Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0012073 Sechium edule HOM05D003800 ORTHO05D004549 1.9e-164 582.4 286 100.0
ClCG11G010680 Citrullus lanatus HOM05D003800 ORTHO05D004549 1.2e-137 493.4 287 86.8
CsaV3_2G009720 Cucumis sativus L. HOM05D003800 ORTHO05D004549 1.8e-135 486.1 287 84.7
MELO3C008717.2 Cucumis melo HOM05D003800 ORTHO05D004549 7.0e-135 484.2 287 84.7
Glyma.18G242300 Glycine max HOM05D003800 ORTHO05D004549 3.3e-116 422.2 297 72.4
VMungo1383G1495 Vigna mungo HOM05D003800 ORTHO05D004549 4.3e-116 421.8 244 82.8
Potri.019G053700 Populus trichocarpa HOM05D003800 ORTHO05D004549 9.5e-116 420.6 261 78.9
Peaxi162Scf00048g00815 Petunia axillaris HOM05D003800 ORTHO05D004549 1.2e-115 420.2 280 75.7
Sc09g0001450 Simmondsia chinensis HOM05D003800 ORTHO05D004549 1.2e-115 420.2 290 71.7
Nn7g38203 Nelumbo nucifera HOM05D003800 ORTHO05D004549 1.6e-115 419.9 259 78.8
Prupe.6G361700 Prunus persica HOM05D003800 ORTHO05D004549 3.6e-115 418.7 275 75.3
Phvul.008G054025 Phaseolus vulgaris HOM05D003800 ORTHO05D004549 4.7e-115 418.3 270 76.7
Migut.F01872 Erythranthe guttata HOM05D003800 ORTHO05D004549 6.2e-115 417.9 298 71.8
PGSC0003DMG400007268 Solanum tuberosum HOM05D003800 ORTHO05D004549 1.0e-114 417.2 285 73.7
Medtr7g080060 Medicago truncatula HOM05D003800 ORTHO05D004549 1.4e-114 416.8 288 72.6
Lj1g0015068 Lotus japonicus HOM05D003800 ORTHO05D004549 1.8e-114 416.4 291 72.9
Atru.chr12.1779 Acer truncatum HOM05D003800 ORTHO05D004549 2.3e-114 416.0 273 75.8
AL3G12190 Arabidopsis lyrata HOM05D003800 ORTHO05D004549 3.1e-114 415.6 270 74.8
Glyma.09G250200 Glycine max HOM05D003800 ORTHO05D004549 3.1e-114 415.6 242 81.8
Nitab4.5_0001435g0050 Nicotiana tabacum HOM05D003800 ORTHO05D004549 5.2e-114 414.8 282 74.1
CAN.G217.10 Capsicum annuum HOM05D003800 ORTHO05D004549 6.8e-114 414.5 272 75.7
ClCG03G010650 Citrullus lanatus HOM05D003800 ORTHO05D004549 6.8e-114 414.5 234 82.9
Lalb_Chr01g0020421 Lupinus albus HOM05D003800 ORTHO05D004549 6.8e-114 414.5 250 80.4
Ciclev10012312m.g Citrus clementina HOM05D003800 ORTHO05D004549 8.9e-114 414.1 282 73.8
TPR.G31802 Trifolium pratense HOM05D003800 ORTHO05D004549 8.9e-114 414.1 267 76.0
Dinv10508 Davidia involucrata HOM05D003800 ORTHO05D004549 1.2e-113 413.7 261 76.6
Lsat_1_v5_gn_2_17540 Lactuca sativa HOM05D003800 ORTHO05D004549 1.2e-113 413.7 279 72.4
TWI18G1194 Tripterygium wilfordii HOM05D003800 ORTHO05D004549 1.2e-113 413.7 295 71.5
Nitab4.5_0000971g0070 Nicotiana tabacum HOM05D003800 ORTHO05D004549 2.0e-113 412.9 231 84.0
Oeu023172.1 Olea europaea HOM05D003800 ORTHO05D004549 2.0e-113 412.9 234 82.9
CSS0026150 Camellia sinensis var. sinensis HOM05D003800 ORTHO05D004549 3.4e-113 412.1 257 76.7
