Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0013069 Sechium edule HOM05D006255 ORTHO05D008014 3.5e-100 368.6 231 100.0
Sed0016506 Sechium edule HOM05D006255 ORTHO05D008014 4.1e-93 345.1 231 81.4
CsaV3_7G001410 Cucumis sativus L. HOM05D006255 ORTHO05D008014 5.2e-88 328.2 231 86.1
ClCG02G003730 Citrullus lanatus HOM05D006255 ORTHO05D008014 1.3e-86 323.6 226 88.5
MELO3C013309.2 Cucumis melo HOM05D006255 ORTHO05D008014 4.2e-82 308.5 231 82.7
Duzib248G1128 Durio zibethinus HOM05D006255 ORTHO05D008014 9.8e-79 297.4 228 78.5
PGR142G2886 Punica granatum HOM05D006255 ORTHO05D008014 1.3e-78 297.0 228 80.3
Eucgr.I01476 Eucalyptus grandis HOM05D006255 ORTHO05D008014 8.3e-78 294.3 227 77.5
Actinidia20544 Actinidia chinensis HOM05D006255 ORTHO05D008014 1.4e-77 293.5 231 77.1
arahy.Tifrunner.gnm1.ann1.K7U5ID Arachis hypogaea HOM05D006255 ORTHO05D008014 2.0e-76 289.7 229 76.4
TAR625G0439 Trochodendron aralioides HOM05D006255 ORTHO05D008014 4.5e-76 288.5 228 70.6
arahy.Tifrunner.gnm1.ann1.5E63QU Arachis hypogaea HOM05D006255 ORTHO05D008014 5.9e-76 288.1 229 76.0
Ciclev10029213m.g Citrus clementina HOM05D006255 ORTHO05D008014 2.9e-75 285.8 227 72.2
Nn5g30887 Nelumbo nucifera HOM05D006255 ORTHO05D008014 3.8e-75 285.4 227 72.2
Atru.chr5.3479 Acer truncatum HOM05D006255 ORTHO05D008014 6.6e-75 284.6 228 76.3
Cc09_g10450 Coffea canephora HOM05D006255 ORTHO05D008014 1.1e-74 283.9 224 80.8
MSTRG.19958 Avicennia marina HOM05D006255 ORTHO05D008014 7.3e-74 281.2 228 77.6
Manes.11G100600 Manihot esculenta HOM05D006255 ORTHO05D008014 9.5e-74 280.8 227 69.6
THA.LOC104804084 Tarenaya hassleriana HOM05D006255 ORTHO05D008014 1.2e-73 280.4 228 74.1
vmacro02304 Vaccinium macrocarpon HOM05D006255 ORTHO05D008014 1.2e-73 280.4 227 70.9
Hma1.2p1_0163F.1_g072870 Hydrangea macrophylla HOM05D006255 ORTHO05D008014 1.6e-73 280.0 228 80.3
Actinidia18024 Actinidia chinensis HOM05D006255 ORTHO05D008014 2.1e-73 279.6 231 77.9
Lj9A402T69 Lonicera japonica HOM05D006255 ORTHO05D008014 2.1e-73 279.6 227 70.5
Cpa.g.sc20.136 Carica papaya HOM05D006255 ORTHO05D008014 3.0e-72 275.8 227 79.3
Thecc.02G052300 Theobroma cacao HOM05D006255 ORTHO05D008014 4.0e-72 275.4 228 76.3
MSTRG.16938 Avicennia marina HOM05D006255 ORTHO05D008014 5.2e-72 275.0 228 77.6
CSS0039919 Camellia sinensis var. sinensis HOM05D006255 ORTHO05D008014 5.2e-72 275.0 227 69.2
TWI31G0945 Tripterygium wilfordii HOM05D006255 ORTHO05D008014 8.9e-72 274.2 228 69.7
COL.COLO4_18000 Corchorus olitorius HOM05D006255 ORTHO05D008014 2.0e-71 273.1 230 76.5
Gohir.D01G162900 Gossypium hirsutum HOM05D006255 ORTHO05D008014 2.0e-71 273.1 228 73.7
Gorai.002G202100 Gossypium raimondii HOM05D006255 ORTHO05D008014 2.0e-71 273.1 228 73.7
ECA233G3172 Erigeron canadensis HOM05D006255 ORTHO05D008014 4.1e-69 265.4 230 74.8
