Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0009329 Sechium edule HOM05D005304 ORTHO05D004438 3.8e-62 241.5 138 100.0
ClCG05G021460 Citrullus lanatus HOM05D005304 ORTHO05D004438 3.4e-42 175.3 138 68.8
CsaV3_5G035790 Cucumis sativus L. HOM05D005304 ORTHO05D004438 2.8e-41 172.2 143 65.7
MELO3C012381.2 Cucumis melo HOM05D005304 ORTHO05D004438 6.3e-41 171.0 140 66.4
Sed0006013 Sechium edule HOM05D005304 ORTHO05D004438 7.2e-37 157.5 136 64.0
CiPaw.01G264700 Carya illinoinensis HOM05D005304 ORTHO05D004438 6.6e-14 81.3 73 49.3
Potri.010G231600 Populus trichocarpa HOM05D005304 ORTHO05D004438 8.6e-14 80.9 119 39.5
Manes.07G093500 Manihot esculenta HOM05D005304 ORTHO05D004438 3.3e-13 79.0 128 39.8
QL08p052941 Quercus lobata HOM05D005304 ORTHO05D004438 3.3e-13 79.0 73 52.1
Cfa001771 Carpinus fangiana HOM05D005304 ORTHO05D004438 4.7e-12 75.1 73 49.3
Potri.008G029600 Populus trichocarpa HOM05D005304 ORTHO05D004438 6.2e-12 74.7 56 62.5
Sabra10G0179600 Salix brachista HOM05D005304 ORTHO05D004438 1.1e-11 73.9 119 37.8
QL03p021677 Quercus lobata HOM05D005304 ORTHO05D004438 1.4e-11 73.6 73 47.9
Manes.10G053200 Manihot esculenta HOM05D005304 ORTHO05D004438 6.8e-11 71.2 132 40.2
QL03p011649 Quercus lobata HOM05D005304 ORTHO05D004438 6.8e-11 71.2 73 46.6
Haze_16785 Corylus avellana HOM05D005304 ORTHO05D004438 2.0e-10 69.7 74 44.6
Duzib114G0655 Durio zibethinus HOM05D005304 ORTHO05D004438 2.0e-10 69.7 56 60.7
Duzib128G0830 Durio zibethinus HOM05D005304 ORTHO05D004438 2.0e-10 69.7 120 38.3
PGR044G1405 Punica granatum HOM05D005304 ORTHO05D004438 2.0e-10 69.7 117 37.6
TAR623G1332 Trochodendron aralioides HOM05D005304 ORTHO05D004438 2.0e-10 69.7 70 50.0
TAR633G0523 Trochodendron aralioides HOM05D005304 ORTHO05D004438 2.0e-10 69.7 56 53.6
CiPaw.02G169800 Carya illinoinensis HOM05D005304 ORTHO05D004438 2.6e-10 69.3 74 43.2
Lsat_1_v5_gn_8_22700 Lactuca sativa HOM05D005304 ORTHO05D004438 2.6e-10 69.3 121 30.6
Sabra08G0019800 Salix brachista HOM05D005304 ORTHO05D004438 2.6e-10 69.3 56 57.1
Thecc.10G090600 Theobroma cacao HOM05D005304 ORTHO05D004438 2.6e-10 69.3 125 40.0
CsaV3_2G032750 Cucumis sativus L. HOM05D005304 ORTHO05D004438 5.8e-10 68.2 135 36.3
Nn6g35176 Nelumbo nucifera HOM05D005304 ORTHO05D004438 7.5e-10 67.8 116 36.2
ClCG08G007940 Citrullus lanatus HOM05D005304 ORTHO05D004438 9.8e-10 67.4 135 34.1
MELO3C019852.2 Cucumis melo HOM05D005304 ORTHO05D004438 1.3e-09 67.0 135 35.6
Sed0018085 Sechium edule HOM05D005304 ORTHO05D004438 1.3e-09 67.0 77 48.1
CSS0003867 Camellia sinensis var. sinensis HOM05D017072 ORTHO05D004438 1.7e-09 66.6 59 55.9
Duzib128G0918 Durio zibethinus HOM05D005304 ORTHO05D004438 4.9e-09 65.1 56 58.9
