Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0012539 Sechium edule HOM05D007440 ORTHO05D009418 4.2e-245 850.9 419 100.0
MELO3C008079.2 Cucumis melo HOM05D007440 ORTHO05D009418 3.4e-207 724.9 398 86.4
CsaV3_2G033090 Cucumis sativus L. HOM05D007440 ORTHO05D009418 6.5e-206 720.7 399 85.7
ClCG11G008830 Citrullus lanatus HOM05D007440 ORTHO05D009418 8.5e-206 720.3 398 85.7
CiPaw.03G017000 Carya illinoinensis HOM05D007440 ORTHO05D009418 1.7e-177 626.3 395 74.7
QL09p004054 Quercus lobata HOM05D007440 ORTHO05D009418 8.6e-174 614.0 394 73.4
Cfa008111 Carpinus fangiana HOM05D007440 ORTHO05D009418 1.5e-173 613.2 399 72.4
GSVIVG01036437001 Vitis vinifera HOM05D007440 ORTHO05D009418 1.5e-173 613.2 400 72.8
Dinv41796 Davidia involucrata HOM05D007440 ORTHO05D009418 6.1e-172 607.8 395 74.4
Manes.18G121350 Manihot esculenta HOM05D007440 ORTHO05D009418 4.4e-170 601.7 395 73.7
Thecc.08G172800 Theobroma cacao HOM05D007440 ORTHO05D009418 1.7e-169 599.7 401 71.6
TAR381G0685 Trochodendron aralioides HOM05D007440 ORTHO05D009418 2.2e-169 599.4 402 70.9
Atru.chr12.1704 Acer truncatum HOM05D007440 ORTHO05D009418 3.5e-167 592.0 388 72.7
Hma1.2p1_0708F.1_g207100 Hydrangea macrophylla HOM05D007440 ORTHO05D009418 1.0e-166 590.5 390 72.3
Nn1g02997 Nelumbo nucifera HOM05D007440 ORTHO05D009418 1.7e-166 589.7 391 71.1
FAN18G0056 Fragaria x ananassa HOM05D007440 ORTHO05D009418 2.3e-166 589.3 390 70.5
Potri.019G076200 Populus trichocarpa HOM05D007440 ORTHO05D009418 3.9e-166 588.6 394 73.1
RcHm_v2.0_Chr7g0224381 Rosa chinensis HOM05D007440 ORTHO05D009418 6.6e-166 587.8 395 70.6
TWI23G1187 Tripterygium wilfordii HOM05D007440 ORTHO05D009418 7.3e-165 584.3 390 73.1
Cpa.g.sc21.56 Carica papaya HOM05D007440 ORTHO05D009418 2.1e-164 582.8 394 71.6
Lj9C701T14 Lonicera japonica HOM05D007440 ORTHO05D009418 6.2e-164 581.3 381 73.5
MD15G1399400 Malus domestica HOM05D007440 ORTHO05D009418 5.2e-163 578.2 400 68.2
Haze_13927 Corylus avellana HOM05D007440 ORTHO05D009418 2.0e-162 576.2 395 70.4
CANSAT25G0816 Cannabis sativa HOM05D007440 ORTHO05D009418 2.6e-162 575.9 399 69.4
CSS0017361 Camellia sinensis var. sinensis HOM05D007440 ORTHO05D009418 9.8e-162 573.9 393 69.7
PGR031G3126 Punica granatum HOM05D007440 ORTHO05D009418 1.7e-161 573.2 395 70.4
Actinidia29398 Actinidia chinensis HOM05D007440 ORTHO05D009418 6.4e-161 571.2 390 69.5
Gorai.009G265700 Gossypium raimondii HOM05D007440 ORTHO05D009418 1.1e-160 570.5 387 71.3
Gohir.D05G254100 Gossypium hirsutum HOM05D007440 ORTHO05D009418 1.9e-160 569.7 387 71.1
Sabra19G0086600 Salix brachista HOM05D007440 ORTHO05D009418 7.0e-160 567.8 406 70.4