Nitab4.5_0003603g0130 Nicotiana tabacum HOM05D006255 ORTHO05D008014 1.2e-68 263.8 225 75.6
Solyc01g111940.4 Solanum lycopersicum HOM05D006255 ORTHO05D008014 1.2e-68 263.8 228 71.1
Aa31LG7G15760 Aethionema arabicum HOM05D007460 ORTHO05D009396 2.0e-68 263.1 245 71.4
Sopen01g053990 Solanum pennellii HOM05D006255 ORTHO05D008014 2.7e-68 262.7 228 70.6
Dinv14143 Davidia involucrata HOM05D006255 ORTHO05D008014 4.6e-68 261.9 228 76.3
MBI05_g35101_MAGBIO Magnolia biondii HOM05D006255 ORTHO05D008014 4.6e-68 261.9 228 64.9
Gohir.A12G035500 Gossypium hirsutum HOM05D006255 ORTHO05D008014 1.0e-67 260.8 228 65.4
Gohir.D12G037200 Gossypium hirsutum HOM05D006255 ORTHO05D008014 1.0e-67 260.8 228 73.2
Aa31LG9G40 Aethionema arabicum HOM05D006255 ORTHO05D008014 1.3e-67 260.4 245 71.0
TPR.G38579 Trifolium pratense HOM05D006255 ORTHO05D008014 3.0e-67 259.2 229 74.7
HanXRQChr16g0527781 Helianthus annuus HOM05D006255 ORTHO05D008014 3.9e-67 258.8 231 73.2
Gorai.008G038300 Gossypium raimondii HOM05D006255 ORTHO05D008014 5.0e-67 258.5 228 73.7
Potri.009G140200 Populus trichocarpa HOM05D006255 ORTHO05D008014 5.0e-67 258.5 228 70.2
Carub.0001s1596 Capsella rubella HOM05D006255 ORTHO05D008014 1.5e-66 256.9 229 69.9
Prupe.8G172600 Prunus persica HOM05D006255 ORTHO05D008014 1.5e-66 256.9 228 67.1
PGSC0003DMG401018633 Solanum tuberosum HOM05D006255 ORTHO05D008014 1.9e-66 256.5 224 69.6
unitig_0.g812 Utricularia gibba HOM05D006255 ORTHO05D008014 2.5e-66 256.1 224 74.1
Lsat_1_v5_gn_8_122201 Lactuca sativa HOM05D006255 ORTHO05D008014 7.3e-66 254.6 227 74.4
CANSAT25G2216 Cannabis sativa HOM05D006255 ORTHO05D008014 9.5e-66 254.2 228 75.4
Oeu029013.1 Olea europaea HOM05D006255 ORTHO05D008014 6.2e-65 251.5 226 69.5
Cfa005320 Carpinus fangiana HOM05D006255 ORTHO05D010524 1.1e-64 250.8 222 75.2
MD10G1131800 Malus domestica HOM05D006255 ORTHO05D008014 1.1e-64 250.8 228 74.6
Aqoxy5G01073 Aquilegia oxysepala HOM05D006255 ORTHO05D008014 1.4e-64 250.4 229 65.5
Nitab4.5_0001506g0010 Nicotiana tabacum HOM05D006255 ORTHO05D008014 2.3e-64 249.6 226 71.7
ATR0661G177 Amborella trichopoda HOM05D006255 ORTHO05D008014 4.0e-64 248.8 226 66.4
Glyma.06G001200 Glycine max HOM05D006255 ORTHO05D008014 4.0e-64 248.8 228 73.2
EL10Ac9g21307 Beta vulgaris HOM05D006255 ORTHO05D008014 8.9e-64 247.7 228 71.1
Medtr3g118350 Medicago truncatula HOM05D006255 ORTHO05D008014 8.9e-64 247.7 227 66.1
Nitab4.5_0001215g0050 Nicotiana tabacum HOM05D006255 ORTHO05D008014 2.0e-63 246.5 228 73.2
AL1G28330 Arabidopsis lyrata HOM05D006255 ORTHO05D008014 2.6e-63 246.1 229 68.1
Psat5g000920 Pisum sativum HOM05D006255 ORTHO05D008014 2.6e-63 246.1 228 73.2
SGA_v2.0_scaffold32G13327 Striga asiatica HOM05D006255 ORTHO05D008014 2.6e-63 246.1 228 71.5
Nitab4.5_0001629g0040 Nicotiana tabacum HOM05D006255 ORTHO05D008014 1.7e-62 243.4 228 71.1
