Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0013156 Sechium edule HOM05D003841 ORTHO05D004602 2.5e-165 585.5 315 100.0
ClCG05G014990 Citrullus lanatus HOM05D003841 ORTHO05D004602 1.1e-120 437.2 317 78.5
CsaV3_3G022650 Cucumis sativus L. HOM05D003841 ORTHO05D004602 1.1e-104 384.0 319 70.5
MELO3C018156.2 Cucumis melo HOM05D003841 ORTHO05D004602 3.0e-102 375.9 319 69.6
QL08p014515 Quercus lobata HOM05D003841 ORTHO05D004602 1.5e-50 204.1 330 43.6
Sed0016497 Sechium edule HOM05D003841 ORTHO05D004602 4.2e-48 196.1 229 57.6
Dinv02831 Davidia involucrata HOM05D003841 ORTHO05D004602 1.9e-45 187.2 343 41.1
Actinidia35303 Actinidia chinensis HOM05D003841 ORTHO05D004602 1.4e-43 181.0 352 38.1
Lalb_Chr22g0357311 Lupinus albus HOM05D003841 ORTHO05D004602 9.0e-43 178.3 331 41.7
arahy.Tifrunner.gnm1.ann1.GYU1HX Arachis hypogaea HOM05D003841 ORTHO05D004602 4.5e-42 176.0 338 40.8
Manes.15G079400 Manihot esculenta HOM05D003841 ORTHO05D004602 4.5e-42 176.0 333 39.3
CSS0048456 Camellia sinensis var. sinensis HOM05D003841 ORTHO05D004602 5.9e-42 175.6 341 40.8
Lj1A861T58 Lonicera japonica HOM05D003841 ORTHO05D004602 1.3e-41 174.5 328 38.4
CANSAT11G1059 Cannabis sativa HOM05D003841 ORTHO05D004602 5.0e-41 172.6 313 38.7
Ciclev10008955m.g Citrus clementina HOM05D003841 ORTHO05D004602 6.5e-41 172.2 330 40.3
Cfa020471 Carpinus fangiana HOM05D003841 ORTHO05D004602 8.5e-41 171.8 316 40.8
EL10Ac4g08014 Beta vulgaris HOM05D003841 ORTHO05D004602 1.4e-40 171.0 317 42.3
Dinv22328 Davidia involucrata HOM05D003841 ORTHO05D004602 2.5e-40 170.2 332 38.0
CiPaw.12G124700 Carya illinoinensis HOM05D003841 ORTHO05D004602 1.6e-39 167.5 321 40.5
arahy.Tifrunner.gnm1.ann1.SIF99T Arachis hypogaea HOM05D003841 ORTHO05D004602 4.6e-39 166.0 337 38.6
TWI39G0875 Tripterygium wilfordii HOM05D003841 ORTHO05D004602 6.1e-39 165.6 341 37.5
MD11G1230100 Malus domestica HOM05D003841 ORTHO05D004602 1.0e-38 164.9 333 38.1
Potri.011G130000 Populus trichocarpa HOM05D003841 ORTHO05D004602 1.8e-38 164.1 334 38.9
FAN21G0547 Fragaria x ananassa HOM05D003841 ORTHO05D004602 3.0e-38 163.3 334 38.9
Gohir.A11G281600 Gossypium hirsutum HOM05D003841 ORTHO05D004602 3.0e-38 163.3 326 39.3
Gorai.007G317200 Gossypium raimondii HOM05D003841 ORTHO05D004602 5.1e-38 162.5 326 39.0
CSS0046033 Camellia sinensis var. sinensis HOM05D003841 ORTHO05D004602 6.7e-38 162.2 286 40.2
Potri.001G410100 Populus trichocarpa HOM05D003841 ORTHO05D004602 6.7e-38 162.2 334 37.4
Gohir.D11G294200 Gossypium hirsutum HOM05D003841 ORTHO05D004602 1.1e-37 161.4 326 39.0
Sabra16G0281100 Salix brachista HOM05D003841 ORTHO05D004602 1.5e-37 161.0 340 36.5
Rhsim06G0190700 Rhododendron simsii HOM05D003841 ORTHO05D004602 1.9e-37 160.6 329 39.5
Haze_09572 Corylus avellana HOM05D003841 ORTHO05D004602 7.4e-37 158.7 342 39.2
Nn1g06911 Nelumbo nucifera HOM05D003841 ORTHO05D004602 7.4e-37 158.7 330 37.3
