Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0009934 Sechium edule HOM05D003979 ORTHO05D005530 0.0e+00 1220.7 621 100.0
CsaV3_3G011200 Cucumis sativus L. HOM05D003979 ORTHO05D005530 0.0e+00 1151.3 621 92.8
MELO3C006331.2 Cucumis melo HOM05D003979 ORTHO05D005530 0.0e+00 1148.7 622 92.9
ClCG05G003530 Citrullus lanatus HOM05D003979 ORTHO05D005530 0.0e+00 1148.3 621 92.8
Prupe.1G003100 Prunus persica HOM05D003979 ORTHO05D005530 6.5e-303 1043.5 617 84.6
Cfa014896 Carpinus fangiana HOM05D003979 ORTHO05D005530 1.2e-301 1039.3 623 84.3
CiPaw.02G067900 Carya illinoinensis HOM05D003979 ORTHO05D005530 1.1e-299 1032.7 622 84.1
MD04G1003600 Malus domestica HOM05D003979 ORTHO05D005530 2.0e-299 1031.9 630 82.7
Solyc12g043020.2 Solanum lycopersicum HOM05D003979 ORTHO05D005530 4.4e-299 1030.8 618 83.2
HanXRQChr14g0435331 Helianthus annuus HOM05D003979 ORTHO05D005530 9.7e-299 1029.6 626 83.1
Sopen12g022260 Solanum pennellii HOM05D003979 ORTHO05D005530 9.7e-299 1029.6 623 82.7
CANSAT78G1204 Cannabis sativa HOM05D003979 ORTHO05D005530 2.8e-298 1028.1 621 83.1
Potri.003G176600 Populus trichocarpa HOM05D003979 ORTHO05D005530 2.4e-297 1025.0 621 84.2
Actinidia34623 Actinidia chinensis HOM05D003979 ORTHO05D005530 6.9e-297 1023.5 627 82.3
Actinidia35951 Actinidia chinensis HOM05D003979 ORTHO05D005530 2.0e-296 1021.9 627 81.8
Ciclev10004565m.g Citrus clementina HOM05D003979 ORTHO05D005530 2.0e-296 1021.9 626 82.3
Dinv38268 Davidia involucrata HOM05D003979 ORTHO05D005530 1.0e-295 1019.6 623 82.3
Solyc05g053540.3 Solanum lycopersicum HOM05D003979 ORTHO05D005530 1.7e-295 1018.8 626 82.3
Sopen05g032060 Solanum pennellii HOM05D003979 ORTHO05D005530 1.7e-295 1018.8 626 82.3
PGSC0003DMG400019163 Solanum tuberosum HOM05D003979 ORTHO05D005530 3.8e-295 1017.7 619 82.6
Cc03_g07310 Coffea canephora HOM05D003979 ORTHO05D005530 6.5e-295 1016.9 622 81.2
CiPaw.01G125500 Carya illinoinensis HOM05D003979 ORTHO05D005530 2.5e-294 1015.0 623 82.3
Manes.15G050825 Manihot esculenta HOM05D003979 ORTHO05D005530 3.2e-294 1014.6 621 83.1
MSTRG.24631 Avicennia marina HOM05D003979 ORTHO05D005530 7.2e-294 1013.4 620 81.8
CSS0040719 Camellia sinensis var. sinensis HOM05D003979 ORTHO05D005530 7.2e-294 1013.4 622 80.1
Haze_11573 Corylus avellana HOM05D003979 ORTHO05D005530 7.2e-294 1013.4 658 79.2
Potri.001G051700 Populus trichocarpa HOM05D003979 ORTHO05D005530 7.2e-294 1013.4 621 82.3
CSS0027237 Camellia sinensis var. sinensis HOM05D003979 ORTHO05D005530 9.4e-294 1013.1 622 80.2