Peaxi162Scf00362g00349 Petunia axillaris HOM05D006255 ORTHO05D008014 2.2e-62 243.0 227 71.8
CiPaw.05G087400 Carya illinoinensis HOM05D006255 ORTHO05D008014 1.9e-61 240.0 228 72.4
Ah.01g007960 Amaranthus hybridus HOM05D006255 ORTHO05D008014 5.4e-61 238.4 229 70.7
Os04g0561600 Oryza sativa ssp. japonica HOM05D006255 ORTHO05D008014 5.4e-61 238.4 233 62.2
Phvul.009G117000 Phaseolus vulgaris HOM05D006255 ORTHO05D008014 9.2e-61 237.7 228 62.3
Sabra09G0108900 Salix brachista HOM05D006255 ORTHO05D008014 2.1e-60 236.5 258 65.1
Lj4g0004587 Lotus japonicus HOM05D006255 ORTHO05D008014 2.7e-60 236.1 229 71.2
QL11p053294 Quercus lobata HOM05D006255 ORTHO05D008014 3.5e-60 235.7 228 73.2
PSO675G3819 Papaver somniferum HOM05D006255 ORTHO05D008014 7.8e-60 234.6 228 69.7
Glyma.04G001700 Glycine max HOM05D006255 ORTHO05D008014 1.7e-59 233.4 228 71.1
BcaB03g14828 Brassica carinata HOM05D006255 ORTHO05D008014 6.6e-59 231.5 229 68.6
FAN15G2553 Fragaria x ananassa HOM05D006255 ORTHO05D008014 1.1e-58 230.7 230 70.4
HPP92_022389 Vanilla planifolia HOM05D006255 ORTHO05D008014 1.5e-58 230.3 223 59.6
Lalb_Chr08g0246771 Lupinus albus HOM05D006255 ORTHO05D008014 3.3e-58 229.2 232 70.7
CARHR016680 Cardamine hirsuta HOM05D006255 ORTHO05D008014 5.6e-58 228.4 229 66.4
Ca_15278_v3 Cicer arietinum L. HOM05D006255 ORTHO05D008014 7.3e-58 228.0 231 68.8
Nn6g31846 Nelumbo nucifera HOM05D006255 ORTHO05D008014 9.5e-58 227.6 228 60.5
MD05G1128500 Malus domestica HOM05D006255 ORTHO05D008014 2.1e-57 226.5 228 70.2
SalBow1G8078 Salvia bowleyana HOM05D006255 ORTHO05D010524 4.7e-57 225.3 228 65.8
AT1G16210 Arabidopsis thaliana HOM05D006255 ORTHO05D008014 4.0e-56 222.2 229 63.3
HPP92_025891 Vanilla planifolia HOM05D006255 ORTHO05D008014 1.2e-55 220.7 232 57.3
RcHm_v2.0_Chr6g0279491 Rosa chinensis HOM05D006255 ORTHO05D008014 2.0e-55 219.9 230 70.4
PSO541G1652 Papaver somniferum HOM05D006255 ORTHO05D008014 2.6e-55 219.5 228 66.7
SMO119G0083 Selaginella moellendorffii HOM05D006255 ORTHO05D008014 5.8e-55 218.4 230 53.5
Sc08g0002620 Simmondsia chinensis HOM05D006255 ORTHO05D008014 5.8e-55 218.4 228 61.4
FvH4_2g15950 Fragaria vesca HOM05D006255 ORTHO05D008014 3.7e-54 215.7 230 68.3
CBR_g61263 Chara braunii HOM05D006255 ORTHO05D008014 8.3e-54 214.5 230 53.5
FAN27G1328 Fragaria x ananassa HOM05D006255 ORTHO05D008014 1.4e-53 213.8 226 68.6
Zm00001eb074070 Zea mays HOM05D006255 ORTHO05D008014 4.1e-53 212.2 235 61.3
Gohir.A01G171900 Gossypium hirsutum HOM05D006255 ORTHO05D008014 9.2e-53 211.1 153 73.2
FAN24G2083 Fragaria x ananassa HOM05D006255 ORTHO05D008014 1.2e-52 210.7 226 67.7
Pp3c7_26990 Physcomitrium patens HOM05D006255 ORTHO05D008014 1.6e-52 210.3 228 60.1
Haze_02065 Corylus avellana HOM05D006255 ORTHO05D008014 6.0e-52 208.4 331 51.1
CDE02G2216 Ceratophyllum demersum HOM05D006255 ORTHO05D008014 6.6e-51 204.9 228 53.9
