Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0011379 Sechium edule HOM05D005162 ORTHO05D007064 3.6e-183 644.8 320 100.0
ClCG11G013410 Citrullus lanatus HOM05D005162 ORTHO05D007064 9.6e-176 620.2 320 95.6
MELO3C011838.2 Cucumis melo HOM05D005162 ORTHO05D007064 5.3e-174 614.4 320 95.0
CsaV3_5G029940 Cucumis sativus L. HOM05D005162 ORTHO05D007064 4.5e-173 611.3 320 94.1
Thecc.02G090800 Theobroma cacao HOM05D005162 ORTHO05D007064 6.5e-164 580.9 320 88.1
COL.COLO4_11752 Corchorus olitorius HOM05D005162 ORTHO05D007064 2.7e-162 575.5 321 87.2
Ciclev10001794m.g Citrus clementina HOM05D005162 ORTHO05D007064 7.9e-162 573.9 320 87.8
Atru.chr6.699 Acer truncatum HOM05D005162 ORTHO05D007064 3.9e-161 571.6 320 87.5
Gohir.A03G192500 Gossypium hirsutum HOM05D005162 ORTHO05D007064 3.9e-161 571.6 320 86.6
Gohir.D02G213500 Gossypium hirsutum HOM05D005162 ORTHO05D007064 1.1e-160 570.1 320 86.6
Gorai.005G241400 Gossypium raimondii HOM05D005162 ORTHO05D007064 1.1e-160 570.1 320 86.6
Duzib132G0282 Durio zibethinus HOM05D005162 ORTHO05D007064 2.5e-160 568.9 320 85.6
Manes.07G021300 Manihot esculenta HOM05D005162 ORTHO05D007064 2.5e-160 568.9 320 86.2
Peaxi162Scf00011g00742 Petunia axillaris HOM05D005162 ORTHO05D007064 7.4e-160 567.4 316 86.1
Aqoxy6G00135 Aquilegia oxysepala HOM05D005162 ORTHO05D007064 1.6e-159 566.2 320 85.9
Potri.004G219300 Populus trichocarpa HOM05D005162 ORTHO05D007064 6.3e-159 564.3 317 85.2
THA.LOC104803191 Tarenaya hassleriana HOM05D005162 ORTHO05D007064 8.2e-159 563.9 320 86.2
PGR042G0281 Punica granatum HOM05D005162 ORTHO05D007064 3.1e-158 562.0 316 85.1
Eucgr.G00398 Eucalyptus grandis HOM05D005162 ORTHO05D007064 4.1e-158 561.6 320 84.1
CiPaw.05G051000 Carya illinoinensis HOM05D005162 ORTHO05D007064 1.2e-157 560.1 319 84.6
arahy.Tifrunner.gnm1.ann1.R3RHS8 Arachis hypogaea HOM05D005162 ORTHO05D007064 1.5e-157 559.7 317 84.5
HPP92_001076 Vanilla planifolia HOM05D005162 ORTHO05D007064 3.4e-157 558.5 316 84.5
ECA234G0102 Erigeron canadensis HOM05D005162 ORTHO05D007064 4.5e-157 558.1 317 84.2
TAR376G0995 Trochodendron aralioides HOM05D005162 ORTHO05D007064 4.5e-157 558.1 316 85.1
arahy.Tifrunner.gnm1.ann1.3Y07W7 Arachis hypogaea HOM05D005162 ORTHO05D007064 7.7e-157 557.4 317 84.2
MSTRG.16505 Avicennia marina HOM05D005162 ORTHO05D007064 7.7e-157 557.4 316 84.8
HanXRQChr10g0294681 Helianthus annuus HOM05D005162 ORTHO05D007064 7.7e-157 557.4 316 84.8
DCAR_006685 Daucus carota HOM05D005162 ORTHO05D007064 3.8e-156 555.1 316 85.1
CANSAT54G0278 Cannabis sativa HOM05D005162 ORTHO05D007064 5.0e-156 554.7 321 84.1