HanXRQChr04g0095031 Helianthus annuus HOM05D003800 ORTHO05D004549 4.4e-113 411.8 240 81.2
Nitab4.5_0003099g0070 Nicotiana tabacum HOM05D003800 ORTHO05D004549 4.4e-113 411.8 268 75.4
TAR365G0109 Trochodendron aralioides HOM05D003800 ORTHO05D004549 4.4e-113 411.8 284 73.9
MELO3C010053.2 Cucumis melo HOM05D003800 ORTHO05D004549 5.8e-113 411.4 234 82.1
CAN.G694.23 Capsicum annuum HOM05D003800 ORTHO05D004549 7.5e-113 411.0 236 82.2
Cfa006258 Carpinus fangiana HOM05D003800 ORTHO05D004549 7.5e-113 411.0 294 70.7
CsaV3_1G044500 Cucumis sativus L. HOM05D003800 ORTHO05D004549 7.5e-113 411.0 234 82.5
QL08p020626 Quercus lobata HOM05D003800 ORTHO05D004549 9.8e-113 410.6 262 76.7
Solyc05g055760.3 Solanum lycopersicum HOM05D003800 ORTHO05D004549 9.8e-113 410.6 231 83.5
Sopen05g034170 Solanum pennellii HOM05D003800 ORTHO05D004549 9.8e-113 410.6 231 83.5
Psat3g138120 Pisum sativum HOM05D003800 ORTHO05D004549 1.3e-112 410.2 273 74.7
Sopen04g025300 Solanum pennellii HOM05D003800 ORTHO05D004549 1.3e-112 410.2 291 71.1
DCAR_015080 Daucus carota HOM05D003800 ORTHO05D004549 1.7e-112 409.8 235 82.6
TWI75G1224 Tripterygium wilfordii HOM05D003800 ORTHO05D004549 1.7e-112 409.8 294 70.4
MSTRG.329 Avicennia marina HOM05D003800 ORTHO05D004549 2.9e-112 409.1 242 81.0
Dinv29095 Davidia involucrata HOM05D003800 ORTHO05D004549 2.9e-112 409.1 240 80.0
Gorai.004G262800 Gossypium raimondii HOM05D003800 ORTHO05D004549 2.9e-112 409.1 263 76.0
PGR119G0297 Punica granatum HOM05D003800 ORTHO05D004549 2.9e-112 409.1 298 69.1
SGA_v2.0_scaffold340G49303 Striga asiatica HOM05D003800 ORTHO05D004549 2.9e-112 409.1 243 79.8
PGSC0003DMG400023359 Solanum tuberosum HOM05D003800 ORTHO05D004549 3.7e-112 408.7 229 83.4
THA.LOC104802955 Tarenaya hassleriana HOM05D003800 ORTHO05D004549 3.7e-112 408.7 260 76.2
CiPaw.08G114800 Carya illinoinensis HOM05D003800 ORTHO05D004549 6.4e-112 407.9 273 74.0
Eucgr.H01393 Eucalyptus grandis HOM05D003800 ORTHO05D004549 6.4e-112 407.9 294 70.4
Solyc04g056390.3 Solanum lycopersicum HOM05D003800 ORTHO05D004549 6.4e-112 407.9 291 70.4
Carub.0003s0188 Capsella rubella HOM05D003800 ORTHO05D004549 8.3e-112 407.5 270 73.0
Cc09_g03670 Coffea canephora HOM05D003800 ORTHO05D004549 8.3e-112 407.5 234 81.2
Lj1A574T25 Lonicera japonica HOM05D003800 ORTHO05D004549 8.3e-112 407.5 231 82.7
MD12G1086800 Malus domestica HOM05D003800 ORTHO05D004549 8.3e-112 407.5 293 71.0
Gohir.A08G225900 Gossypium hirsutum HOM05D003800 ORTHO05D004549 1.1e-111 407.1 263 75.7
PSO357G0181 Papaver somniferum HOM05D003800 ORTHO05D004549 1.1e-111 407.1 229 83.4
Eucgr.A01783 Eucalyptus grandis HOM05D003800 ORTHO05D004549 1.4e-111 406.8 235 82.1