Gohir.A05G252301 Gossypium hirsutum HOM05D007440 ORTHO05D009418 1.3e-158 563.5 387 69.8
Cc03_g16220 Coffea canephora HOM05D007440 ORTHO05D009418 1.7e-158 563.1 398 69.3
Oeu061891.1 Olea europaea HOM05D007440 ORTHO05D009418 3.0e-158 562.4 402 67.7
Lj3g0019924 Lotus japonicus HOM05D007440 ORTHO05D009418 4.7e-156 555.1 395 69.4
arahy.Tifrunner.gnm1.ann1.E07HZ8 Arachis hypogaea HOM05D007440 ORTHO05D009418 8.1e-156 554.3 390 69.2
arahy.Tifrunner.gnm1.ann1.YQ4984 Arachis hypogaea HOM05D007440 ORTHO05D009418 1.1e-155 553.9 390 69.2
Ciclev10024582m.g Citrus clementina HOM05D007440 ORTHO05D009418 1.1e-155 553.9 390 70.8
Solyc12g017690.3 Solanum lycopersicum HOM05D007440 ORTHO05D009418 1.4e-155 553.5 399 68.2
Aqoxy6G00075 Aquilegia oxysepala HOM05D007440 ORTHO05D009418 6.8e-155 551.2 415 66.0
Glyma.13G000800 Glycine max HOM05D007440 ORTHO05D009418 2.0e-154 549.7 391 68.5
Sopen12g008470 Solanum pennellii HOM05D007440 ORTHO05D009418 4.4e-154 548.5 399 66.9
Lsat_1_v5_gn_1_25281 Lactuca sativa HOM05D007440 ORTHO05D009418 7.5e-154 547.7 403 67.0
PSO170G3813 Papaver somniferum HOM05D007440 ORTHO05D009418 9.8e-154 547.4 398 66.3
Phvul.011G216600 Phaseolus vulgaris HOM05D007440 ORTHO05D009418 2.2e-153 546.2 389 68.9
Rhsim02G0174300 Rhododendron simsii HOM05D007440 ORTHO05D009418 4.9e-153 545.0 401 67.1
HanXRQChr02g0037061 Helianthus annuus HOM05D007440 ORTHO05D009418 2.4e-152 542.7 403 67.2
Migut.N03008 Erythranthe guttata HOM05D007440 ORTHO05D009418 4.1e-152 542.0 399 65.4
Hund26630 Selenicereus undatus HOM05D007440 ORTHO05D009418 1.7e-150 536.6 396 66.4
Psat7g227720 Pisum sativum HOM05D007440 ORTHO05D009418 2.3e-150 536.2 389 67.4
Medtr4g031180 Medicago truncatula HOM05D007440 ORTHO05D009418 1.5e-149 533.5 392 66.8
TPR.G34135 Trifolium pratense HOM05D007440 ORTHO05D009418 3.3e-149 532.3 380 68.2
Prupe.1G546900 Prunus persica HOM05D007440 ORTHO05D009418 4.3e-149 531.9 354 72.3
FvH4_5g32910 Fragaria vesca HOM05D007440 ORTHO05D009418 5.6e-149 531.6 359 69.6
CDE05G2917 Ceratophyllum demersum HOM05D007440 ORTHO05D009418 6.2e-148 528.1 392 66.1
SalBow6G1672 Salvia bowleyana HOM05D007440 ORTHO05D009418 2.3e-147 526.2 402 64.2
FAN04G2515 Fragaria x ananassa HOM05D007440 ORTHO05D009418 5.4e-144 515.0 395 64.3
ATR1089G110 Amborella trichopoda HOM05D007440 ORTHO05D009418 6.0e-143 511.5 392 64.8
HPP92_004660 Vanilla planifolia HOM05D007440 ORTHO05D009418 2.0e-138 496.5 392 62.5
Aa31LG4G9050 Aethionema arabicum HOM05D007440 ORTHO05D009418 5.8e-138 495.0 386 61.7
THA.LOC104810378 Tarenaya hassleriana HOM05D007440 ORTHO05D009418 2.9e-137 492.7 385 62.3