Hund24848 Selenicereus undatus HOM05D003979 ORTHO05D005530 2.1e-293 1011.9 582 85.1
RcHm_v2.0_Chr1g0328531 Rosa chinensis HOM05D003979 ORTHO05D005530 2.7e-293 1011.5 628 81.7
arahy.Tifrunner.gnm1.ann1.ZGF32Z Arachis hypogaea HOM05D003979 ORTHO05D005530 8.0e-293 1010.0 612 82.2
FvH4_7g04190 Fragaria vesca HOM05D003979 ORTHO05D005530 1.4e-292 1009.2 589 84.6
Cc02_g25590 Coffea canephora HOM05D003979 ORTHO05D005530 1.8e-292 1008.8 625 80.3
AUR62020350 Chenopodium quinoa HOM05D003979 ORTHO05D005530 2.3e-292 1008.4 604 82.8
Migut.N00344 Erythranthe guttata HOM05D003979 ORTHO05D005530 2.3e-292 1008.4 619 81.4
FAN06G4745 Fragaria x ananassa HOM05D003979 ORTHO05D005530 2.3e-292 1008.4 567 86.6
TAR365G0531 Trochodendron aralioides HOM05D003979 ORTHO05D005530 3.0e-292 1008.1 629 81.2
Hma1.2p1_0691F.1_g204250 Hydrangea macrophylla HOM05D003979 ORTHO05D005530 1.5e-291 1005.7 626 80.5
Duzib212G0229 Durio zibethinus HOM05D003979 ORTHO05D005530 2.0e-291 1005.4 581 85.5
HanXRQChr02g0059571 Helianthus annuus HOM05D003979 ORTHO05D005530 4.4e-291 1004.2 620 81.1
Gohir.D02G031700 Gossypium hirsutum HOM05D003979 ORTHO05D005530 9.7e-291 1003.0 614 81.8
Sabra01G0036200 Salix brachista HOM05D003979 ORTHO05D005530 1.3e-290 1002.7 621 82.1
AUR62015873 Chenopodium quinoa HOM05D003979 ORTHO05D005530 1.7e-290 1002.3 593 83.3
Lalb_Chr18g0056121 Lupinus albus HOM05D003979 ORTHO05D005530 6.3e-290 1000.3 562 85.9
Thecc.04G210300 Theobroma cacao HOM05D003979 ORTHO05D005530 6.3e-290 1000.3 581 84.7
FAN01G2046 Fragaria x ananassa HOM05D003979 ORTHO05D005530 8.2e-290 1000.0 576 84.7
Gorai.005G035200 Gossypium raimondii HOM05D003979 ORTHO05D005530 8.2e-290 1000.0 606 82.2
Duzib151G0303 Durio zibethinus HOM05D003979 ORTHO05D005530 1.4e-289 999.2 581 84.5
Medtr2g089340 Medicago truncatula HOM05D003979 ORTHO05D005530 1.4e-289 999.2 621 81.2
Phvul.006G152700 Phaseolus vulgaris HOM05D003979 ORTHO05D005530 1.8e-289 998.8 621 80.0
DCAR_031519 Daucus carota HOM05D003979 ORTHO05D005530 2.4e-289 998.4 629 80.8
Glyma.13G207900 Glycine max HOM05D003979 ORTHO05D005530 2.4e-289 998.4 621 80.4
VMungo0540G1831 Vigna mungo HOM05D003979 ORTHO05D005530 2.4e-289 998.4 621 80.5
Ca_00636_v3 Cicer arietinum L. HOM05D003979 ORTHO05D005530 3.1e-289 998.0 575 83.8
Ca_29705_v3 Cicer arietinum L. HOM05D003979 ORTHO05D005530 3.1e-289 998.0 575 83.8
COL.COLO4_20310 Corchorus olitorius HOM05D003979 ORTHO05D005530 3.1e-289 998.0 614 81.8
Psat1g182280 Pisum sativum HOM05D003979 ORTHO05D005530 3.1e-289 998.0 573 84.5