Rhsim09G0130100 Rhododendron simsii HOM05D003800 ORTHO05D004549 1.4e-111 406.8 261 75.5
AT3G02780 Arabidopsis thaliana HOM05D003800 ORTHO05D004549 1.9e-111 406.4 274 72.6
CAN.G694.24 Capsicum annuum HOM05D003800 ORTHO05D004549 2.4e-111 406.0 236 81.8
Cpa.g.sc1105.3 Carica papaya HOM05D003800 ORTHO05D004549 2.4e-111 406.0 233 81.5
RcHm_v2.0_Chr3g0447851 Rosa chinensis HOM05D003800 ORTHO05D004549 2.4e-111 406.0 262 76.0
vmacro10405 Vaccinium macrocarpon HOM05D003800 ORTHO05D004549 2.4e-111 406.0 252 77.4
MSTRG.27390 Avicennia marina HOM05D003800 ORTHO05D004549 3.2e-111 405.6 249 76.3
CiPaw.07G080800 Carya illinoinensis HOM05D003800 ORTHO05D004549 3.2e-111 405.6 233 81.1
MD04G1245100 Malus domestica HOM05D003800 ORTHO05D004549 3.2e-111 405.6 292 69.9
A03p33110 Brassica napus HOM05D003800 ORTHO05D004549 4.1e-111 405.2 242 78.9
AUR62000306 Chenopodium quinoa HOM05D003800 ORTHO05D004549 4.1e-111 405.2 229 82.1
Manes.12G005500 Manihot esculenta HOM05D003800 ORTHO05D004549 4.1e-111 405.2 281 71.2
PGR031G1622 Punica granatum HOM05D003800 ORTHO05D004549 4.1e-111 405.2 281 71.9
Actinidia06803 Actinidia chinensis HOM05D003800 ORTHO05D004549 5.4e-111 404.8 272 74.3
Lalb_Chr06g0168491 Lupinus albus HOM05D003800 ORTHO05D004549 5.4e-111 404.8 235 80.0
Aqoxy2G04026 Aquilegia oxysepala HOM05D003800 ORTHO05D004549 7.0e-111 404.4 242 79.3
FvH4_6g00470 Fragaria vesca HOM05D003800 ORTHO05D004549 7.0e-111 404.4 242 79.3
FAN09G3800 Fragaria x ananassa HOM05D003800 ORTHO05D004549 9.2e-111 404.1 242 79.3
BcaC05g30508 Brassica carinata HOM05D003800 ORTHO05D004549 1.2e-110 403.7 238 79.8
BraA03t12481Z Brassica rapa HOM05D003800 ORTHO05D004549 1.2e-110 403.7 242 78.5
AUR62006651 Chenopodium quinoa HOM05D003800 ORTHO05D004549 1.2e-110 403.7 229 81.7
Migut.F02135 Erythranthe guttata HOM05D003800 ORTHO05D004549 1.6e-110 403.3 231 81.4
FAN05G4594 Fragaria x ananassa HOM05D003800 ORTHO05D004549 1.6e-110 403.3 235 80.9
MSTRG.8210 Avicennia marina HOM05D003800 ORTHO05D004549 2.0e-110 402.9 234 80.3
BcaC05g30511 Brassica carinata HOM05D003800 ORTHO05D004549 2.0e-110 402.9 264 75.0
C03p40290 Brassica napus HOM05D003800 ORTHO05D004549 2.0e-110 402.9 236 79.7
C09p75900 Brassica napus HOM05D003800 ORTHO05D004549 2.0e-110 402.9 264 75.0
BolC3t16294H Brassica oleracea HOM05D003800 ORTHO05D004549 2.0e-110 402.9 236 79.7
BolC5t35067H Brassica oleracea HOM05D003800 ORTHO05D004549 2.0e-110 402.9 264 75.0
Thhalv10020933m.g Eutrema salsugineum HOM05D003800 ORTHO05D004549 2.0e-110 402.9 240 78.3
Gohir.D08G246300 Gossypium hirsutum HOM05D003800 ORTHO05D004549 2.0e-110 402.9 263 74.9
THA.LOC104820922 Tarenaya hassleriana HOM05D003800 ORTHO05D004549 2.0e-110 402.9 242 78.9
