Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0011885 Sechium edule HOM05D004227 ORTHO05D005027 1.0e-84 316.6 154 100.0
CsaV3_3G007250 Cucumis sativus L. HOM05D004227 ORTHO05D005027 7.4e-83 310.5 152 98.7
TWI23G1276 Tripterygium wilfordii HOM05D004227 ORTHO05D005027 7.7e-80 300.4 152 96.1
Actinidia13618 Actinidia chinensis HOM05D004227 ORTHO05D005027 1.3e-79 299.7 154 92.9
CSS0010737 Camellia sinensis var. sinensis HOM05D004227 ORTHO05D005027 1.3e-79 299.7 154 92.9
Gohir.A08G057900 Gossypium hirsutum HOM05D004227 ORTHO05D005027 2.9e-79 298.5 154 94.8
Gohir.D08G067200 Gossypium hirsutum HOM05D004227 ORTHO05D005027 2.9e-79 298.5 154 94.8
Gorai.004G069800 Gossypium raimondii HOM05D004227 ORTHO05D005027 2.9e-79 298.5 154 94.8
arahy.Tifrunner.gnm1.ann1.CPA9TZ Arachis hypogaea HOM05D004227 ORTHO05D005027 6.5e-79 297.4 147 97.3
arahy.Tifrunner.gnm1.ann1.RC63K2 Arachis hypogaea HOM05D004227 ORTHO05D005027 6.5e-79 297.4 147 97.3
Gohir.D11G079800 Gossypium hirsutum HOM05D004227 ORTHO05D005027 6.5e-79 297.4 154 94.2
Hma1.2p1_1508F.1_g287710 Hydrangea macrophylla HOM05D004227 ORTHO05D005027 6.5e-79 297.4 147 97.3
Thecc.01G396100 Theobroma cacao HOM05D004227 ORTHO05D005027 6.5e-79 297.4 154 94.2
CANSAT25G0195 Cannabis sativa HOM05D004227 ORTHO05D005027 8.5e-79 297.0 154 92.9
Duzib133G0083 Durio zibethinus HOM05D004227 ORTHO05D005027 8.5e-79 297.0 154 94.2
Migut.F00534 Erythranthe guttata HOM05D004227 ORTHO05D005027 8.5e-79 297.0 151 93.4
Gohir.A11G075100 Gossypium hirsutum HOM05D004227 ORTHO05D005027 8.5e-79 297.0 154 94.2
Gorai.007G085400 Gossypium raimondii HOM05D004227 ORTHO05D005027 8.5e-79 297.0 154 94.2
Duzib138G0704 Durio zibethinus HOM05D004227 ORTHO05D005027 1.1e-78 296.6 154 94.2
Ciclev10022690m.g Citrus clementina HOM05D004227 ORTHO05D005027 1.5e-78 296.2 147 96.6
TWI59G0764 Tripterygium wilfordii HOM05D004227 ORTHO05D005027 1.5e-78 296.2 152 94.1
Cpa.g.sc22.26 Carica papaya HOM05D004227 ORTHO05D005027 1.9e-78 295.8 154 92.9
Glyma.07G115700 Glycine max HOM05D004227 ORTHO05D005027 1.9e-78 295.8 147 96.6
Psat5g001800 Pisum sativum HOM05D004227 ORTHO05D005027 2.5e-78 295.4 151 94.7
Rhsim03G0159900 Rhododendron simsii HOM05D004227 ORTHO05D005027 2.5e-78 295.4 150 94.0
Actinidia31661 Actinidia chinensis HOM05D004227 ORTHO05D005027 3.2e-78 295.0 147 95.2
Medtr3g118110 Medicago truncatula HOM05D004227 ORTHO05D005027 3.2e-78 295.0 147 96.6
TPR.G38529 Trifolium pratense HOM05D004227 ORTHO05D005027 3.2e-78 295.0 147 96.6
CDE06G1820 Ceratophyllum demersum HOM05D004227 ORTHO05D005027 4.2e-78 294.7 154 92.9
CDE06G1835 Ceratophyllum demersum HOM05D004227 ORTHO05D005027 4.2e-78 294.7 154 92.9
Dinv43609 Davidia involucrata HOM05D004227 ORTHO05D005027 4.2e-78 294.7 147 95.9
Dinv44054 Davidia involucrata HOM05D004227 ORTHO05D005027 4.2e-78 294.7 154 92.9
Nitab4.5_0003321g0070 Nicotiana tabacum HOM05D004227 ORTHO05D005027 4.2e-78 294.7 154 92.2
