Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0006700 Sechium edule HOM05D005328 ORTHO05D006049 2.9e-184 649.0 505 100.0
MELO3C017635.2 Cucumis melo HOM05D005328 ORTHO05D006049 1.8e-122 443.7 513 61.0
CsaV3_4G004310 Cucumis sativus L. HOM05D005328 ORTHO05D006049 1.8e-122 443.7 511 60.9
ClCG07G017100 Citrullus lanatus HOM05D005328 ORTHO05D006049 2.5e-119 433.3 511 57.9
TAR626G1462 Trochodendron aralioides HOM05D005328 ORTHO05D006049 4.6e-89 332.8 512 59.8
Rhsim13G0137800 Rhododendron simsii HOM05D005328 ORTHO05D006049 1.1e-87 328.2 506 44.9
Dinv04372 Davidia involucrata HOM05D005328 ORTHO05D006049 1.9e-87 327.4 515 44.5
Manes.03G095600 Manihot esculenta HOM05D005328 ORTHO05D006049 1.3e-86 324.7 523 44.4
Eucgr.E04239 Eucalyptus grandis HOM05D005328 ORTHO05D006049 1.5e-84 317.8 512 43.8
Gorai.005G008200 Gossypium raimondii HOM05D005328 ORTHO05D006049 1.7e-83 314.3 514 51.9
Hma1.2p1_0391F.1_g142830 Hydrangea macrophylla HOM05D005328 ORTHO05D006049 4.9e-83 312.8 506 44.7
Cpa.g.sc53.124 Carica papaya HOM05D005328 ORTHO05D006049 8.4e-83 312.0 512 46.7
Ca_00786_v3 Cicer arietinum L. HOM05D005328 ORTHO05D006049 1.9e-82 310.8 508 53.5
Ca_11373_v3 Cicer arietinum L. HOM05D005328 ORTHO05D006049 1.9e-82 310.8 508 53.5
Gohir.A02G007200 Gossypium hirsutum HOM05D005328 ORTHO05D006049 1.9e-82 310.8 514 50.0
CSS0022453 Camellia sinensis var. sinensis HOM05D005328 ORTHO05D006049 2.4e-82 310.5 516 43.4
Sc13g0008540 Simmondsia chinensis HOM05D005328 ORTHO05D006049 3.2e-82 310.1 508 47.4
Duzib151G0457 Durio zibethinus HOM05D005328 ORTHO05D006049 7.1e-82 308.9 514 46.1
Gohir.D02G007001 Gossypium hirsutum HOM05D005328 ORTHO05D006049 2.7e-81 307.0 514 51.6
Thecc.04G160200 Theobroma cacao HOM05D005328 ORTHO05D006049 1.0e-80 305.1 522 44.4
COL.COLO4_12851 Corchorus olitorius HOM05D005328 ORTHO05D006049 3.0e-80 303.5 523 47.0
Glyma.15G123900 Glycine max HOM05D005328 ORTHO05D006049 3.0e-80 303.5 515 48.5
Phvul.006G134100 Phaseolus vulgaris HOM05D005328 ORTHO05D006049 3.9e-80 303.1 510 45.1
Medtr2g028200 Medicago truncatula HOM05D005328 ORTHO05D006049 2.5e-79 300.4 527 60.0
Atru.chr1.2204 Acer truncatum HOM05D005328 ORTHO05D006049 3.3e-79 300.1 558 39.6
Actinidia02271 Actinidia chinensis HOM05D005328 ORTHO05D006049 5.6e-79 299.3 518 43.1
TPR.G10498 Trifolium pratense HOM05D005328 ORTHO05D006049 9.6e-79 298.5 509 53.2
Lj6g0010372 Lotus japonicus HOM05D005328 ORTHO05D006049 1.3e-78 298.1 519 43.5
SGA_v2.0_scaffold7G03648 Striga asiatica HOM05D005328 ORTHO05D006049 1.3e-78 298.1 510 47.1
Hund04726 Selenicereus undatus HOM05D005328 ORTHO05D006049 3.6e-78 296.6 509 52.1