CAN.G765.2 Capsicum annuum HOM05D003979 ORTHO05D005530 5.3e-289 997.3 629 79.5
Lsat_1_v5_gn_6_63381 Lactuca sativa HOM05D003979 ORTHO05D005530 7.0e-289 996.9 623 80.7
FAN10G0585 Fragaria x ananassa HOM05D003979 ORTHO05D005530 1.2e-288 996.1 600 82.3
QL07p012465 Quercus lobata HOM05D003979 ORTHO05D005530 3.5e-288 994.6 623 80.7
Peaxi162Scf00073g02029 Petunia axillaris HOM05D003979 ORTHO05D005530 7.7e-288 993.4 613 80.8
PGR031G0232 Punica granatum HOM05D003979 ORTHO05D005530 2.9e-287 991.5 623 81.2
Gohir.A02G024400 Gossypium hirsutum HOM05D003979 ORTHO05D005530 5.0e-287 990.7 606 81.5
ECA233G3228 Erigeron canadensis HOM05D003979 ORTHO05D005530 1.1e-286 989.6 606 81.4
Ah.04g166150 Amaranthus hybridus HOM05D003979 ORTHO05D005530 1.5e-286 989.2 575 84.3
THA.LOC104808724 Tarenaya hassleriana HOM05D003979 ORTHO05D005530 3.2e-286 988.0 621 80.4
Sc25g0005860 Simmondsia chinensis HOM05D003979 ORTHO05D005530 1.2e-285 986.1 573 84.6
Lj6g0025731 Lotus japonicus HOM05D003979 ORTHO05D005530 2.7e-285 984.9 605 79.7
Nn1g03146 Nelumbo nucifera HOM05D003979 ORTHO05D005530 4.7e-285 984.2 628 79.1
PSO017G0981 Papaver somniferum HOM05D003979 ORTHO05D005530 8.0e-285 983.4 622 78.9
Aa31LG8G10930 Aethionema arabicum HOM05D003979 ORTHO05D005530 1.0e-284 983.0 614 82.1
THA.LOC104804817 Tarenaya hassleriana HOM05D003979 ORTHO05D005530 3.0e-284 981.5 621 79.9
Carub.0003s2458 Capsella rubella HOM05D003979 ORTHO05D005530 5.2e-284 980.7 621 79.9
BcaB04g20393 Brassica carinata HOM05D003979 ORTHO05D005530 6.7e-284 980.3 615 81.0
CARHR100330 Cardamine hirsuta HOM05D003979 ORTHO05D005530 6.7e-284 980.3 614 81.1
AT3G23940 Arabidopsis thaliana HOM05D003979 ORTHO05D005530 8.8e-284 979.9 621 79.9
C01p39410 Brassica napus HOM05D003979 ORTHO05D005530 1.2e-283 979.5 614 80.9
BolC1t03890H Brassica oleracea HOM05D003979 ORTHO05D005530 1.2e-283 979.5 614 80.9
Zm00001eb039310 Zea mays HOM05D003979 ORTHO05D005530 3.3e-283 978.0 558 85.1
Zm00001eb175970 Zea mays HOM05D003979 ORTHO05D005530 3.3e-283 978.0 593 81.8
AL3G39610 Arabidopsis lyrata HOM05D003979 ORTHO05D005530 4.4e-283 977.6 615 80.7
A07p08130 Brassica napus HOM05D003979 ORTHO05D005530 4.4e-283 977.6 614 80.9
BraA07t28596Z Brassica rapa HOM05D003979 ORTHO05D005530 4.4e-283 977.6 614 80.9
PSO063G3024 Papaver somniferum HOM05D003979 ORTHO05D005530 4.4e-283 977.6 629 78.4
EL10Ac4g07703 Beta vulgaris HOM05D003979 ORTHO05D005530 7.5e-283 976.9 625 77.9
Thhalv10002451m.g Eutrema salsugineum HOM05D003979 ORTHO05D005530 7.5e-283 976.9 613 80.8