Cc02_g22900 Coffea canephora HOM05D005162 ORTHO05D007064 1.1e-155 553.5 317 83.9
PSO170G6393 Papaver somniferum HOM05D005162 ORTHO05D007064 1.4e-155 553.1 319 83.4
QL02p099940 Quercus lobata HOM05D005162 ORTHO05D007064 1.9e-155 552.7 318 84.6
Nn5g27579 Nelumbo nucifera HOM05D005162 ORTHO05D007064 3.2e-155 552.0 320 83.4
Sc07g0004980 Simmondsia chinensis HOM05D005162 ORTHO05D007064 1.6e-154 549.7 317 83.9
AL6G41220 Arabidopsis lyrata HOM05D005162 ORTHO05D007064 4.6e-154 548.1 317 83.6
Lalb_Chr07g0185841 Lupinus albus HOM05D005162 ORTHO05D007064 4.6e-154 548.1 316 83.9
Prupe.1G576000 Prunus persica HOM05D005162 ORTHO05D007064 4.6e-154 548.1 317 83.9
Aa31LG3G14040 Aethionema arabicum HOM05D005162 ORTHO05D007064 7.9e-154 547.4 317 83.9
Cpa.g.sc38.29 Carica papaya HOM05D005162 ORTHO05D007064 1.0e-153 547.0 320 82.8
AT4G06599 Arabidopsis thaliana HOM05D005162 ORTHO05D007064 1.8e-153 546.2 317 83.3
Cfa005485 Carpinus fangiana HOM05D005162 ORTHO05D007064 1.8e-153 546.2 319 85.0
CSS0000837 Camellia sinensis var. sinensis HOM05D005162 ORTHO05D007064 3.0e-153 545.4 320 83.1
Sp7g16990 Schrenkiella parvula HOM05D005162 ORTHO05D007064 3.9e-153 545.0 316 83.2
SalBow8G3448 Salvia bowleyana HOM05D005162 ORTHO05D007064 5.1e-153 544.7 318 82.4
A01p20180 Brassica napus HOM05D005162 ORTHO05D007064 6.7e-153 544.3 316 82.9
BraA01t01942Z Brassica rapa HOM05D005162 ORTHO05D007064 8.8e-153 543.9 316 82.6
Carub.0006s2628 Capsella rubella HOM05D005162 ORTHO05D007064 8.8e-153 543.9 317 83.0
Ah.03g137150 Amaranthus hybridus HOM05D005162 ORTHO05D007064 1.1e-152 543.5 318 81.1
Lsat_1_v5_gn_5_105901 Lactuca sativa HOM05D005162 ORTHO05D007064 2.0e-152 542.7 316 83.5
Sabra01G0166400 Salix brachista HOM05D005162 ORTHO05D007064 4.3e-152 541.6 352 75.9
CARHR287310 Cardamine hirsuta HOM05D005162 ORTHO05D007064 5.7e-152 541.2 317 83.3
Thhalv10025663m.g Eutrema salsugineum HOM05D005162 ORTHO05D007064 7.4e-152 540.8 316 82.6
FAN18G1533 Fragaria x ananassa HOM05D005162 ORTHO05D007064 9.7e-152 540.4 318 81.4
BcaC09g50447 Brassica carinata HOM05D005162 ORTHO05D007064 1.3e-151 540.0 316 82.3
C01p25320 Brassica napus HOM05D005162 ORTHO05D007064 1.3e-151 540.0 316 82.3
RcHm_v2.0_Chr7g0220871 Rosa chinensis HOM05D005162 ORTHO05D007064 1.3e-151 540.0 317 81.7
FvH4_5g28710 Fragaria vesca HOM05D005162 ORTHO05D007064 2.8e-151 538.9 317 81.4
Rhsim11G0126200 Rhododendron simsii HOM05D005162 ORTHO05D007064 4.8e-151 538.1 360 74.2
VMungo0251G3523 Vigna mungo HOM05D005162 ORTHO05D007064 4.8e-151 538.1 316 81.3
