Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0008589 Sechium edule HOM05D000475 ORTHO05D011666 8.3e-65 251.5 170 100.0
arahy.Tifrunner.gnm1.ann1.PI8N4R Arachis hypogaea HOM05D000475 ORTHO05D000343 4.6e-23 112.8 95 53.7
Lj1A962T107 Lonicera japonica HOM05D000475 ORTHO05D000343 1.3e-22 111.3 122 50.8
ClCG11G005960 Citrullus lanatus HOM05D000475 ORTHO05D000343 3.0e-22 110.2 78 75.6
Migut.L02045 Erythranthe guttata HOM05D000475 ORTHO05D000343 4.3e-21 106.3 124 44.4
MELO3C008322.2 Cucumis melo HOM05D000475 ORTHO05D000343 5.6e-21 105.9 118 50.0
Lj2g0010150 Lotus japonicus HOM05D000475 ORTHO05D000343 5.6e-21 105.9 121 45.5
TWI38G2109 Tripterygium wilfordii HOM05D000475 ORTHO05D000343 8.2e-20 102.1 104 47.1
THA.LOC104816526 Tarenaya hassleriana HOM05D000475 ORTHO05D000343 2.4e-19 100.5 113 41.6
arahy.Tifrunner.gnm1.ann1.VSZX8Y Arachis hypogaea HOM05D000475 ORTHO05D000343 3.1e-19 100.1 123 45.5
Eucgr.G03101 Eucalyptus grandis HOM05D000475 ORTHO05D011666 9.0e-19 98.6 93 52.7
Ca_07698_v3 Cicer arietinum L. HOM05D000475 ORTHO05D000343 2.6e-18 97.1 121 43.0
Aqoxy3G02479 Aquilegia oxysepala HOM05D000475 ORTHO05D000343 3.4e-18 96.7 98 50.0
QL05p049129 Quercus lobata HOM05D000475 ORTHO05D000343 3.4e-18 96.7 95 50.5
Haze_17294 Corylus avellana HOM05D000475 ORTHO05D000343 4.5e-18 96.3 123 43.1
Rhsim03G0110100 Rhododendron simsii HOM05D000475 ORTHO05D011666 2.2e-17 94.0 105 42.9
COL.COLO4_24866 Corchorus olitorius HOM05D000475 ORTHO05D000343 3.8e-17 93.2 96 44.8
CAN.G1328.7 Capsicum annuum HOM05D003810 ORTHO05D004416 4.9e-17 92.8 92 47.8
DCAR_018667 Daucus carota HOM05D000475 ORTHO05D000343 1.4e-16 91.3 128 39.1
Peaxi162Scf00264g00858 Petunia axillaris HOM05D000001 ORTHO05D000003 1.4e-16 91.3 91 48.4
Peaxi162Scf00284g00231 Petunia axillaris HOM05D000475 ORTHO05D000343 2.5e-16 90.5 140 40.0
TPR.G35832 Trifolium pratense HOM05D000475 ORTHO05D000343 2.5e-16 90.5 121 36.4
Psat3g124320 Pisum sativum HOM05D000475 ORTHO05D000343 3.2e-16 90.1 118 39.8
CAN.G289.45 Capsicum annuum HOM05D002177 ORTHO05D004416 5.5e-16 89.4 89 49.4
Peaxi162Scf00009g01231 Petunia axillaris HOM05D000475 ORTHO05D000343 7.1e-16 89.0 122 41.0
TPR.G4429 Trifolium pratense HOM05D000475 ORTHO05D000343 7.1e-16 89.0 123 35.8
Nitab4.5_0000047g0200 Nicotiana tabacum HOM05D000475 ORTHO05D000343 1.6e-15 87.8 120 40.0
RcHm_v2.0_Chr3g0461581 Rosa chinensis HOM05D000475 ORTHO05D000343 6.0e-15 85.9 122 42.6
Nitab4.5_0001106g0120 Nicotiana tabacum HOM05D000475 ORTHO05D000343 1.0e-14 85.1 117 43.6
Lalb_Chr07g0191001 Lupinus albus HOM05D000475 ORTHO05D011666 3.0e-14 83.6 121 38.8
CAN.G6.22 Capsicum annuum HOM05D000475 ORTHO05D011666 6.7e-14 82.4 93 41.9
Os01g0165200 Oryza sativa ssp. japonica HOM05D000475 ORTHO05D000343 6.7e-14 82.4 95 38.9
TWI63G0323 Tripterygium wilfordii HOM05D000475 ORTHO05D000343 8.7e-14 82.0 106 40.6
arahy.Tifrunner.gnm1.ann1.BL5G13 Arachis hypogaea HOM05D000475 ORTHO05D000343 1.5e-13 81.3 110 38.2
Phvul.010G010600 Phaseolus vulgaris HOM05D000475 ORTHO05D011666 1.5e-13 81.3 77 48.1