SGA_v2.0_scaffold19G08914 Striga asiatica HOM05D007440 ORTHO05D009418 9.3e-136 487.6 491 53.4
RcHm_v2.0_Chr7g0230881 Rosa chinensis HOM05D007440 ORTHO05D009418 2.7e-135 486.1 328 68.9
Lalb_Chr17g0336871 Lupinus albus HOM05D007440 ORTHO05D009418 1.9e-133 479.9 396 62.6
Os10g0141900 Oryza sativa ssp. japonica HOM05D007440 ORTHO05D009418 1.8e-131 473.4 393 58.8
Ca_12759_v3 Cicer arietinum L. HOM05D007440 ORTHO05D009418 2.6e-130 469.5 393 60.3
ECA247G2087 Erigeron canadensis HOM05D007440 ORTHO05D009418 2.2e-129 466.5 323 67.5
Eucgr.H00023 Eucalyptus grandis HOM05D007440 ORTHO05D009418 6.7e-126 454.9 310 68.4
MBI03_g14514_MAGBIO Magnolia biondii HOM05D007440 ORTHO05D009418 5.5e-120 435.3 341 63.9
FAN08G1847 Fragaria x ananassa HOM05D007440 ORTHO05D009418 4.3e-117 425.6 362 57.5
DCAR_002184 Daucus carota HOM05D007440 ORTHO05D004363 1.0e-110 404.4 330 59.4
Mapoly0046s0064 Marchantia polymorpha HOM05D007440 ORTHO05D009418 4.2e-104 382.5 409 49.6
Pp3c17_10270 Physcomitrium patens HOM05D007440 ORTHO05D009418 1.2e-103 380.9 404 48.8
SMO347G0497 Selaginella moellendorffii HOM05D007440 ORTHO05D009418 2.5e-101 373.2 375 49.3
Duzib177G0102 Durio zibethinus HOM05D007440 ORTHO05D009418 3.3e-101 372.9 233 74.7
Zm00001eb026400 Zea mays HOM05D007440 ORTHO05D009418 2.8e-100 369.8 306 58.2
Nitab4.5_0006566g0010 Nicotiana tabacum HOM05D007440 ORTHO05D009418 2.0e-98 363.6 331 56.5
PSO782G5381 Papaver somniferum HOM05D007440 ORTHO05D009418 1.8e-94 350.5 250 67.2
Pp3c9_24070 Physcomitrium patens HOM05D007440 ORTHO05D009418 2.6e-90 336.7 399 45.1
CBR_g29696 Chara braunii HOM05D007440 ORTHO05D009418 5.9e-82 308.9 498 37.3
Nitab4.5_0000219g0060 Nicotiana tabacum HOM05D007440 ORTHO05D009418 1.5e-80 304.3 218 68.3
Lsat_1_v5_gn_7_9441 Lactuca sativa HOM05D007440 ORTHO05D009418 4.2e-80 302.8 278 55.4
Peaxi162Scf00017g00002 Petunia axillaris HOM05D007440 ORTHO05D009418 9.1e-75 285.0 266 54.1
COL.COLO4_24615 Corchorus olitorius HOM05D007440 ORTHO05D009418 1.1e-72 278.1 182 73.1
AagrBONN_evm.TU.Sc2ySwM_362.1381 Anthoceros agrestis HOM05D007440 ORTHO05D009418 6.8e-70 268.9 280 46.4
CSS0010463 Camellia sinensis var. sinensis HOM05D007440 ORTHO05D009418 1.4e-67 261.2 181 69.1
PGSC0003DMG401002240 Solanum tuberosum HOM05D007440 ORTHO05D009418 2.0e-66 257.3 178 69.7
vmacro11039 Vaccinium macrocarpon HOM05D007440 ORTHO05D009418 8.6e-65 251.9 222 59.0
Nitab4.5_0000219g0040 Nicotiana tabacum HOM05D007440 ORTHO05D009418 2.5e-64 250.4 180 67.2
PGSC0003DMG402002240 Solanum tuberosum HOM05D007440 ORTHO05D009418 6.8e-62 242.3 170 70.0
Atru.chr13.2417 Acer truncatum HOM05D007440 ORTHO05D009418 3.7e-60 236.5 161 71.4