Nitab4.5_0000948g0210 Nicotiana tabacum HOM05D005162 ORTHO05D007064 6.3e-151 537.7 357 75.6
FAN04G0484 Fragaria x ananassa HOM05D005162 ORTHO05D007064 8.2e-151 537.3 317 81.4
Sopen01g046230 Solanum pennellii HOM05D005162 ORTHO05D007064 1.1e-150 537.0 316 81.6
TWI59G0454 Tripterygium wilfordii HOM05D005162 ORTHO05D007064 1.1e-150 537.0 316 83.9
Phvul.002G248400 Phaseolus vulgaris HOM05D005162 ORTHO05D007064 1.4e-150 536.6 316 81.3
PGSC0003DMG400024901 Solanum tuberosum HOM05D005162 ORTHO05D007064 1.4e-150 536.6 316 81.6
BolC1t02482H Brassica oleracea HOM05D005162 ORTHO05D007064 2.4e-150 535.8 310 82.9
Glyma.05G168000 Glycine max HOM05D005162 ORTHO05D007064 3.1e-150 535.4 316 81.0
MD15G1431000 Malus domestica HOM05D005162 ORTHO05D007064 3.1e-150 535.4 317 82.0
Solyc01g103850.4 Solanum lycopersicum HOM05D005162 ORTHO05D007064 3.1e-150 535.4 307 83.4
Potri.003G011300 Populus trichocarpa HOM05D005162 ORTHO05D007064 4.5e-149 531.6 310 82.3
FAN08G0254 Fragaria x ananassa HOM05D005162 ORTHO05D007064 1.3e-148 530.0 330 78.5
Glyma.08G126400 Glycine max HOM05D005162 ORTHO05D007064 5.0e-148 528.1 316 80.1
Lj4g0017883 Lotus japonicus HOM05D005162 ORTHO05D007064 6.5e-148 527.7 316 80.1
Migut.B00805 Erythranthe guttata HOM05D005162 ORTHO05D007064 8.5e-148 527.3 318 80.8
Psat7g063440 Pisum sativum HOM05D005162 ORTHO05D007064 5.5e-147 524.6 321 80.1
Actinidia39017 Actinidia chinensis HOM05D005162 ORTHO05D007064 1.6e-146 523.1 320 81.6
TPR.G6800 Trifolium pratense HOM05D005162 ORTHO05D007064 1.6e-146 523.1 319 79.9
AUR62041110 Chenopodium quinoa HOM05D005162 ORTHO05D007064 2.7e-146 522.3 358 72.6
FAN13G0306 Fragaria x ananassa HOM05D005162 ORTHO05D007064 4.7e-146 521.5 330 77.9
Sabra03G0006800 Salix brachista HOM05D005162 ORTHO05D007064 6.1e-146 521.2 310 81.6
Sabra03G0007400 Salix brachista HOM05D005162 ORTHO05D007064 6.1e-146 521.2 310 81.6
Ca_17836_v3 Cicer arietinum L. HOM05D005162 ORTHO05D007064 1.4e-145 520.0 319 79.3
Medtr8g088640 Medicago truncatula HOM05D005162 ORTHO05D007064 2.3e-145 519.2 319 79.3
Haze_01819 Corylus avellana HOM05D005162 ORTHO05D007064 1.5e-144 516.5 385 70.9
unitig_749.g14130 Utricularia gibba HOM05D005162 ORTHO05D007064 3.3e-144 515.4 316 77.2
ATR1134G078 Amborella trichopoda HOM05D005162 ORTHO05D007064 1.7e-143 513.1 310 80.3
Dinv01848 Davidia involucrata HOM05D005162 ORTHO05D007064 2.2e-143 512.7 305 83.3
BcaNung03473 Brassica carinata HOM05D005162 ORTHO05D007064 2.8e-143 512.3 302 81.8
CSS0029208 Camellia sinensis var. sinensis HOM05D005162 ORTHO05D007064 9.1e-142 507.3 320 78.8