ECA238G4627 Erigeron canadensis HOM05D000475 ORTHO05D000343 2.5e-13 80.5 105 43.8
AL6G10390 Arabidopsis lyrata HOM05D000475 ORTHO05D000343 4.3e-13 79.7 122 37.7
AT5G01660 Arabidopsis thaliana HOM05D000475 ORTHO05D000343 5.7e-13 79.3 124 37.1
Medtr7g070320 Medicago truncatula HOM05D000475 ORTHO05D000343 5.7e-13 79.3 93 46.2
CAN.G1225.6 Capsicum annuum HOM05D000475 ORTHO05D000343 7.4e-13 79.0 93 43.0
CAN.G629.5 Capsicum annuum HOM05D000475 ORTHO05D000343 1.6e-12 77.8 93 44.1
Thecc.05G006500 Theobroma cacao HOM05D000475 ORTHO05D000343 1.6e-12 77.8 118 36.4
Sp6g40920 Schrenkiella parvula HOM05D000475 ORTHO05D000343 2.8e-12 77.0 112 37.5
CARHR212020 Cardamine hirsuta HOM05D000475 ORTHO05D000343 4.8e-12 76.3 106 38.7
C09p74700 Brassica napus HOM05D000475 ORTHO05D000343 8.2e-12 75.5 97 40.2
Solyc10g076330.3 Solanum lycopersicum HOM05D000475 ORTHO05D000343 8.2e-12 75.5 93 37.6
BcaNung03297 Brassica carinata HOM05D000475 ORTHO05D000343 1.1e-11 75.1 97 39.2
BolC9t60202H Brassica oleracea HOM05D000475 ORTHO05D000343 1.1e-11 75.1 97 39.2
Thhalv10012920m.g Eutrema salsugineum HOM05D000475 ORTHO05D000343 1.4e-11 74.7 128 35.9
BcaC06g31955 Brassica carinata HOM05D000389 ORTHO05D000287 1.8e-11 74.3 126 35.7
PGSC0003DMG400011861 Solanum tuberosum HOM05D000475 ORTHO05D000343 1.8e-11 74.3 93 38.7
A10p33760 Brassica napus HOM05D000475 ORTHO05D000343 3.1e-11 73.6 97 39.2
BraA10t45406Z Brassica rapa HOM05D000475 ORTHO05D000343 3.1e-11 73.6 97 39.2
HanXRQChr14g0458941 Helianthus annuus HOM05D000475 ORTHO05D000343 6.9e-11 72.4 121 38.8
Haze_17377 Corylus avellana HOM05D000475 ORTHO05D000343 2.0e-10 70.9 101 43.6
Lsat_1_v5_gn_2_125761 Lactuca sativa HOM05D000475 ORTHO05D000343 3.4e-10 70.1 116 39.7
Duzib128G1179 Durio zibethinus HOM05D000475 ORTHO05D000343 5.9e-10 69.3 80 43.8
Dinv12172 Davidia involucrata HOM05D000475 ORTHO05D014148 7.6e-10 68.9 81 43.2
Lj4g0019173 Lotus japonicus HOM05D000475 ORTHO05D000343 7.6e-10 68.9 109 37.6
Dinv21798 Davidia involucrata HOM05D000475 ORTHO05D000343 5.0e-09 66.2 74 51.4
CSS0035168 Camellia sinensis var. sinensis HOM05D000475 ORTHO05D000343 6.5e-09 65.9 80 45.0
Duzib093G0789 Durio zibethinus HOM05D000475 ORTHO05D000343 8.5e-09 65.5 80 43.8
arahy.Tifrunner.gnm1.ann1.LAF8WM Arachis hypogaea HOM05D000475 ORTHO05D000343 1.1e-08 65.1 80 43.8
TPR.G25494 Trifolium pratense HOM05D000475 ORTHO05D011666 1.1e-08 65.1 82 41.5
Atru.chr8.2340 Acer truncatum HOM05D000475 ORTHO05D000343 1.4e-08 64.7 84 42.9
CiPaw.02G196700 Carya illinoinensis HOM05D000475 ORTHO05D000343 1.4e-08 64.7 80 45.0
Dinv35407 Davidia involucrata HOM05D000475 ORTHO05D000343 1.4e-08 64.7 79 39.2
EL10Ac5g12479 Beta vulgaris HOM05D000475 ORTHO05D000343 1.9e-08 64.3 113 33.6
TAR633G1711 Trochodendron aralioides HOM05D000475 ORTHO05D000343 2.5e-08 63.9 79 43.0
Cc06_g00720 Coffea canephora HOM05D000475 ORTHO05D000343 3.2e-08 63.5 79 40.5
Ah.12g059110 Amaranthus hybridus HOM05D000475 ORTHO05D000343 4.2e-08 63.2 93 38.7
Glyma.18G207500 Glycine max HOM05D000475 ORTHO05D000343 7.2e-08 62.4 82 42.7
Nitab4.5_0004057g0020 Nicotiana tabacum HOM05D000475 ORTHO05D000343 7.2e-08 62.4 52 55.8