vmacro11038 Vaccinium macrocarpon HOM05D007440 ORTHO05D009418 3.8e-57 226.5 210 56.2
PRCOL_00006364 Prasinoderma coloniale HOM05D007440 ORTHO05D009418 8.6e-57 225.3 382 34.6
Cre10.g451000 Chlamydomonas reinhardtii HOM05D007440 ORTHO05D009418 5.6e-56 222.6 460 34.1
CAN.G8.41 Capsicum annuum HOM05D007440 ORTHO05D009418 3.5e-50 203.4 210 49.5
MCO13G519 Micromonas commoda HOM05D007440 ORTHO05D009418 7.8e-50 202.2 413 32.2
CSS0018984 Camellia sinensis var. sinensis HOM05D007440 ORTHO05D009418 8.6e-49 198.7 140 67.1
CAN.G8.40 Capsicum annuum HOM05D007440 ORTHO05D009418 1.3e-33 148.3 111 61.3
Thecc.09G136000 Theobroma cacao HOM05D007440 ORTHO05D009418 2.5e-32 144.1 96 74.0
MD08G1188600 Malus domestica HOM05D006997 ORTHO05D008713 9.9e-29 132.1 395 27.6
PSO170G4713 Papaver somniferum HOM05D006997 ORTHO05D008713 1.1e-27 128.6 395 28.1
Prupe.1G523100 Prunus persica HOM05D006997 ORTHO05D008713 1.1e-27 128.6 396 27.5
HPP92_005985 Vanilla planifolia HOM05D006997 ORTHO05D008713 3.2e-27 127.1 397 27.7
PSO700G0253 Papaver somniferum HOM05D006997 ORTHO05D008713 4.2e-27 126.7 377 27.9
Actinidia30795 Actinidia chinensis HOM05D006997 ORTHO05D008713 7.1e-27 125.9 384 27.3
arahy.Tifrunner.gnm1.ann1.2V06JV Arachis hypogaea HOM05D006997 ORTHO05D008713 9.2e-27 125.6 385 27.5
FvH4_5g36560 Fragaria vesca HOM05D006997 ORTHO05D008713 9.2e-27 125.6 396 27.5
Potri.002G100700 Populus trichocarpa HOM05D006997 ORTHO05D008713 9.2e-27 125.6 328 28.7
CANSAT54G2489 Cannabis sativa HOM05D006997 ORTHO05D008713 1.2e-26 125.2 329 28.6
Gohir.A01G132700 Gossypium hirsutum HOM05D006997 ORTHO05D008713 1.2e-26 125.2 328 28.4
VMungo1309G1562 Vigna mungo HOM05D006997 ORTHO05D008713 1.2e-26 125.2 383 27.7
CsaV3_3G047700 Cucumis sativus L. HOM05D006997 ORTHO05D008713 1.6e-26 124.8 337 28.2
MELO3C003553.2 Cucumis melo HOM05D006997 ORTHO05D008713 2.1e-26 124.4 327 28.7
MBI02_g10710_MAGBIO Magnolia biondii HOM05D006997 ORTHO05D008713 2.1e-26 124.4 386 27.2
Pp3c2_7910 Physcomitrium patens HOM05D006997 ORTHO05D008713 2.1e-26 124.4 395 26.3
FAN13G2131 Fragaria x ananassa HOM05D006997 ORTHO05D008713 2.7e-26 124.0 307 30.0
TAR381G0945 Trochodendron aralioides HOM05D006997 ORTHO05D008713 2.7e-26 124.0 395 27.6
arahy.Tifrunner.gnm1.ann1.50RG73 Arachis hypogaea HOM05D006997 ORTHO05D008713 3.5e-26 123.6 385 27.3
Actinidia10345 Actinidia chinensis HOM05D006997 ORTHO05D008713 4.6e-26 123.2 329 28.0
Gorai.002G141200 Gossypium raimondii HOM05D006997 ORTHO05D008713 4.6e-26 123.2 395 27.1
Lalb_Chr08g0242211 Lupinus albus HOM05D006997 ORTHO05D008713 4.6e-26 123.2 394 26.9