Rhsim06G0189000 Rhododendron simsii HOM05D003841 ORTHO05D004602 7.4e-37 158.7 329 39.2
FAN11G1553 Fragaria x ananassa HOM05D003841 ORTHO05D004602 1.3e-36 157.9 330 38.5
Lsat_1_v5_gn_7_107821 Lactuca sativa HOM05D003841 ORTHO05D004602 1.7e-36 157.5 316 39.6
Peaxi162Scf01365g00027 Petunia axillaris HOM05D003841 ORTHO05D004602 2.8e-36 156.8 338 39.9
Cc05_g12980 Coffea canephora HOM05D003841 ORTHO05D004602 4.8e-36 156.0 330 37.3
AUR62029272 Chenopodium quinoa HOM05D003841 ORTHO05D004602 1.1e-35 154.8 320 39.7
FvH4_3g21510 Fragaria vesca HOM05D003841 ORTHO05D004602 1.4e-35 154.5 334 38.3
Actinidia10692 Actinidia chinensis HOM05D003841 ORTHO05D004602 1.8e-35 154.1 242 45.0
Nitab4.5_0000552g0100 Nicotiana tabacum HOM05D003841 ORTHO05D004602 2.4e-35 153.7 337 35.3
TAR627G0073 Trochodendron aralioides HOM05D003841 ORTHO05D004602 3.1e-35 153.3 347 34.9
Gohir.D13G147500 Gossypium hirsutum HOM05D003841 ORTHO05D004602 6.9e-35 152.1 324 38.0
COL.COLO4_09535 Corchorus olitorius HOM05D003841 ORTHO05D004602 9.1e-35 151.8 329 36.5
AUR62041149 Chenopodium quinoa HOM05D003841 ORTHO05D004602 1.2e-34 151.4 319 39.5
Duzib213G0276 Durio zibethinus HOM05D003841 ORTHO05D004602 1.2e-34 151.4 324 38.0
Thecc.07G059100 Theobroma cacao HOM05D003841 ORTHO05D004602 1.2e-34 151.4 327 38.5
HanXRQChr11g0332121 Helianthus annuus HOM05D003841 ORTHO05D004602 1.5e-34 151.0 335 37.9
Hund23360 Selenicereus undatus HOM05D003841 ORTHO05D004602 2.0e-34 150.6 321 38.9
RhsimUnG0254800 Rhododendron simsii HOM05D003841 ORTHO05D004602 2.6e-34 150.2 339 36.9
Gorai.013G165300 Gossypium raimondii HOM05D003841 ORTHO05D004602 3.4e-34 149.8 324 37.3
VMungo1127G0850 Vigna mungo HOM05D003841 ORTHO05D004602 3.4e-34 149.8 329 38.6
Ah.06g183230 Amaranthus hybridus HOM05D003841 ORTHO05D004602 5.9e-34 149.1 321 40.2
Lalb_Chr01g0006261 Lupinus albus HOM05D003841 ORTHO05D004602 5.9e-34 149.1 327 36.7
Lj3g0010893 Lotus japonicus HOM05D003841 ORTHO05D004602 1.7e-33 147.5 335 38.8
Gohir.A13G142900 Gossypium hirsutum HOM05D003841 ORTHO05D004602 2.9e-33 146.7 324 37.3
Prupe.4G197300 Prunus persica HOM05D003841 ORTHO05D004602 2.9e-33 146.7 331 36.6
Ca_18832_v3 Cicer arietinum L. HOM05D003841 ORTHO05D004602 3.8e-33 146.4 322 37.0
Ca_30091_v3 Cicer arietinum L. HOM05D003841 ORTHO05D004602 3.8e-33 146.4 322 37.0
Medtr4g081550 Medicago truncatula HOM05D003841 ORTHO05D004602 5.0e-33 146.0 315 35.9
Psat7g160280 Pisum sativum HOM05D003841 ORTHO05D004602 5.0e-33 146.0 327 36.1
FAN25G3758 Fragaria x ananassa HOM05D003841 ORTHO05D004602 6.5e-33 145.6 323 37.2
Nitab4.5_0003052g0050 Nicotiana tabacum HOM05D003841 ORTHO05D004602 6.5e-33 145.6 332 36.4
Phvul.011G146700 Phaseolus vulgaris HOM05D003841 ORTHO05D004602 6.5e-33 145.6 335 39.1
MD03G1215500 Malus domestica HOM05D003841 ORTHO05D004602 8.5e-33 145.2 326 36.8
TAR271G0006 Trochodendron aralioides HOM05D003841 ORTHO05D004602 1.1e-32 144.8 350 33.7