Glyma.03G109200 Glycine max HOM05D004227 ORTHO05D005027 5.5e-78 294.3 147 95.9
Lj3g0003497 Lotus japonicus HOM05D004227 ORTHO05D005027 5.5e-78 294.3 151 94.0
Lj3g0012613 Lotus japonicus HOM05D004227 ORTHO05D005027 5.5e-78 294.3 151 94.0
Potri.014G049700 Populus trichocarpa HOM05D004227 ORTHO05D005027 5.5e-78 294.3 154 92.2
SGA_v2.0_scaffold44G16581 Striga asiatica HOM05D004227 ORTHO05D005027 5.5e-78 294.3 154 92.9
Nitab4.5_0002359g0040 Nicotiana tabacum HOM05D004227 ORTHO05D005027 7.2e-78 293.9 154 92.2
PSO063G7112 Papaver somniferum HOM05D004227 ORTHO05D005027 7.2e-78 293.9 147 95.9
PSO782G5116 Papaver somniferum HOM05D004227 ORTHO05D005027 7.2e-78 293.9 147 95.9
Nitab4.5_0002153g0060 Nicotiana tabacum HOM05D004227 ORTHO05D005027 9.4e-78 293.5 150 93.3
VMungo0331G1366 Vigna mungo HOM05D004227 ORTHO05D005027 9.4e-78 293.5 147 95.9
Ca_15636_v3 Cicer arietinum L. HOM05D004227 ORTHO05D005027 1.2e-77 293.1 147 95.9
FAN06G3355 Fragaria x ananassa HOM05D004227 ORTHO05D005027 1.2e-77 293.1 153 91.5
Nn1g00815 Nelumbo nucifera HOM05D004227 ORTHO05D005027 1.2e-77 293.1 147 95.2
Phvul.010G046900 Phaseolus vulgaris HOM05D004227 ORTHO05D005027 1.2e-77 293.1 147 95.9
Hund24961 Selenicereus undatus HOM05D004227 ORTHO05D005027 1.2e-77 293.1 154 93.5
PGR004G2111 Punica granatum HOM05D004227 ORTHO05D005027 1.6e-77 292.7 154 91.6
Ah.01g017970 Amaranthus hybridus HOM05D004227 ORTHO05D005027 2.1e-77 292.4 154 92.2
MSTRG.27225 Avicennia marina HOM05D004227 ORTHO05D005027 2.1e-77 292.4 154 91.6
Potri.002G138500 Populus trichocarpa HOM05D004227 ORTHO05D005027 2.1e-77 292.4 152 91.4
TAR636G2330 Trochodendron aralioides HOM05D004227 ORTHO05D005027 2.1e-77 292.4 147 94.6
PGR004G2481 Punica granatum HOM05D004227 ORTHO05D005027 2.7e-77 292.0 147 94.6
unitig_46.g18760 Utricularia gibba HOM05D004227 ORTHO05D005027 2.7e-77 292.0 151 91.4
FAN01G2506 Fragaria x ananassa HOM05D004227 ORTHO05D005027 3.6e-77 291.6 151 92.1
FAN03G2167 Fragaria x ananassa HOM05D004227 ORTHO05D005027 3.6e-77 291.6 151 92.1
FAN10G0507 Fragaria x ananassa HOM05D004227 ORTHO05D005027 3.6e-77 291.6 151 92.1
FAN10G0749 Fragaria x ananassa HOM05D004227 ORTHO05D005027 3.6e-77 291.6 151 92.1
RcHm_v2.0_Chr1g0348061 Rosa chinensis HOM05D004227 ORTHO05D005027 3.6e-77 291.6 151 92.1
MD07G1109700 Malus domestica HOM05D004227 ORTHO05D005027 6.1e-77 290.8 151 92.7
HPP92_014889 Vanilla planifolia HOM05D004227 ORTHO05D005027 6.1e-77 290.8 146 94.5
HPP92_014893 Vanilla planifolia HOM05D004227 ORTHO05D005027 6.1e-77 290.8 146 94.5
FAN06G2246 Fragaria x ananassa HOM05D004227 ORTHO05D005027 8.0e-77 290.4 151 91.4
SEGI_06195 Sequoiadendron giganteum HOM05D004227 ORTHO05D005027 8.0e-77 290.4 151 94.0
Solyc03g093680.4 Solanum lycopersicum HOM05D004227 ORTHO05D005027 8.0e-77 290.4 150 92.0
Sopen03g024580 Solanum pennellii HOM05D004227 ORTHO05D005027 8.0e-77 290.4 150 92.0