Pp3c11_730 Physcomitrium patens HOM05D006255 ORTHO05D008014 6.6e-51 204.9 228 61.4
Pp3c11_731 Physcomitrium patens HOM05D006255 ORTHO05D008014 1.1e-50 204.1 228 61.4
C06p44610 Brassica napus HOM05D002002 ORTHO05D008711 1.2e-49 200.7 226 63.7
BolC6t39525H Brassica oleracea HOM05D006255 ORTHO05D008014 1.2e-49 200.7 226 63.7
Duzib132G0230 Durio zibethinus HOM05D006255 ORTHO05D008014 8.1e-49 198.0 228 65.4
BraA07t31267Z Brassica rapa HOM05D006255 ORTHO05D008014 4.0e-48 195.7 226 63.3
BcaB03g14827 Brassica carinata HOM05D002002 ORTHO05D008711 5.2e-48 195.3 226 62.8
A07p37050 Brassica napus HOM05D002002 ORTHO05D008711 8.9e-48 194.5 226 62.8
Os03g0131800 Oryza sativa ssp. japonica HOM05D006255 ORTHO05D008014 8.9e-48 194.5 230 55.2
AagrBONN_evm.TU.Sc2ySwM_368.1212 Anthoceros agrestis HOM05D006255 ORTHO05D008014 1.2e-47 194.1 230 52.2
Mapoly0058s0055 Marchantia polymorpha HOM05D006255 ORTHO05D008014 2.0e-47 193.4 226 52.7
VMungo1309G1654 Vigna mungo HOM05D006255 ORTHO05D008014 4.9e-46 188.7 228 59.6
AUR62009986 Chenopodium quinoa HOM05D006255 ORTHO05D008014 3.0e-43 179.5 226 51.8
Sp4g00050 Schrenkiella parvula HOM05D006255 ORTHO05D008014 3.9e-43 179.1 227 52.0
Lj5C174T15 Lonicera japonica HOM05D006255 ORTHO05D008014 5.1e-43 178.7 226 62.4
Ah.01g023450 Amaranthus hybridus HOM05D000939 ORTHO05D000745 8.7e-43 177.9 211 63.5
CAN.G1235.32 Capsicum annuum HOM05D006255 ORTHO05D008014 4.7e-41 172.2 188 63.3
CDE09G0466 Ceratophyllum demersum HOM05D006255 ORTHO05D008014 2.9e-38 162.9 97 77.3
AUR62012975 Chenopodium quinoa HOM05D006255 ORTHO05D008014 2.4e-29 133.3 226 43.8
C06p36040 Brassica napus HOM05D006255 ORTHO05D008014 2.1e-28 130.2 76 82.9
GSVIVG01023898001 Vitis vinifera HOM05D006255 ORTHO05D008014 4.6e-28 129.0 64 92.2
Gohir.A03G206650 Gossypium hirsutum HOM05D006255 ORTHO05D008014 3.9e-27 125.9 226 42.0
Peaxi162Scf00875g00037 Petunia axillaris HOM05D006255 ORTHO05D008014 9.6e-26 121.3 95 65.3
BolC6t38725H Brassica oleracea HOM05D006255 ORTHO05D008014 2.8e-25 119.8 68 83.8
Gorai.005G255900 Gossypium raimondii HOM05D006255 ORTHO05D008014 3.7e-25 119.4 226 40.3
Cre14.g629500 Chlamydomonas reinhardtii HOM05D006255 ORTHO05D008014 8.1e-25 118.2 225 37.3
PRCOL_00005063 Prasinoderma coloniale HOM05D006255 ORTHO05D008014 3.2e-21 106.3 226 36.7
Migut.H01073 Erythranthe guttata HOM05D006255 ORTHO05D008014 1.1e-18 97.8 230 37.0
MCO11G585 Micromonas commoda HOM05D006255 ORTHO05D008014 2.5e-13 80.1 164 37.2
BcaC08g45811 Brassica carinata HOM05D006255 ORTHO05D008014 6.7e-11 72.0 40 82.5
Cfa024524 Carpinus fangiana HOM05D006255 ORTHO05D008014 3.4e-07 59.7 78 43.6
PSO541G1702 Papaver somniferum HOM05D006255 ORTHO05D008014 1.3e-06 57.8 169 36.1


User provided reference genes

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