SGA_v2.0_scaffold338G49226 Striga asiatica HOM05D005162 ORTHO05D007064 3.8e-140 501.9 316 76.6
SMO358G0515 Selaginella moellendorffii HOM05D005162 ORTHO05D007064 7.4e-136 487.6 318 73.6
CDE08G1137 Ceratophyllum demersum HOM05D005162 ORTHO05D007064 1.3e-135 486.9 317 74.8
BcaNung00113 Brassica carinata HOM05D005162 ORTHO05D007064 8.2e-135 484.2 316 75.9
Nitab4.5_0002698g0020 Nicotiana tabacum HOM05D005162 ORTHO05D007064 7.0e-134 481.1 320 75.3
Os01g0875400 Oryza sativa ssp. japonica HOM05D005162 ORTHO05D007064 6.5e-132 474.6 319 71.8
Zm00001eb366430 Zea mays HOM05D005162 ORTHO05D007064 1.8e-129 466.5 320 70.0
Pp3c1_27970 Physcomitrium patens HOM05D005162 ORTHO05D007064 1.3e-124 450.3 325 67.4
Mapoly0019s0035 Marchantia polymorpha HOM05D005162 ORTHO05D007064 2.2e-124 449.5 309 71.2
GSVIVG01023290001 Vitis vinifera HOM05D005162 ORTHO05D007064 7.2e-123 444.5 247 87.0
CsaV3_5G029930 Cucumis sativus L. HOM05D005162 ORTHO05D007064 7.5e-120 434.5 305 73.4
Oeu032113.1 Olea europaea HOM05D005162 ORTHO05D007064 2.8e-119 432.6 247 83.8
HanXRQChr10g0294691 Helianthus annuus HOM05D005162 ORTHO05D007064 3.7e-119 432.2 249 83.1
vmacro01733 Vaccinium macrocarpon HOM05D005162 ORTHO05D007064 2.4e-118 429.5 247 81.8
Lj5C260G15 Lonicera japonica HOM05D005162 ORTHO05D007064 5.4e-118 428.3 242 83.5
MBI09_g07124_MAGBIO Magnolia biondii HOM05D005162 ORTHO05D007064 8.0e-114 414.5 320 67.5
Sabra03G0007100 Salix brachista HOM05D005162 ORTHO05D007064 1.5e-112 410.2 356 62.6
CDE08G1585 Ceratophyllum demersum HOM05D005162 ORTHO05D007064 9.8e-112 407.5 298 68.5
CAN.G798.38 Capsicum annuum HOM05D005162 ORTHO05D007064 2.9e-111 406.0 246 77.6
EL10Ac6g13975 Beta vulgaris HOM05D005162 ORTHO05D007064 3.2e-110 402.5 318 64.8
MCO16G506 Micromonas commoda HOM05D005162 ORTHO05D007064 1.8e-97 360.1 312 59.6
SEGI_09590 Sequoiadendron giganteum HOM05D005162 ORTHO05D007064 4.4e-88 328.9 204 78.4
BcaNung03475 Brassica carinata HOM05D005162 ORTHO05D007064 5.8e-88 328.6 232 69.8
Lsat_1_v5_gn_1_60880 Lactuca sativa HOM05D005162 ORTHO05D007064 6.6e-76 288.5 206 71.8
Haze_26359 Corylus avellana HOM05D005162 ORTHO05D007064 2.1e-69 266.9 326 45.1
Cre04.g228900 Chlamydomonas reinhardtii HOM05D005162 ORTHO05D007064 1.1e-67 261.2 263 51.0
CBR_g37945 Chara braunii HOM05D005162 ORTHO05D000497 2.5e-67 260.0 205 62.9
PRCOL_00006478 Prasinoderma coloniale HOM05D005162 ORTHO05D007064 2.6e-64 250.0 311 47.3
Hma1.2p1_1108F.1_g257830 Hydrangea macrophylla HOM05D005162 ORTHO05D007064 9.9e-64 248.1 136 84.6
Oeu049835.1 Olea europaea HOM05D005162 ORTHO05D007064 4.2e-62 242.7 135 83.7