ECA232G0872 Erigeron canadensis HOM05D004227 ORTHO05D005027 1.0e-76 290.0 145 94.5
Glyma.15G097500 Glycine max HOM05D004227 ORTHO05D005027 1.0e-76 290.0 147 94.6
HanXRQChr09g0252831 Helianthus annuus HOM05D004227 ORTHO05D005027 1.0e-76 290.0 145 94.5
Lsat_1_v5_gn_0_10121 Lactuca sativa HOM05D004227 ORTHO05D005027 1.0e-76 290.0 145 94.5
Lalb_Chr06g0171081 Lupinus albus HOM05D004227 ORTHO05D005027 1.0e-76 290.0 154 91.6
Pp3c2_21720 Physcomitrium patens HOM05D004227 ORTHO05D005027 1.0e-76 290.0 154 90.3
Aqoxy3G01907 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 1.4e-76 289.7 154 92.9
EL10Ac6g14165 Beta vulgaris HOM05D004227 ORTHO05D005027 1.4e-76 289.7 154 92.2
Phvul.006G161800 Phaseolus vulgaris HOM05D004227 ORTHO05D005027 1.4e-76 289.7 147 94.6
Prupe.2G133100 Prunus persica HOM05D004227 ORTHO05D005027 1.4e-76 289.7 151 92.1
COL.COLO4_12397 Corchorus olitorius HOM05D004227 ORTHO05D005027 1.8e-76 289.3 154 92.2
Manes.05G055700 Manihot esculenta HOM05D004227 ORTHO05D005027 1.8e-76 289.3 147 94.6
Pp3c1_16440 Physcomitrium patens HOM05D004227 ORTHO05D005027 1.8e-76 289.3 154 89.6
AagrBONN_evm.TU.Sc2ySwM_344.2698 Anthoceros agrestis HOM05D004227 ORTHO05D005027 3.0e-76 288.5 152 92.8
Aqoxy91s003 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 3.0e-76 288.5 154 92.9
SEGI_27062 Sequoiadendron giganteum HOM05D004227 ORTHO05D005027 3.0e-76 288.5 151 93.4
AUR62014174 Chenopodium quinoa HOM05D004227 ORTHO05D005027 4.0e-76 288.1 147 94.6
Eucgr.D01223 Eucalyptus grandis HOM05D004227 ORTHO05D005027 6.8e-76 287.3 154 90.3
THA.LOC104816996 Tarenaya hassleriana HOM05D004227 ORTHO05D005027 8.8e-76 287.0 154 90.9
Os12g0287200 Oryza sativa ssp. japonica HOM05D004227 ORTHO05D005027 1.2e-75 286.6 153 90.2
HanXRQChr15g0493591 Helianthus annuus HOM05D004227 ORTHO05D005027 1.5e-75 286.2 144 93.8
CAN.G460.2 Capsicum annuum HOM05D004227 ORTHO05D005027 2.0e-75 285.8 147 92.5
COL.COLO4_14773 Corchorus olitorius HOM05D004227 ORTHO05D005027 2.6e-75 285.4 154 90.9
THA.LOC104801496 Tarenaya hassleriana HOM05D004227 ORTHO05D005027 5.7e-75 284.3 144 93.8
BcaC07g42337 Brassica carinata HOM05D004227 ORTHO05D005027 1.7e-74 282.7 154 89.6
Mapoly0032s0045 Marchantia polymorpha HOM05D004227 ORTHO05D005027 1.7e-74 282.7 147 91.8
Zm00001eb174310 Zea mays HOM05D004227 ORTHO05D005027 8.3e-74 280.4 144 91.7
Cfa009863 Carpinus fangiana HOM05D004227 ORTHO05D005027 1.1e-73 280.0 154 87.7
BcaC07g42439 Brassica carinata HOM05D004227 ORTHO05D005027 3.1e-73 278.5 147 90.5
A10p00100 Brassica napus HOM05D004227 ORTHO05D005027 3.1e-73 278.5 147 90.5
BolC8t52927H Brassica oleracea HOM05D004227 ORTHO05D005027 3.1e-73 278.5 147 90.5
BraA10t42288Z Brassica rapa HOM05D004227 ORTHO05D005027 3.1e-73 278.5 147 90.5
QL04p029953 Quercus lobata HOM05D004227 ORTHO05D005027 7.0e-73 277.3 149 89.9
QL07p006029 Quercus lobata HOM05D004227 ORTHO05D005027 7.0e-73 277.3 149 89.9