Cpa.g.sc59.101 Carica papaya HOM05D003979 ORTHO05D005530 2.8e-282 974.9 599 81.8
Duzib268G0146 Durio zibethinus HOM05D003979 ORTHO05D005530 2.8e-282 974.9 617 79.7
BcaB06g26604 Brassica carinata HOM05D003979 ORTHO05D005530 3.7e-282 974.5 618 80.4
Os08g0559600 Oryza sativa ssp. japonica HOM05D003979 ORTHO05D005530 3.7e-282 974.5 558 84.9
TAR624G0299 Trochodendron aralioides HOM05D003979 ORTHO05D005530 3.7e-282 974.5 610 81.0
BcaC06g35668 Brassica carinata HOM05D003979 ORTHO05D005530 8.2e-282 973.4 614 80.6
C07p12270 Brassica napus HOM05D003979 ORTHO05D005530 8.2e-282 973.4 614 80.6
BraA01t03222Z Brassica rapa HOM05D003979 ORTHO05D005530 4.1e-281 971.1 614 80.6
Sp3g22010 Schrenkiella parvula HOM05D003979 ORTHO05D005530 7.0e-281 970.3 620 79.8
A01p30940 Brassica napus HOM05D003979 ORTHO05D005530 9.1e-281 969.9 614 80.0
arahy.Tifrunner.gnm1.ann1.NX1XST Arachis hypogaea HOM05D003979 ORTHO05D005530 2.2e-279 965.3 597 80.6
ATR0787G169 Amborella trichopoda HOM05D003979 ORTHO05D005530 8.5e-279 963.4 597 80.1
RhsimUnG0135800 Rhododendron simsii HOM05D003979 ORTHO05D005530 8.5e-279 963.4 609 79.1
BolC7t41694H Brassica oleracea HOM05D003979 ORTHO05D005530 1.9e-278 962.2 628 78.7
MBI07_g21060_MAGBIO Magnolia biondii HOM05D003979 ORTHO05D005530 2.5e-278 961.8 638 76.6
Aqoxy2G03779 Aquilegia oxysepala HOM05D003979 ORTHO05D005530 4.2e-278 961.1 587 80.6
Nitab4.5_0001769g0010 Nicotiana tabacum HOM05D003979 ORTHO05D005530 1.2e-277 959.5 569 83.5
Oeu022336.1 Olea europaea HOM05D003979 ORTHO05D005530 2.7e-277 958.4 643 76.8
Aqoxy5G02610 Aquilegia oxysepala HOM05D003979 ORTHO05D005530 1.2e-275 953.0 624 77.4
GSVIVG01029073001 Vitis vinifera HOM05D003979 ORTHO05D005530 2.4e-273 945.3 527 87.5
RhsimUnG0180900 Rhododendron simsii HOM05D003979 ORTHO05D005530 2.0e-272 942.2 653 73.8
AUR62017196 Chenopodium quinoa HOM05D003979 ORTHO05D005530 2.7e-272 941.8 643 73.9
Pp3c11_18700 Physcomitrium patens HOM05D003979 ORTHO05D005530 3.5e-272 941.4 619 74.8
Hund11465 Selenicereus undatus HOM05D003979 ORTHO05D005530 1.0e-271 939.9 562 81.3
SMO361G0245 Selaginella moellendorffii HOM05D003979 ORTHO05D005530 2.0e-267 925.6 587 77.7
Mapoly0044s0128 Marchantia polymorpha HOM05D003979 ORTHO05D005530 1.7e-266 922.5 600 75.0
Peaxi162Scf00536g00915 Petunia axillaris HOM05D003979 ORTHO05D005530 1.8e-265 919.1 574 80.3
AUR62010687 Chenopodium quinoa HOM05D003979 ORTHO05D005530 1.0e-260 903.3 627 72.7
