1e-15 87.8 229 38.9
Actinidia00225 Actinidia chinensis HOM05D000304 ORTHO05D000185 8.1e-15 85.9 185 33.5
Zm00001eb142240 Zea mays HOM05D000061 ORTHO05D000050 4.3e-08 63.5 38 76.3
Cre09.g387300 Chlamydomonas reinhardtii HOM05D005050 ORTHO05D006198 9.6e-08 62.4 108 40.7
Zm00001eb244490 Zea mays HOM05D001326 ORTHO05D002471 1.8e-06 58.2 55 56.4


User provided reference genes

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