FAN16G3040 Fragaria x ananassa HOM05D003841 ORTHO05D004602 1.4e-32 144.4 330 36.1
Duzib170G0031 Durio zibethinus HOM05D003841 ORTHO05D004602 3.2e-32 143.3 328 36.0
Eucgr.F03390 Eucalyptus grandis HOM05D003841 ORTHO05D004602 3.2e-32 143.3 342 36.3
TPR.G34029 Trifolium pratense HOM05D003841 ORTHO05D004602 3.2e-32 143.3 328 36.0
TAR271G0005 Trochodendron aralioides HOM05D003841 ORTHO05D004602 4.2e-32 142.9 355 34.4
TWI38G0390 Tripterygium wilfordii HOM05D003841 ORTHO05D004602 5.5e-32 142.5 347 35.4
Oeu005438.1 Olea europaea HOM05D003841 ORTHO05D004602 7.2e-32 142.1 340 35.6
GSVIVG01014549001 Vitis vinifera HOM05D003841 ORTHO05D004602 1.2e-31 141.4 215 45.6
DCAR_022502 Daucus carota HOM05D003841 ORTHO05D004602 2.7e-31 140.2 327 36.1
Oeu052335.1 Olea europaea HOM05D003841 ORTHO05D004602 2.7e-31 140.2 328 33.5
PSO541G4862 Papaver somniferum HOM05D003841 ORTHO05D004602 3.6e-31 139.8 339 35.4
Lj8A163G39 Lonicera japonica HOM05D003841 ORTHO05D004602 6.1e-31 139.0 333 36.6
Solyc07g063870.3 Solanum lycopersicum HOM05D003841 ORTHO05D004602 6.1e-31 139.0 339 34.8
vmacro11787 Vaccinium macrocarpon HOM05D003841 ORTHO05D004602 6.1e-31 139.0 360 35.3
Sopen07g032000 Solanum pennellii HOM05D003841 ORTHO05D004602 7.9e-31 138.7 341 33.1
Glyma.06G262900 Glycine max HOM05D003841 ORTHO05D004602 1.0e-30 138.3 336 36.6
PSO675G5063 Papaver somniferum HOM05D003841 ORTHO05D004602 1.0e-30 138.3 337 35.0
PGSC0003DMG400019273 Solanum tuberosum HOM05D003841 ORTHO05D000515 2.3e-30 137.1 295 35.3
CARHR267820 Cardamine hirsuta HOM05D003841 ORTHO05D004602 8.8e-30 135.2 318 36.2
Migut.H01878 Erythranthe guttata HOM05D003841 ORTHO05D004602 4.4e-29 132.9 345 37.7
PSO675G0068 Papaver somniferum HOM05D003841 ORTHO05D004602 4.4e-29 132.9 289 36.3
Glyma.12G139800 Glycine max HOM05D003841 ORTHO05D004602 2.8e-28 130.2 348 36.5
THA.LOC104799894 Tarenaya hassleriana HOM05D003841 ORTHO05D004602 3.7e-28 129.8 329 34.0
DCAR_010006 Daucus carota HOM05D003841 ORTHO05D004602 4.8e-28 129.4 323 37.2
Glyma.13G284700 Glycine max HOM05D003841 ORTHO05D004602 1.1e-27 128.3 331 35.0
HPP92_004148 Vanilla planifolia HOM05D003841 ORTHO05D004602 1.1e-27 128.3 329 33.4
Hund02157 Selenicereus undatus HOM05D003841 ORTHO05D004602 2.4e-27 127.1 308 37.7
RcHm_v2.0_Chr5g0036951 Rosa chinensis HOM05D003841 ORTHO05D004602 4.1e-27 126.3 225 39.1
Zm00001eb413050 Zea mays HOM05D003841 ORTHO05D004602 7.0e-27 125.6 335 34.6
Lj3g0010292 Lotus japonicus HOM05D003841 ORTHO05D004602 1.2e-26 124.8 287 35.9
Aa31LG3G10490 Aethionema arabicum HOM05D003841 ORTHO05D004602 2.6e-26 123.6 325 35.4
Aqoxy1G03844 Aquilegia oxysepala HOM05D003841 ORTHO05D004602 5.9e-26 122.5 354 33.1
Carub.0008s1482 Capsella rubella HOM05D003841 ORTHO05D004602 1.0e-25 121.7 317 34.1
Zm00001eb171810 Zea mays HOM05D003841 ORTHO05D004602 1.7e-25 120.9 332 33.7
ECA236G3199 Erigeron canadensis HOM05D003841 ORTHO05D004602 2.2e-25 120.6 328 34.8