Ah.06g195450 Amaranthus hybridus HOM05D003800 ORTHO05D004549 2.7e-110 402.5 242 77.3
Os07g0546000 Oryza sativa ssp. japonica HOM05D003800 ORTHO05D004549 2.7e-110 402.5 235 80.4
Sp3g01810 Schrenkiella parvula HOM05D003800 ORTHO05D004549 2.7e-110 402.5 238 79.0
Thecc.05G194400 Theobroma cacao HOM05D003800 ORTHO05D004549 2.7e-110 402.5 271 75.3
GSVIVG01019089001 Vitis vinifera HOM05D003800 ORTHO05D004549 2.7e-110 402.5 228 82.0
A05p44340 Brassica napus HOM05D003800 ORTHO05D004549 3.5e-110 402.1 289 70.9
BraA06t23290Z Brassica rapa HOM05D003800 ORTHO05D004549 3.5e-110 402.1 289 70.9
CSS0014154 Camellia sinensis var. sinensis HOM05D003800 ORTHO05D004549 4.6e-110 401.7 229 81.2
MBI07_g36332_MAGBIO Magnolia biondii HOM05D003800 ORTHO05D004549 6.0e-110 401.4 256 74.6
Zm00001eb323510 Zea mays HOM05D003800 ORTHO05D004549 1.0e-109 400.6 235 79.1
CARHR076790 Cardamine hirsuta HOM05D003800 ORTHO05D004549 1.3e-109 400.2 240 77.5
HanXRQChr09g0257801 Helianthus annuus HOM05D003800 ORTHO05D004549 1.3e-109 400.2 283 70.0
Actinidia03293 Actinidia chinensis HOM05D003800 ORTHO05D004549 2.3e-109 399.4 279 72.4
AT5G16440 Arabidopsis thaliana HOM05D003800 ORTHO05D004549 2.3e-109 399.4 261 72.8
Duzib128G1178 Durio zibethinus HOM05D003800 ORTHO05D004549 2.3e-109 399.4 285 70.2
EL10Ac4g09961 Beta vulgaris HOM05D003800 ORTHO05D004549 3.0e-109 399.1 281 69.8
Peaxi162Scf00156g00114 Petunia axillaris HOM05D003800 ORTHO05D004549 3.0e-109 399.1 251 76.5
Actinidia38903 Actinidia chinensis HOM05D003800 ORTHO05D004549 5.0e-109 398.3 234 79.1
arahy.Tifrunner.gnm1.ann1.BW88YF Arachis hypogaea HOM05D003800 ORTHO05D004549 5.0e-109 398.3 259 75.7
AL6G27370 Arabidopsis lyrata HOM05D003800 ORTHO05D004549 6.6e-109 397.9 280 69.3
PSO017G2843 Papaver somniferum HOM05D003800 ORTHO05D004549 6.6e-109 397.9 253 76.3
Thhalv10014571m.g Eutrema salsugineum HOM05D003800 ORTHO05D004549 1.1e-108 397.1 229 79.9
Ah.04g158990 Amaranthus hybridus HOM05D003800 ORTHO05D004549 1.5e-108 396.7 248 75.4
Carub.0006s1463 Capsella rubella HOM05D003800 ORTHO05D004549 1.5e-108 396.7 265 72.8
Manes.13G005300 Manihot esculenta HOM05D003800 ORTHO05D004549 1.9e-108 396.4 251 75.3
PSO675G7217 Papaver somniferum HOM05D003800 ORTHO05D004549 1.9e-108 396.4 253 75.9
Os05g0413400 Oryza sativa ssp. japonica HOM05D003800 ORTHO05D004549 2.5e-108 396.0 239 75.7
BNapus_Darmor_BZH_scaffold_99p00290 Brassica napus HOM05D003800 ORTHO05D004549 4.3e-108 395.2 257 73.5
BcaB04g21400 Brassica carinata HOM05D003800 ORTHO05D004549 9.5e-108 394.0 286 69.6
Duzib177G0232 Durio zibethinus HOM05D003800 ORTHO05D004549 9.5e-108 394.0 264 73.1
ATR1145G078 Amborella trichopoda HOM05D003800 ORTHO05D004549 1.2e-107 393.7 270 71.5