PGR042G3947 Punica granatum HOM05D006997 ORTHO05D008713 4.6e-26 123.2 395 26.8
Thecc.08G101800 Theobroma cacao HOM05D006997 ORTHO05D008713 4.6e-26 123.2 328 28.7
Duzib116G0677 Durio zibethinus HOM05D006997 ORTHO05D008713 6.0e-26 122.9 395 27.1
Migut.O00787 Erythranthe guttata HOM05D006997 ORTHO05D008713 6.0e-26 122.9 384 26.8
Glyma.04G099000 Glycine max HOM05D006997 ORTHO05D008713 6.0e-26 122.9 383 27.2
Manes.02G149000 Manihot esculenta HOM05D006997 ORTHO05D008713 6.0e-26 122.9 328 28.0
PSO447G0258 Papaver somniferum HOM05D006997 ORTHO05D008713 6.0e-26 122.9 397 28.2
Ciclev10001423m.g Citrus clementina HOM05D006997 ORTHO05D008713 7.8e-26 122.5 395 27.1
Mapoly0028s0040 Marchantia polymorpha HOM05D006997 ORTHO05D008713 7.8e-26 122.5 394 26.9
TWI56G0051 Tripterygium wilfordii HOM05D006997 ORTHO05D008713 1.0e-25 122.1 396 27.0
Atru.chr13.1117 Acer truncatum HOM05D006997 ORTHO05D008713 1.3e-25 121.7 328 28.7
Cc10_g06680 Coffea canephora HOM05D006997 ORTHO05D008713 1.3e-25 121.7 329 28.0
Duzib093G0368 Durio zibethinus HOM05D006997 ORTHO05D008713 1.3e-25 121.7 328 27.4
FAN18G0565 Fragaria x ananassa HOM05D006997 ORTHO05D008713 1.3e-25 121.7 407 27.5
Lj1g0014637 Lotus japonicus HOM05D006997 ORTHO05D008713 1.7e-25 121.3 384 26.6
TPR.G18644 Trifolium pratense HOM05D006997 ORTHO05D008713 1.7e-25 121.3 383 26.9
RcHm_v2.0_Chr3g0492071 Rosa chinensis HOM05D006997 ORTHO05D008713 2.3e-25 120.9 263 30.4
Haze_18264 Corylus avellana HOM05D006997 ORTHO05D008713 3.9e-25 120.2 322 28.6
Glyma.06G100700 Glycine max HOM05D006997 ORTHO05D008713 3.9e-25 120.2 383 26.6
FAN08G2563 Fragaria x ananassa HOM05D006997 ORTHO05D008713 5.1e-25 119.8 322 28.6
Eucgr.F00379 Eucalyptus grandis HOM05D006997 ORTHO05D008713 6.6e-25 119.4 328 27.7
Nn5g29994 Nelumbo nucifera HOM05D006997 ORTHO05D008713 6.6e-25 119.4 262 30.2
Cpa.g.sc36.182 Carica papaya HOM05D006997 ORTHO05D008713 1.1e-24 118.6 262 29.8
QL02p002364 Quercus lobata HOM05D006997 ORTHO05D008713 1.1e-24 118.6 327 27.8
CiPaw.15G045900 Carya illinoinensis HOM05D006997 ORTHO05D008713 1.5e-24 118.2 327 28.1
Hma1.2p1_1613F.1_g293656 Hydrangea macrophylla HOM05D006997 ORTHO05D008713 1.5e-24 118.2 322 28.0
Nitab4.5_0005108g0030 Nicotiana tabacum HOM05D006997 ORTHO05D008713 1.5e-24 118.2 333 27.9
ATR0684G208 Amborella trichopoda HOM05D006997 ORTHO05D008713 1.9e-24 117.9 330 28.2
CSS0033006 Camellia sinensis var. sinensis HOM05D006997 ORTHO05D008713 3.3e-24 117.1 328 27.7
Cre12.g558400 Chlamydomonas reinhardtii HOM05D006997 ORTHO05D008713 4.3e-24 116.7 393 25.2
THA.LOC104806793 Tarenaya hassleriana HOM05D006997 ORTHO05D008713 7.3e-24 115.9 261 29.9