SGA_v2.0_scaffold9G05000 Striga asiatica HOM05D003841 ORTHO05D004602 2.2e-25 120.6 326 35.0
MSTRG.6876 Avicennia marina HOM05D003841 ORTHO05D004602 8.5e-25 118.6 328 34.5
Sp6g16510 Schrenkiella parvula HOM05D003841 ORTHO05D004602 8.5e-25 118.6 325 33.5
AL8G29910 Arabidopsis lyrata HOM05D003841 ORTHO05D004602 1.1e-24 118.2 321 33.6
AT5G54540 Arabidopsis thaliana HOM05D003841 ORTHO05D004602 1.1e-24 118.2 315 33.0
SalBow7G4379 Salvia bowleyana HOM05D003841 ORTHO05D004602 1.1e-24 118.2 329 32.8
Glyma.12G216500 Glycine max HOM05D003841 ORTHO05D004602 1.9e-24 117.5 253 36.4
MBI18_g38396_MAGBIO Magnolia biondii HOM05D003841 ORTHO05D004602 2.5e-24 117.1 322 32.9
MSTRG.14400 Avicennia marina HOM05D003841 ORTHO05D004602 7.2e-24 115.5 289 36.3
arahy.Tifrunner.gnm1.ann1.SKE74K Arachis hypogaea HOM05D003841 ORTHO05D004602 9.4e-24 115.2 329 35.0
Sc03g0009430 Simmondsia chinensis HOM05D003841 ORTHO05D004602 1.2e-23 114.8 320 30.6
A02p10210 Brassica napus HOM05D003841 ORTHO05D004602 3.6e-23 113.2 318 33.3
Thhalv10014255m.g Eutrema salsugineum HOM05D003841 ORTHO05D004602 4.7e-23 112.8 319 33.2
vmacro09595 Vaccinium macrocarpon HOM05D003841 ORTHO05D004602 6.1e-23 112.5 481 28.3
C02p16910 Brassica napus HOM05D003841 ORTHO05D004602 2.3e-22 110.5 321 33.6
TAR623G1765 Trochodendron aralioides HOM05D003841 ORTHO05D004602 3.0e-22 110.2 335 32.5
BraA10t43276Z Brassica rapa HOM05D003841 ORTHO05D004602 3.9e-22 109.8 321 32.4
BcaB08g35813 Brassica carinata HOM05D003841 ORTHO05D004602 1.5e-21 107.8 317 33.8
Os08g0179900 Oryza sativa ssp. japonica HOM05D003841 ORTHO05D004602 1.5e-21 107.8 248 34.3
PSO541G5517 Papaver somniferum HOM05D003841 ORTHO05D004602 2.6e-21 107.1 225 37.8
A10p11770 Brassica napus HOM05D003841 ORTHO05D004602 4.4e-21 106.3 319 32.3
CDE05G3666 Ceratophyllum demersum HOM05D003841 ORTHO05D004602 5.7e-21 105.9 324 32.1
unitig_746.g26819 Utricularia gibba HOM05D003841 ORTHO05D004602 5.7e-21 105.9 248 35.1
BraA02t06092Z Brassica rapa HOM05D003841 ORTHO05D004602 9.7e-21 105.1 319 33.5
BcaC04g20329 Brassica carinata HOM05D003841 ORTHO05D004602 2.8e-20 103.6 319 31.7
arahy.Tifrunner.gnm1.ann1.SRRR95 Arachis hypogaea HOM05D003841 ORTHO05D004602 3.7e-20 103.2 334 33.5
Migut.M01831 Erythranthe guttata HOM05D003841 ORTHO05D004602 4.8e-20 102.8 316 32.3
Sabra11G0117400 Salix brachista HOM05D003841 ORTHO05D004602 6.3e-20 102.4 223 39.5
Actinidia05162 Actinidia chinensis HOM05D003841 ORTHO05D004602 8.2e-20 102.1 353 31.2
C09p44880 Brassica napus HOM05D003841 ORTHO05D004602 3.1e-19 100.1 319 31.3
BolC9t57359H Brassica oleracea HOM05D003841 ORTHO05D004602 3.1e-19 100.1 332 31.0
DCAR_008683 Daucus carota HOM05D003841 ORTHO05D004602 3.1e-19 100.1 320 30.0
SGA_v2.0_scaffold70G23570 Striga asiatica HOM05D003841 ORTHO05D004602 5.3e-19 99.4 318 32.4
CDE05G3612 Ceratophyllum demersum HOM05D003841 ORTHO05D004602 1.3e-17 94.7 244 32.8