BcaNung04309 Brassica carinata HOM05D003800 ORTHO05D004549 2.1e-107 392.9 286 69.2
BolC1t05871H Brassica oleracea HOM05D003800 ORTHO05D004549 2.1e-107 392.9 286 69.2
BolC3t13395H Brassica oleracea HOM05D003800 ORTHO05D004549 2.1e-107 392.9 261 73.6
CARHR196820 Cardamine hirsuta HOM05D003800 ORTHO05D004549 2.8e-107 392.5 280 70.0
Zm00001eb349410 Zea mays HOM05D003800 ORTHO05D004549 6.2e-107 391.3 233 77.3
SGA_v2.0_scaffold62G21505 Striga asiatica HOM05D003800 ORTHO05D004549 1.4e-106 390.2 317 64.4
C03p08990 Brassica napus HOM05D003800 ORTHO05D004549 2.3e-106 389.4 261 72.8
Aa31LG11G13220 Aethionema arabicum HOM05D003800 ORTHO05D004549 4.0e-106 388.7 229 77.7
ECA232G0651 Erigeron canadensis HOM05D003800 ORTHO05D004549 4.0e-106 388.7 268 70.5
Lsat_1_v5_gn_8_2340 Lactuca sativa HOM05D003800 ORTHO05D004549 4.0e-106 388.7 282 68.1
Aa31LG5G13250 Aethionema arabicum HOM05D003800 ORTHO05D004549 5.2e-106 388.3 259 73.7
Sabra19G0062900 Salix brachista HOM05D003800 ORTHO05D004549 6.8e-106 387.9 304 66.1
CDE05G0693 Ceratophyllum demersum HOM05D003800 ORTHO05D004549 2.6e-105 386.0 229 76.9
TAR636G3604 Trochodendron aralioides HOM05D003800 ORTHO05D004549 2.6e-105 386.0 228 79.8
BraA03t10104Z Brassica rapa HOM05D003800 ORTHO05D004549 3.4e-105 385.6 262 73.7
CDE02G3521 Ceratophyllum demersum HOM05D003800 ORTHO05D004549 1.1e-103 380.6 254 71.7
BraA01t04615Z Brassica rapa HOM05D003800 ORTHO05D004549 1.9e-103 379.8 257 71.6
SEGI_07465 Sequoiadendron giganteum HOM05D003800 ORTHO05D004549 1.9e-103 379.8 240 75.4
unitig_26.g8931 Utricularia gibba HOM05D005721 ORTHO05D006758 7.1e-103 377.9 275 67.3
PSO170G0032 Papaver somniferum HOM05D003800 ORTHO05D004549 9.2e-103 377.5 229 79.0
Pp3c1_33430 Physcomitrium patens HOM05D003800 ORTHO05D004549 2.7e-102 375.9 272 69.1
FAN02G2831 Fragaria x ananassa HOM05D003800 ORTHO05D004549 1.0e-101 374.0 218 80.3
Nitab4.5_0000083g0120 Nicotiana tabacum HOM05D003800 ORTHO05D004549 3.0e-101 372.5 271 69.0
A03p07770 Brassica napus HOM05D003800 ORTHO05D004549 6.6e-101 371.3 262 72.1
SMO367G0306 Selaginella moellendorffii HOM05D003800 ORTHO05D004549 1.2e-99 367.1 228 76.8
unitig_61.g26276 Utricularia gibba HOM05D003800 ORTHO05D004549 2.1e-99 366.3 215 78.1
Mapoly0066s0080 Marchantia polymorpha HOM05D003800 ORTHO05D004549 8.1e-99 364.4 239 73.2
AagrBONN_evm.TU.Sc2ySwM_344.2844 Anthoceros agrestis HOM05D003800 ORTHO05D004549 4.0e-98 362.1 238 72.7
CDE05G3592 Ceratophyllum demersum HOM05D003800 ORTHO05D004549 4.0e-98 362.1 217 77.0
arahy.Tifrunner.gnm1.ann1.7Y2C76 Arachis hypogaea HOM05D003800 ORTHO05D004549 2.0e-97 359.8 231 75.8