AL1G10090 Arabidopsis lyrata HOM05D004227 ORTHO05D005027 2.0e-72 275.8 147 88.4
BcaB03g13634 Brassica carinata HOM05D004227 ORTHO05D005027 2.0e-72 275.8 147 89.8
C05p00070 Brassica napus HOM05D004227 ORTHO05D005027 2.0e-72 275.8 147 89.8
Os08g0107900 Oryza sativa ssp. japonica HOM05D004227 ORTHO05D005027 2.0e-72 275.8 144 91.0
Rhsim13G0168500 Rhododendron simsii HOM05D004227 ORTHO05D005027 2.0e-72 275.8 148 89.9
Carub.0001s0001 Capsella rubella HOM05D004227 ORTHO05D005027 4.5e-72 274.6 147 89.1
Thhalv10009013m.g Eutrema salsugineum HOM05D004227 ORTHO05D005027 4.5e-72 274.6 147 87.8
CARHR000190 Cardamine hirsuta HOM05D004227 ORTHO05D005027 1.0e-71 273.5 154 86.4
CiPaw.14G019900 Carya illinoinensis HOM05D004227 ORTHO05D005027 1.0e-71 273.5 144 89.6
AT1G02140 Arabidopsis thaliana HOM05D004227 ORTHO05D005027 1.3e-71 273.1 147 87.8
ClCG05G000140 Citrullus lanatus HOM05D004227 ORTHO05D005027 5.0e-71 271.2 132 97.7
MELO3C005946.2 Cucumis melo HOM05D004227 ORTHO05D005027 5.0e-71 271.2 132 97.7
Lalb_Chr01g0012541 Lupinus albus HOM05D004227 ORTHO05D005027 6.5e-71 270.8 140 92.1
BolC5t28794H Brassica oleracea HOM05D004227 ORTHO05D005027 3.2e-70 268.5 155 85.2
Zm00001eb260270 Zea mays HOM05D004227 ORTHO05D005027 4.2e-70 268.1 143 90.2
MBI19_g27175_MAGBIO Magnolia biondii HOM05D004227 ORTHO05D005027 5.7e-67 257.7 134 92.5
unitig_37.g12485 Utricularia gibba HOM05D004227 ORTHO05D005027 5.7e-67 257.7 133 93.2
Nitab4.5_0004457g0020 Nicotiana tabacum HOM05D004227 ORTHO05D005027 2.2e-66 255.8 132 91.7
FvH4_7g10360 Fragaria vesca HOM05D004227 ORTHO05D005027 2.8e-66 255.4 145 84.1
Sp1g00120 Schrenkiella parvula HOM05D004227 ORTHO05D005027 2.8e-66 255.4 134 89.6
Lj7A548G44 Lonicera japonica HOM05D004227 ORTHO05D005027 4.9e-66 254.6 132 91.7
SalBow3G0312 Salvia bowleyana HOM05D004227 ORTHO05D005027 4.9e-66 254.6 133 88.7
TAR629G1537 Trochodendron aralioides HOM05D004227 ORTHO05D005027 4.9e-66 254.6 127 93.7
SalBow3G4020 Salvia bowleyana HOM05D004227 ORTHO05D005027 6.3e-66 254.2 131 89.3
Sc24g0004090 Simmondsia chinensis HOM05D004227 ORTHO05D005027 6.3e-66 254.2 134 91.0
PGSC0003DMG400021002 Solanum tuberosum HOM05D004227 ORTHO05D005027 6.3e-66 254.2 130 91.5
vmacro05443 Vaccinium macrocarpon HOM05D004227 ORTHO05D005027 6.3e-66 254.2 125 95.2
Atru.chr2.217 Acer truncatum HOM05D004227 ORTHO05D005027 8.3e-66 253.8 132 92.4
Oeu030870.1 Olea europaea HOM05D004227 ORTHO05D005027 2.4e-65 252.3 127 92.1
Aqoxy109s003 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 3.1e-65 251.9 149 84.6
Aqoxy3G01910 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 4.1e-65 251.5 134 91.8
Peaxi162Scf01305g00032 Petunia axillaris HOM05D004227 ORTHO05D005027 4.1e-65 251.5 130 90.8
Sabra02G0107500 Salix brachista HOM05D004227 ORTHO05D005027 4.1e-65 251.5 135 88.1
AUR62039531 Chenopodium quinoa HOM05D004227 ORTHO05D005027 7.0e-65 250.8 138 87.7