Gohir.D10G144500 Gossypium hirsutum HOM05D003979 ORTHO05D005530 1.0e-260 903.3 570 80.4
Nitab4.5_0001066g0080 Nicotiana tabacum HOM05D003979 ORTHO05D005530 4.4e-259 897.9 576 78.8
CBR_g16971 Chara braunii HOM05D003979 ORTHO05D005530 4.1e-257 891.3 579 75.8
SGA_v2.0_scaffold31G12595 Striga asiatica HOM05D003979 ORTHO05D005530 2.0e-256 889.0 539 81.4
HPP92_025762 Vanilla planifolia HOM05D003979 ORTHO05D005530 1.3e-250 869.8 527 80.3
Lj6C614G9 Lonicera japonica HOM05D003979 ORTHO05D005530 1.6e-248 862.8 614 72.8
TWI09G0393 Tripterygium wilfordii HOM05D003979 ORTHO05D005530 5.2e-244 847.8 627 70.2
Gorai.011G161400 Gossypium raimondii HOM05D003979 ORTHO05D005530 4.3e-238 828.2 626 70.3
Cre03.g206600 Chlamydomonas reinhardtii HOM05D003979 ORTHO05D005530 5.2e-236 821.2 577 70.2
MCO11G076 Micromonas commoda HOM05D003979 ORTHO05D005530 1.4e-233 813.1 566 69.4
AagrBONN_evm.TU.Sc2ySwM_228.3337 Anthoceros agrestis HOM05D003979 ORTHO05D005530 2.6e-227 792.3 495 78.4
SMO361G0819 Selaginella moellendorffii HOM05D003979 ORTHO05D005530 4.4e-227 791.6 489 79.8
unitig_899.g15534 Utricularia gibba HOM05D003979 ORTHO05D005530 3.5e-224 781.9 490 80.8
PRCOL_00005867 Prasinoderma coloniale HOM05D003979 ORTHO05D005530 7.6e-219 764.2 545 68.3
QL06p023475 Quercus lobata HOM05D003979 ORTHO05D005530 2.9e-218 762.3 491 78.6
CDE04G1626 Ceratophyllum demersum HOM05D003979 ORTHO05D005530 4.2e-217 758.4 433 85.5
Gohir.A10G121600 Gossypium hirsutum HOM05D003979 ORTHO05D005530 1.1e-212 743.8 426 85.2
HPP92_025735 Vanilla planifolia HOM05D003979 ORTHO05D005530 2.5e-209 732.6 490 76.3
SEGI_04002 Sequoiadendron giganteum HOM05D003979 ORTHO05D005530 3.0e-207 725.7 433 80.4
HPP92_025731 Vanilla planifolia HOM05D003979 ORTHO05D005530 3.8e-202 708.8 422 82.0
Cfa024863 Carpinus fangiana HOM05D003979 ORTHO05D005530 1.5e-198 696.8 573 60.6
vmacro00507 Vaccinium macrocarpon HOM05D003979 ORTHO05D005530 2.8e-189 666.0 403 81.9
Atru.chr4.1774 Acer truncatum HOM05D003979 ORTHO05D005530 2.6e-174 616.3 433 73.7
Cfa023757 Carpinus fangiana HOM05D003979 ORTHO05D005530 5.3e-164 582.0 604 50.8
Eucgr.H02826 Eucalyptus grandis HOM05D003979 ORTHO05D005530 5.2e-159 565.5 312 90.1
QL07p030448 Quercus lobata HOM05D003979 ORTHO05D000106 3.7e-149 532.7 384 73.4
Eucgr.C02488 Eucalyptus grandis HOM05D003979 ORTHO05D005530 4.0e-127 459.5 340 72.6
HanXRQChr14g0435341 Helianthus annuus HOM05D003979 ORTHO05D005530 7.1e-124 448.7 296 78.7
Manes.03G150102 Manihot esculenta HOM05D003979 ORTHO05D005530 6.2e-104 382.5 277 68.2