ECA238G3407 Erigeron canadensis HOM05D003800 ORTHO05D004549 1.1e-95 354.0 196 85.2
Oeu046895.1 Olea europaea HOM05D003800 ORTHO05D004549 1.2e-91 340.5 194 82.5
CBR_g48525 Chara braunii HOM05D003800 ORTHO05D004549 2.8e-91 339.3 221 69.7
Haze_04560 Corylus avellana HOM05D003800 ORTHO05D004549 4.7e-91 338.6 200 79.0
MBI11_g44548_MAGBIO Magnolia biondii HOM05D003800 ORTHO05D004549 4.4e-89 332.0 194 77.8
BcaB04g19388 Brassica carinata HOM05D003800 ORTHO05D004549 5.8e-89 331.6 232 69.8
Ca_07990_v3 Cicer arietinum L. HOM05D003800 ORTHO05D004549 1.4e-87 327.0 233 69.1
FAN14G0085 Fragaria x ananassa HOM05D003800 ORTHO05D004549 5.4e-87 325.1 204 77.0
Zm00001eb288110 Zea mays HOM05D003800 ORTHO05D004549 6.2e-83 311.6 192 75.5
Lju50C0T2 Lonicera japonica HOM05D003800 ORTHO05D004549 7.9e-78 294.7 176 79.5
Sed0006377 Sechium edule HOM05D003800 ORTHO05D004549 1.6e-67 260.4 145 84.1
Sp6g27750 Schrenkiella parvula HOM05D003800 ORTHO05D004549 4.2e-63 245.7 180 69.4
PRCOL_00001613 Prasinoderma coloniale HOM05D003800 ORTHO05D004549 1.8e-61 240.4 242 52.1
COL.COLO4_38023 Corchorus olitorius HOM05D003800 ORTHO05D004549 1.3e-59 234.2 132 82.6
CBR_g16018 Chara braunii HOM05D000019 ORTHO05D000353 1.2e-54 217.6 221 49.8
MCO12G260 Micromonas commoda HOM05D003800 ORTHO05D004549 4.8e-51 205.7 255 44.7
BNapus_Darmor_BZH_scaffold_122p00260 Brassica napus HOM05D003800 ORTHO05D004549 1.8e-42 177.2 99 78.8
Haze_26091 Corylus avellana HOM05D003800 ORTHO05D004549 2.2e-40 170.2 226 40.3
Cre11.g467544 Chlamydomonas reinhardtii HOM05D003800 ORTHO05D004549 6.5e-40 168.7 244 41.0
HanXRQChr09g0257811 Helianthus annuus HOM05D003800 ORTHO05D004549 1.4e-26 124.4 110 58.2
BNapus_Darmor_BZH_scaffold_122p00270 Brassica napus HOM05D003800 ORTHO05D004549 1.6e-25 120.9 130 56.9
TPR.G14062 Trifolium pratense HOM05D001872 ORTHO05D001859 5.5e-23 112.5 126 53.2
FvH4_6g42310 Fragaria vesca HOM05D003800 ORTHO05D045511 4.4e-20 102.8 74 68.9
FAN14G4609 Fragaria x ananassa HOM05D003800 ORTHO05D045511 4.4e-20 102.8 74 68.9
CDE09G0057 Ceratophyllum demersum HOM05D003800 ORTHO05D004549 1.4e-18 97.8 72 65.3
Nitab4.5_0000195g0040 Nicotiana tabacum HOM05D003800 ORTHO05D004549 1.6e-17 94.4 120 44.2
Nitab4.5_0000740g0050 Nicotiana tabacum HOM05D003800 ORTHO05D011827 1.7e-16 90.9 85 55.3
Eucgr.A01782 Eucalyptus grandis HOM05D007208 ORTHO05D009090 1.6e-14 84.3 59 67.8
PGSC0003DMG400012082 Solanum tuberosum HOM05D003800 ORTHO05D004549 3.7e-11 73.2 91 51.6
Nitab4.5_0007043g0020 Nicotiana tabacum HOM05D013000 ORTHO05D011827 1.2e-06 58.2 68 50.0
Haze_16698 Corylus avellana HOM05D004228 ORTHO05D005137 2.8e-06 57.0 143 29.4


User provided reference genes

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