AagrBONN_evm.TU.Sc2ySwM_368.1617 Anthoceros agrestis HOM05D005162 ORTHO05D007064 1.8e-57 227.3 226 52.7
EL10As26g24245 Beta vulgaris HOM05D005162 ORTHO05D007064 9.0e-57 224.9 128 81.2
FAN14G4428 Fragaria x ananassa HOM05D005162 ORTHO05D007064 2.6e-40 170.2 114 71.9
FvH4_6g22010 Fragaria vesca HOM05D005162 ORTHO05D007064 7.7e-40 168.7 114 71.1
FvH4_1g28920 Fragaria vesca HOM05D005162 ORTHO05D012874 1.4e-38 164.5 114 69.3
EL10Ac9g22557 Beta vulgaris HOM05D005162 ORTHO05D007064 2.5e-38 163.7 98 82.7
CBR_g37944 Chara braunii HOM05D000019 ORTHO05D000048 1.6e-37 161.0 162 51.9
FAN09G4282 Fragaria x ananassa HOM05D005162 ORTHO05D007064 3.6e-37 159.8 119 67.2
FAN06G2257 Fragaria x ananassa HOM05D005162 ORTHO05D007064 1.8e-36 157.5 107 70.1
FAN06G4878 Fragaria x ananassa HOM05D005162 ORTHO05D007064 1.8e-36 157.5 107 70.1
FvH4_7g16790 Fragaria vesca HOM05D005162 ORTHO05D007064 8.8e-36 155.2 107 69.2
MD08G1239400 Malus domestica HOM05D005162 ORTHO05D007064 4.3e-35 152.9 107 70.1
Lsat_1_v5_gn_1_60640 Lactuca sativa HOM05D005162 ORTHO05D007064 8.2e-34 148.7 199 47.2
BraA03t14123Z Brassica rapa HOM05D005162 ORTHO05D007064 1.8e-25 120.9 73 76.7
FvH4_7g16160 Fragaria vesca HOM05D005162 ORTHO05D007064 7.0e-25 119.0 77 74.0
Lsat_1_v5_gn_1_60800 Lactuca sativa HOM05D005162 ORTHO05D007064 5.0e-23 112.8 188 42.0
Haze_10322 Corylus avellana HOM05D002370 ORTHO05D003878 4.2e-22 109.8 67 85.1
Zm00001eb146120 Zea mays HOM05D005162 ORTHO05D007064 2.1e-21 107.5 80 63.8
C07p48650 Brassica napus HOM05D005162 ORTHO05D007064 4.0e-20 103.2 66 78.8
Solyc01g058590.1 Solanum lycopersicum HOM05D005162 ORTHO05D027610 5.2e-20 102.8 62 79.0
MD08G1239500 Malus domestica HOM05D005162 ORTHO05D007064 6.7e-20 102.4 61 82.0
Sopen01g024260 Solanum pennellii HOM05D005162 ORTHO05D027610 3.1e-17 93.6 71 64.8
BcaB01g02499 Brassica carinata HOM05D005162 ORTHO05D027610 5.3e-17 92.8 60 75.0
PRCOL_00002191 Prasinoderma coloniale HOM05D005162 ORTHO05D333607 1.7e-15 87.8 213 30.5
Cfa012958 Carpinus fangiana HOM05D005162 ORTHO05D027610 2.6e-11 73.9 40 85.0
BcaB05g22040 Brassica carinata HOM05D005162 ORTHO05D094949 1.7e-10 71.2 50 68.0
BcaB07g32185 Brassica carinata HOM05D005162 ORTHO05D000065 2.8e-10 70.5 51 62.7
CDE02G4559 Ceratophyllum demersum HOM05D000243 ORTHO05D000278 4.1e-09 66.6 54 63.0
LjContig00141g0011565 Lotus japonicus HOM05D005162 ORTHO05D236084 1.3e-07 61.6 60 58.3
SMO115G0039 Selaginella moellendorffii HOM05D005162 ORTHO05D376677 6.5e-07 59.3 177 27.7


User provided reference genes

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