COL.COLO4_32872 Corchorus olitorius HOM05D005304 ORTHO05D004438 6.4e-09 64.7 119 37.8
Nn2g13894 Nelumbo nucifera HOM05D005304 ORTHO05D004438 6.4e-09 64.7 138 31.2
Oeu059829.1 Olea europaea HOM05D005304 ORTHO05D004438 6.4e-09 64.7 120 30.8
TAR369G0323 Trochodendron aralioides HOM05D001401 ORTHO05D002222 6.4e-09 64.7 56 53.6
TAR636G3524 Trochodendron aralioides HOM05D005304 ORTHO05D004438 8.3e-09 64.3 56 48.2
FvH4_7g06790 Fragaria vesca HOM05D005304 ORTHO05D004438 1.9e-08 63.2 118 33.9
FAN06G1004 Fragaria x ananassa HOM05D005304 ORTHO05D004438 1.9e-08 63.2 118 33.9
FAN10G3090 Fragaria x ananassa HOM05D005304 ORTHO05D004438 1.9e-08 63.2 118 33.9
Gohir.A05G393600 Gossypium hirsutum HOM05D005304 ORTHO05D004438 1.9e-08 63.2 58 50.0
Rhsim03G0110900 Rhododendron simsii HOM05D005304 ORTHO05D004438 2.4e-08 62.8 53 58.5
SalBow4G2705 Salvia bowleyana HOM05D005304 ORTHO05D004438 2.4e-08 62.8 48 58.3
TWI38G0392 Tripterygium wilfordii HOM05D005304 ORTHO05D004438 2.4e-08 62.8 65 47.7
FAN03G1417 Fragaria x ananassa HOM05D005304 ORTHO05D004438 4.1e-08 62.0 55 52.7
FAN10G0320 Fragaria x ananassa HOM05D005304 ORTHO05D004438 4.1e-08 62.0 114 35.1
Gohir.D04G021300 Gossypium hirsutum HOM05D005304 ORTHO05D004438 5.4e-08 61.6 58 50.0
Gorai.012G025400 Gossypium raimondii HOM05D005304 ORTHO05D004438 5.4e-08 61.6 58 50.0
Lsat_1_v5_gn_9_70641 Lactuca sativa HOM05D005304 ORTHO05D004438 5.4e-08 61.6 125 32.8
Cc02_g10500 Coffea canephora HOM05D005304 ORTHO05D004438 7.1e-08 61.2 115 36.5
Oeu032435.1 Olea europaea HOM05D005304 ORTHO05D004438 7.1e-08 61.2 62 46.8
Sed0010031 Sechium edule HOM05D005304 ORTHO05D004438 7.1e-08 61.2 58 50.0
RcHm_v2.0_Chr1g0336411 Rosa chinensis HOM05D005304 ORTHO05D004438 9.2e-08 60.8 55 50.9
TWI63G0695 Tripterygium wilfordii HOM05D005304 ORTHO05D004438 9.2e-08 60.8 128 36.7
FAN12G4274 Fragaria x ananassa HOM05D005304 ORTHO05D004438 1.2e-07 60.5 114 35.1
Gohir.A01G128800 Gossypium hirsutum HOM05D005304 ORTHO05D004438 1.2e-07 60.5 58 50.0
TPR.G37843 Trifolium pratense HOM05D005304 ORTHO05D004438 1.6e-07 60.1 56 50.0
Atru.chr12.921 Acer truncatum HOM05D005304 ORTHO05D004438 2.1e-07 59.7 73 49.3
Manes.10G053300 Manihot esculenta HOM05D005304 ORTHO05D004438 2.1e-07 59.7 74 48.6
Psat6g173960 Pisum sativum HOM05D005304 ORTHO05D004438 2.1e-07 59.7 56 48.2
CANSAT56G0274 Cannabis sativa HOM05D005304 ORTHO05D004438 2.7e-07 59.3 53 49.1
Gohir.D01G118400 Gossypium hirsutum HOM05D005304 ORTHO05D004438 2.7e-07 59.3 58 50.0
Gorai.002G144400 Gossypium raimondii HOM05D005304 ORTHO05D004438 2.7e-07 59.3 58 50.0
Prupe.2G095100 Prunus persica HOM05D005304 ORTHO05D004438 3.5e-07 58.9 74 44.6