CAN.G64.40 Capsicum annuum HOM05D003841 ORTHO05D004602 1.7e-17 94.4 128 41.4
MELO3C016604.2 Cucumis melo HOM05D003841 ORTHO05D004602 2.9e-17 93.6 327 29.4
Gohir.D11G294233 Gossypium hirsutum HOM05D003841 ORTHO05D004602 2.9e-17 93.6 274 32.8
Gorai.007G317300 Gossypium raimondii HOM05D003841 ORTHO05D004602 3.8e-17 93.2 268 32.5
Gohir.A11G281650 Gossypium hirsutum HOM05D003841 ORTHO05D004602 6.5e-17 92.4 269 35.3
ClCG10G006140 Citrullus lanatus HOM05D003841 ORTHO05D004602 1.1e-16 91.7 276 31.5
ATR0804G047 Amborella trichopoda HOM05D003841 ORTHO05D004602 1.5e-16 91.3 337 29.1
unitig_899.g15555 Utricularia gibba HOM05D003841 ORTHO05D004602 1.5e-16 91.3 330 30.6
HPP92_005894 Vanilla planifolia HOM05D003841 ORTHO05D004602 1.5e-16 91.3 327 29.4
Lsat_1_v5_gn_2_59361 Lactuca sativa HOM05D003841 ORTHO05D004602 2.5e-16 90.5 167 39.5
BcaB05g22143 Brassica carinata HOM05D003841 ORTHO05D004602 2.3e-14 84.0 215 32.1
Cfa021072 Carpinus fangiana HOM05D003841 ORTHO05D004602 1.2e-13 81.6 124 47.6
Cpa.g.sc80.126 Carica papaya HOM05D003841 ORTHO05D004602 9.7e-13 78.6 194 37.6
Sed0013484 Sechium edule HOM05D003841 ORTHO05D004602 9.7e-13 78.6 280 28.2
PSO384G0968 Papaver somniferum HOM05D003841 ORTHO05D004602 1.3e-12 78.2 260 28.5
CsaV3_3G005690 Cucumis sativus L. HOM05D003841 ORTHO05D004602 1.7e-12 77.8 276 29.0
CAN.G1160.11 Capsicum annuum HOM05D003841 ORTHO05D004602 6.3e-12 75.9 214 29.0
CAN.G952.3 Capsicum annuum HOM05D003841 ORTHO05D004602 6.3e-12 75.9 116 38.8
PSO339G6399 Papaver somniferum HOM05D003841 ORTHO05D004602 3.1e-11 73.6 262 27.1
CAN.G22.51 Capsicum annuum HOM05D000121 ORTHO05D000102 1.2e-10 71.6 115 35.7
Sabra16G0276700 Salix brachista HOM05D006433 ORTHO05D005382 3.5e-10 70.1 108 41.7
Oeu052334.1 Olea europaea HOM05D003841 ORTHO05D004602 1.3e-09 68.2 233 27.9
Oeu052339.1 Olea europaea HOM05D003841 ORTHO05D004602 6.5e-09 65.9 174 31.6
Mapoly0042s0124 Marchantia polymorpha HOM05D002766 ORTHO05D002809 9.4e-08 62.0 364 25.0
Phvul.005G089400 Phaseolus vulgaris HOM05D003841 ORTHO05D004602 2.1e-07 60.8 79 45.6
Ah.04g165190 Amaranthus hybridus HOM05D003841 ORTHO05D004602 2.7e-07 60.5 209 33.5
Cpa.g.c47761 Carica papaya HOM05D003841 ORTHO05D004602 6.1e-07 59.3 130 37.7
Os03g0201000 Oryza sativa ssp. japonica HOM05D003841 ORTHO05D049799 3.0e-06 57.0 329 26.4
HPP92_022467 Vanilla planifolia HOM05D002766 ORTHO05D002809 3.0e-06 57.0 261 27.6
Hund11508 Selenicereus undatus HOM05D003841 ORTHO05D004602 5.2e-06 56.2 87 42.5
Hund11841 Selenicereus undatus HOM05D002766 ORTHO05D002809 6.8e-06 55.8 252 24.6
Oeu052338.1 Olea europaea HOM05D003841 ORTHO05D004602 8.8e-06 55.5 213 28.2
Pp3c9_19620 Physcomitrium patens HOM05D002766 ORTHO05D002809 8.8e-06 55.5 353 24.6
VMungo1027G0001 Vigna mungo HOM05D003841 ORTHO05D004602 8.8e-06 55.5 196 28.6


User provided reference genes

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