SMO203G0247 Selaginella moellendorffii HOM05D006997 ORTHO05D008713 1.2e-23 115.2 327 27.5
Hund26989 Selenicereus undatus HOM05D006997 ORTHO05D008713 1.2e-23 115.2 261 29.5
Medtr5g099370 Medicago truncatula HOM05D006997 ORTHO05D008713 2.1e-23 114.4 383 26.4
GSVIVG01009084001 Vitis vinifera HOM05D006997 ORTHO05D008713 2.1e-23 114.4 328 27.1
SalBow1G8133 Salvia bowleyana HOM05D006997 ORTHO05D008713 2.8e-23 114.0 378 25.9
CSS0036565 Camellia sinensis var. sinensis HOM05D006997 ORTHO05D008713 4.7e-23 113.2 262 29.4
COL.COLO4_12006 Corchorus olitorius HOM05D006997 ORTHO05D008713 6.2e-23 112.8 242 31.0
Migut.N02878 Erythranthe guttata HOM05D006997 ORTHO05D008713 6.2e-23 112.8 360 26.9
Gohir.D01G115600 Gossypium hirsutum HOM05D006997 ORTHO05D008713 6.2e-23 112.8 242 30.6
Lj4C96G9 Lonicera japonica HOM05D006997 ORTHO05D008713 6.2e-23 112.8 306 28.1
Psat2g000280 Pisum sativum HOM05D006997 ORTHO05D008713 6.2e-23 112.8 261 29.1
AagrBONN_evm.TU.Sc2ySwM_228.3329 Anthoceros agrestis HOM05D006997 ORTHO05D008713 2.4e-22 110.9 372 25.5
vmacro21291 Vaccinium macrocarpon HOM05D006997 ORTHO05D008713 2.4e-22 110.9 256 29.3
Glyma.08G367700 Glycine max HOM05D007440 ORTHO05D009418 3.1e-22 110.5 73 68.5
Thecc.02G308000 Theobroma cacao HOM05D007440 ORTHO05D009418 3.1e-22 110.5 76 72.4
Rhsim06G0078000 Rhododendron simsii HOM05D006997 ORTHO05D008713 1.2e-21 108.6 245 29.4
Atru.chr13.2418 Acer truncatum HOM05D007440 ORTHO05D009418 2.2e-20 104.4 161 41.6
ClCG11G014320 Citrullus lanatus HOM05D006997 ORTHO05D008713 2.2e-20 104.4 394 25.6
arahy.Tifrunner.gnm1.ann1.M6BDRX Arachis hypogaea HOM05D006997 ORTHO05D008713 1.1e-19 102.1 395 25.6
SEGI_15929 Sequoiadendron giganteum HOM05D007440 ORTHO05D009418 2.4e-19 100.9 129 41.1
DCAR_012882 Daucus carota HOM05D006997 ORTHO05D008713 5.4e-19 99.8 260 27.7
ECA247G2990 Erigeron canadensis HOM05D007440 ORTHO05D009418 7.1e-19 99.4 107 48.6
Aqoxy5G01920 Aquilegia oxysepala HOM05D006997 ORTHO05D008713 2.7e-18 97.4 341 26.4
arahy.Tifrunner.gnm1.ann1.I3UG1J Arachis hypogaea HOM05D006997 ORTHO05D008713 4.6e-18 96.7 375 25.3
Ca_20316_v3 Cicer arietinum L. HOM05D006997 ORTHO05D008713 1.0e-17 95.5 279 27.6
SGA_v2.0_scaffold28G11904 Striga asiatica HOM05D006997 ORTHO05D008713 8.7e-17 92.4 200 31.5
Dinv07073 Davidia involucrata HOM05D006997 ORTHO05D008713 3.1e-14 84.0 199 29.6
MD15G1376400 Malus domestica HOM05D006997 ORTHO05D008713 4.0e-14 83.6 202 29.2
CBR_g19661 Chara braunii HOM05D006997 ORTHO05D008713 3.3e-08 63.9 203 26.6


User provided reference genes

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