Ca_10460_v3 Cicer arietinum L. HOM05D005304 ORTHO05D004438 4.6e-07 58.5 56 46.4
Gohir.A05G290700 Gossypium hirsutum HOM05D005304 ORTHO05D004438 4.6e-07 58.5 66 48.5
VMungo0720G0262 Vigna mungo HOM05D005304 ORTHO05D004438 4.6e-07 58.5 56 44.6
FAN01G2164 Fragaria x ananassa HOM05D005304 ORTHO05D004438 6.0e-07 58.2 55 50.9
FAN02G4580 Fragaria x ananassa HOM05D005304 ORTHO05D004438 6.0e-07 58.2 114 34.2
Phvul.007G141600 Phaseolus vulgaris HOM05D005304 ORTHO05D004438 6.0e-07 58.2 56 44.6
Potri.010G231700 Populus trichocarpa HOM05D005304 ORTHO05D004438 6.0e-07 58.2 54 50.0
Gohir.D05G291900 Gossypium hirsutum HOM05D005304 ORTHO05D004438 1.3e-06 57.0 65 50.8
Lj5g0009089 Lotus japonicus HOM05D005304 ORTHO05D004438 1.3e-06 57.0 56 46.4
Medtr1g090837 Medicago truncatula HOM05D005304 ORTHO05D004438 1.3e-06 57.0 56 46.4
CSS0034177 Camellia sinensis var. sinensis HOM05D005304 ORTHO05D004438 1.7e-06 56.6 63 46.0
MSTRG.27507 Avicennia marina HOM05D005304 ORTHO05D004438 2.3e-06 56.2 66 45.5
Cpa.g.sc128.74 Carica papaya HOM05D005304 ORTHO05D004438 2.3e-06 56.2 54 55.6
Duzib168G0406 Durio zibethinus HOM05D005304 ORTHO05D004438 2.3e-06 56.2 66 39.4
Solyc03g071710.1 Solanum lycopersicum HOM05D005304 ORTHO05D004438 2.3e-06 56.2 58 44.8
Sopen03g019970 Solanum pennellii HOM05D005304 ORTHO05D004438 2.3e-06 56.2 58 44.8
PGSC0003DMG400016914 Solanum tuberosum HOM05D005304 ORTHO05D004438 2.3e-06 56.2 58 44.8
CAN.G612.11 Capsicum annuum HOM05D005304 ORTHO05D004438 3.0e-06 55.8 58 44.8
Glyma.10G199500 Glycine max HOM05D005304 ORTHO05D004438 3.0e-06 55.8 56 46.4
Gorai.009G307700 Gossypium raimondii HOM05D005304 ORTHO05D004438 3.0e-06 55.8 72 48.6
Lalb_Chr02g0151151 Lupinus albus HOM05D005304 ORTHO05D004438 3.0e-06 55.8 56 46.4
Lalb_Chr06g0170051 Lupinus albus HOM05D005304 ORTHO05D004438 3.0e-06 55.8 56 46.4
DCAR_019059 Daucus carota HOM05D005304 ORTHO05D004438 3.9e-06 55.5 55 50.9
Glyma.20G190800 Glycine max HOM05D005304 ORTHO05D004438 3.9e-06 55.5 56 46.4
Lalb_Chr03g0036331 Lupinus albus HOM05D005304 ORTHO05D004438 3.9e-06 55.5 119 35.3
CSS0028161 Camellia sinensis var. sinensis HOM05D005304 ORTHO05D004438 5.1e-06 55.1 66 43.9
Potri.009G003400 Populus trichocarpa HOM05D005304 ORTHO05D004438 5.1e-06 55.1 64 43.8
Aqoxy2G01602 Aquilegia oxysepala HOM05D005304 ORTHO05D004438 6.6e-06 54.7 64 42.2
SHI54636 Sapria himalayana HOM05D005304 ORTHO05D004438 6.6e-06 54.7 53 43.4
Thecc.09G296200 Theobroma cacao HOM05D005304 ORTHO05D004438 6.6e-06 54.7 56 41.1
Duzib150G0717 Durio zibethinus HOM05D005304 ORTHO05D004438 8.6e-06 54.3 56 41.1
PGR044G0041 Punica granatum HOM05D005304 ORTHO05D004438 8.6e-06 54.3 51 54.9


User provided reference genes

Program Settings