Rhsim09G0080000 Rhododendron simsii HOM05D000475 ORTHO05D000343 7.2e-08 62.4 80 38.8
Aqoxy1G01277 Aquilegia oxysepala HOM05D000475 ORTHO05D000343 1.2e-07 61.6 65 52.3
CAN.G1288.8 Capsicum annuum HOM05D000475 ORTHO05D000343 1.6e-07 61.2 89 37.1
Hma1.2p1_0501F.1_g167350 Hydrangea macrophylla HOM05D000475 ORTHO05D000343 1.6e-07 61.2 78 41.0
SGA_v2.0_scaffold240G44069 Striga asiatica HOM05D000475 ORTHO05D000343 1.6e-07 61.2 64 45.3
GSVIVG01032736001 Vitis vinifera HOM05D000475 ORTHO05D000343 2.1e-07 60.8 74 47.3
CiPaw.09G215600 Carya illinoinensis HOM05D000475 ORTHO05D000343 2.7e-07 60.5 80 38.8
Actinidia13868 Actinidia chinensis HOM05D000475 ORTHO05D011666 3.6e-07 60.1 64 48.4
Lalb_Chr03g0043501 Lupinus albus HOM05D000475 ORTHO05D000343 3.6e-07 60.1 79 41.8
TWI77G0406 Tripterygium wilfordii HOM05D000475 ORTHO05D000343 4.6e-07 59.7 79 36.7
Phvul.008G092000 Phaseolus vulgaris HOM05D000475 ORTHO05D000343 6.1e-07 59.3 82 41.5
vmacro06936 Vaccinium macrocarpon HOM05D000475 ORTHO05D000343 6.1e-07 59.3 53 54.7
CSS0035305 Camellia sinensis var. sinensis HOM05D000475 ORTHO05D011666 7.9e-07 58.9 106 31.1
CAN.G1057.19 Capsicum annuum HOM05D000222 ORTHO05D004416 7.9e-07 58.9 66 40.9
COL.COLO4_14448 Corchorus olitorius HOM05D000475 ORTHO05D000343 7.9e-07 58.9 80 38.8
Actinidia11548 Actinidia chinensis HOM05D000475 ORTHO05D000343 1.0e-06 58.5 79 35.4
Solyc09g015120.4 Solanum lycopersicum HOM05D000475 ORTHO05D000343 1.0e-06 58.5 55 50.9
PGSC0003DMG400011862 Solanum tuberosum HOM05D000475 ORTHO05D000343 1.0e-06 58.5 65 41.5
ClCG10G022460 Citrullus lanatus HOM05D000475 ORTHO05D000343 1.3e-06 58.2 73 46.6
DCAR_028563 Daucus carota HOM05D000475 ORTHO05D000343 1.3e-06 58.2 80 42.5
Nitab4.5_0001703g0060 Nicotiana tabacum HOM05D000475 ORTHO05D000343 1.3e-06 58.2 52 53.8
Ciclev10011220m.g Citrus clementina HOM05D000475 ORTHO05D000343 1.8e-06 57.8 79 41.8
Sopen09g008410 Solanum pennellii HOM05D000475 ORTHO05D000343 1.8e-06 57.8 55 50.9
Cpa.g.sc5.240 Carica papaya HOM05D000475 ORTHO05D000343 2.3e-06 57.4 81 37.0
Lj1g0000774 Lotus japonicus HOM05D000475 ORTHO05D000343 2.3e-06 57.4 79 36.7
MELO3C009131.2 Cucumis melo HOM05D000475 ORTHO05D000343 3.0e-06 57.0 72 47.2
CsaV3_3G033400 Cucumis sativus L. HOM05D000475 ORTHO05D000343 3.0e-06 57.0 72 47.2
ECA236G0948 Erigeron canadensis HOM05D000475 ORTHO05D000343 3.0e-06 57.0 53 47.2
Rhsim03G0148200 Rhododendron simsii HOM05D000475 ORTHO05D000343 3.0e-06 57.0 52 55.8
BcaC06g31981 Brassica carinata HOM05D000475 ORTHO05D000343 3.9e-06 56.6 124 33.1
Cfa001257 Carpinus fangiana HOM05D000475 ORTHO05D000343 3.9e-06 56.6 75 42.7
QL07p033892 Quercus lobata HOM05D000475 ORTHO05D000343 6.7e-06 55.8 56 48.2
Actinidia33894 Actinidia chinensis HOM05D000475 ORTHO05D000343 8.7e-06 55.5 79 43.0
Nitab4.5_0001226g0100 Nicotiana tabacum HOM05D000475 ORTHO05D000343 8.7e-06 55.5 52 50.0
unitig_62.g23470 Utricularia gibba HOM05D000475 ORTHO05D000343 8.7e-06 55.5 95 33.7


User provided reference genes

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