Lj9A555T36 Lonicera japonica HOM05D004227 ORTHO05D005027 1.2e-64 250.0 127 92.1
Aa31LG1G11540 Aethionema arabicum HOM05D004227 ORTHO05D005027 1.6e-64 249.6 127 92.9
Oeu046442.1 Olea europaea HOM05D004227 ORTHO05D005027 3.5e-64 248.4 131 87.8
Peaxi162Scf00304g01023 Petunia axillaris HOM05D004227 ORTHO05D005027 5.9e-64 247.7 150 84.0
A09p69360 Brassica napus HOM05D004227 ORTHO05D005027 7.7e-64 247.3 149 80.5
BraA09t42281Z Brassica rapa HOM05D004227 ORTHO05D005027 7.7e-64 247.3 149 80.5
SGA_v2.0_scaffold60G20835 Striga asiatica HOM05D004227 ORTHO05D005027 1.5e-62 243.0 146 82.2
Cre09.g392692 Chlamydomonas reinhardtii HOM05D004227 ORTHO05D005027 4.7e-61 238.0 143 74.1
MCO04G284 Micromonas commoda HOM05D004227 ORTHO05D005027 8.0e-61 237.3 144 74.3
Medtr3g109260 Medicago truncatula HOM05D004227 ORTHO05D005027 2.0e-59 232.6 146 74.7
ATR0090G010 Amborella trichopoda HOM05D004227 ORTHO05D005027 9.2e-57 223.8 150 74.7
Haze_23235 Corylus avellana HOM05D004227 ORTHO05D005027 2.5e-54 215.7 190 60.5
Pp3c1_16390 Physcomitrium patens HOM05D004227 ORTHO05D005027 4.7e-53 211.5 145 74.5
CiPaw.13G025400 Carya illinoinensis HOM05D004227 ORTHO05D005027 1.0e-52 210.3 116 87.1
SHI13620 Sapria himalayana HOM05D004227 ORTHO05D005027 3.7e-50 201.8 118 79.7
GSVIVG01013876001 Vitis vinifera HOM05D004227 ORTHO05D005027 8.3e-50 200.7 103 94.2
Lsat_1_v5_gn_2_127120 Lactuca sativa HOM05D004227 ORTHO05D005027 1.2e-48 196.8 103 90.3
Cc02_g04830 Coffea canephora HOM05D004227 ORTHO05D005027 2.0e-48 196.1 103 90.3
Haze_27249 Corylus avellana HOM05D004227 ORTHO05D005027 3.0e-47 192.2 114 77.2
CDE06G1723 Ceratophyllum demersum HOM05D004227 ORTHO05D005027 1.3e-42 176.8 87 93.1
C08p54180 Brassica napus HOM05D004227 ORTHO05D005027 2.4e-41 172.6 115 79.1
Atru.chr5.117 Acer truncatum HOM05D004227 ORTHO05D005027 5.6e-38 161.4 78 93.6
VMungo0540G1169 Vigna mungo HOM05D004227 ORTHO05D005027 2.1e-37 159.5 79 91.1
CBR_g19771 Chara braunii HOM05D004227 ORTHO05D005027 4.7e-37 158.3 81 93.8
HPP92_020677 Vanilla planifolia HOM05D004227 ORTHO05D005027 5.8e-35 151.4 142 59.2
Rhsim13G0168700 Rhododendron simsii HOM05D004227 ORTHO05D005027 1.1e-33 147.1 73 98.6
MD00G1129300 Malus domestica HOM05D004227 ORTHO05D005027 3.3e-30 135.6 73 84.9
Aqoxy3G01908 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 1.4e-28 130.2 71 88.7
Aqoxy91s002 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 5.2e-28 128.3 71 88.7
Aqoxy3G01911 Aquilegia oxysepala HOM05D002706 ORTHO05D003253 2.6e-27 125.9 71 87.3
Actinidia01038 Actinidia chinensis HOM05D004227 ORTHO05D005027 7.6e-27 124.4 83 73.5
Sed0011381 Sechium edule HOM05D004227 ORTHO05D373379 1.6e-16 90.1 45 97.8
Aqoxy109s002 Aquilegia oxysepala HOM05D002706 ORTHO05D003253 1.3e-15 87.0 46 91.3
Haze_23858 Corylus avellana HOM05D004227 ORTHO05D034883 4.0e-12 75.5 74 52.7


User provided reference genes

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