TPR.G30672 Trifolium pratense HOM05D003979 ORTHO05D005530 4.2e-92 343.2 216 76.9
CAN.G12.22 Capsicum annuum HOM05D003979 ORTHO05D005530 5.9e-78 296.2 205 74.6
vmacro00506 Vaccinium macrocarpon HOM05D003979 ORTHO05D005530 3.6e-75 287.0 156 87.8
Cfa023448 Carpinus fangiana HOM05D003979 ORTHO05D123299 3.0e-74 283.9 557 33.8
Eucgr.H02825 Eucalyptus grandis HOM05D003979 ORTHO05D015566 6.1e-67 259.6 150 82.0
Cfa020039 Carpinus fangiana HOM05D003979 ORTHO05D015566 2.1e-59 234.6 131 85.5
Duzib268G0265 Durio zibethinus HOM05D003979 ORTHO05D015566 4.4e-57 226.9 133 79.7
QL07p012436 Quercus lobata HOM05D003979 ORTHO05D005530 4.1e-55 220.3 126 84.1
THA.LOC104809102 Tarenaya hassleriana HOM05D003979 ORTHO05D049433 2.2e-53 214.5 116 94.0
Oeu022341.1 Olea europaea HOM05D003979 ORTHO05D049433 2.1e-51 208.0 178 64.6
PGSC0003DMG400028636 Solanum tuberosum HOM05D003979 ORTHO05D015566 1.2e-49 202.2 115 84.3
Lsat_1_v5_gn_4_162440 Lactuca sativa HOM05D003979 ORTHO05D015566 5.7e-49 199.9 109 87.2
QL06p023466 Quercus lobata HOM05D003979 ORTHO05D015566 9.8e-49 199.1 114 79.8
Gohir.D02G124900 Gossypium hirsutum HOM05D003979 ORTHO05D005530 2.2e-45 188.0 105 81.9
Gorai.005G140500 Gossypium raimondii HOM05D003979 ORTHO05D005530 2.9e-45 187.6 152 63.8
Eucgr.C02482 Eucalyptus grandis HOM05D003979 ORTHO05D015566 4.2e-44 183.7 115 75.7
Oeu006718.2 Olea europaea HOM05D003979 ORTHO05D005530 6.8e-42 176.4 249 46.6
CDE04G0146 Ceratophyllum demersum HOM05D003979 ORTHO05D005530 1.1e-39 169.1 157 59.9
TPR.G30661 Trifolium pratense HOM05D003979 ORTHO05D005530 8.6e-37 159.5 191 49.7
TWI36G0080 Tripterygium wilfordii HOM05D003979 ORTHO05D005530 3.0e-34 151.0 153 57.5
Lsat_1_v5_gn_5_133441 Lactuca sativa HOM05D003979 ORTHO05D015566 6.2e-27 126.7 112 62.5
CAN.G12.20 Capsicum annuum HOM05D003979 ORTHO05D015566 1.2e-25 122.5 70 81.4
CAN.G12.21 Capsicum annuum HOM05D003979 ORTHO05D015566 7.5e-25 119.8 60 91.7
SMO361G0618 Selaginella moellendorffii HOM05D003979 ORTHO05D015566 5.0e-21 107.1 212 34.9
TPR.G35859 Trifolium pratense HOM05D003979 ORTHO05D015566 1.1e-20 105.9 56 91.1
Aqoxy226s001 Aquilegia oxysepala HOM05D004107 ORTHO05D004738 5.8e-17 93.6 180 31.1
HPP92_025734 Vanilla planifolia HOM05D003979 ORTHO05D005530 1.1e-15 89.4 92 56.5
unitig_899.g15535 Utricularia gibba HOM05D003979 ORTHO05D005530 2.8e-11 74.7 98 56.1
TAR362G1054 Trochodendron aralioides HOM05D000447 ORTHO05D000315 1.1e-10 72.8 66 48.5


User provided reference genes

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