Potri.006G000200 Populus trichocarpa HOM05D005328 ORTHO05D006049 4.8e-78 296.2 531 52.9
CAN.G2049.4 Capsicum annuum HOM05D005328 ORTHO05D006049 6.2e-78 295.8 526 46.6
HPP92_007484 Vanilla planifolia HOM05D005328 ORTHO05D006049 2.4e-77 293.9 505 42.2
PGR042G0801 Punica granatum HOM05D005328 ORTHO05D006049 3.1e-77 293.5 517 47.0
Aqoxy6G01137 Aquilegia oxysepala HOM05D005328 ORTHO05D006049 5.3e-77 292.7 546 54.2
GSVIVG01018754001 Vitis vinifera HOM05D005328 ORTHO05D006049 6.9e-77 292.4 578 58.0
CiPaw.10G085200 Carya illinoinensis HOM05D005328 ORTHO05D006049 5.8e-76 289.3 508 53.5
Ciclev10015350m.g Citrus clementina HOM05D005328 ORTHO05D006049 5.8e-76 289.3 515 42.3
Lsat_1_v5_gn_4_65161 Lactuca sativa HOM05D005328 ORTHO05D006049 1.3e-75 288.1 508 41.9
Lalb_Chr15g0088491 Lupinus albus HOM05D005328 ORTHO05D006049 2.2e-75 287.3 516 48.3
HanXRQChr17g0558521 Helianthus annuus HOM05D005328 ORTHO05D006049 4.2e-74 283.1 513 41.3
Oeu016925.1 Olea europaea HOM05D005328 ORTHO05D006049 4.2e-74 283.1 519 49.5
THA.LOC104804861 Tarenaya hassleriana HOM05D005328 ORTHO05D006049 9.3e-74 282.0 512 52.3
THA.LOC104807080 Tarenaya hassleriana HOM05D005328 ORTHO05D006049 9.3e-74 282.0 512 52.3
AUR62021212 Chenopodium quinoa HOM05D005328 ORTHO05D006049 1.2e-73 281.6 507 53.1
Nitab4.5_0005721g0030 Nicotiana tabacum HOM05D005328 ORTHO05D006049 1.2e-73 281.6 510 43.1
vmacro03583 Vaccinium macrocarpon HOM05D005328 ORTHO05D006049 1.6e-73 281.2 478 43.5
unitig_748.g7855 Utricularia gibba HOM05D005328 ORTHO05D006049 2.7e-73 280.4 523 40.9
VMungo0540G0318 Vigna mungo HOM05D005328 ORTHO05D006049 3.5e-73 280.0 509 40.3
arahy.Tifrunner.gnm1.ann1.B05UD4 Arachis hypogaea HOM05D005328 ORTHO05D006049 6.0e-73 279.3 506 54.2
A03p24730 Brassica napus HOM05D005328 ORTHO05D006049 7.9e-73 278.9 521 47.6
BraA03t11679Z Brassica rapa HOM05D005328 ORTHO05D006049 7.9e-73 278.9 521 47.8
Psat1g170800 Pisum sativum HOM05D005328 ORTHO05D006049 1.3e-72 278.1 505 59.0
Cc09_g00040 Coffea canephora HOM05D005328 ORTHO05D006049 3.9e-72 276.6 572 46.2
BcaB02g08879 Brassica carinata HOM05D005328 ORTHO05D006049 5.1e-72 276.2 507 50.7
BcaC02g12330 Brassica carinata HOM05D005328 ORTHO05D006049 6.7e-72 275.8 510 47.3
C03p29470 Brassica napus HOM05D005328 ORTHO05D006049 8.7e-72 275.4 512 47.5
ECA234G3238 Erigeron canadensis HOM05D005328 ORTHO05D006049 1.5e-71 274.6 510 41.4
BcaC01g05181 Brassica carinata HOM05D005328 ORTHO05D006049 1.9e-71 274.2 512 47.3
QL05p066147 Quercus lobata HOM05D005328 ORTHO05D006049 2.5e-71 273.9 514 46.3
Aa31LG1G25860 Aethionema arabicum HOM05D005328 ORTHO05D006049 9.6e-71 271.9 516 39.9
Sabra06G0000700 Salix brachista HOM05D005328 ORTHO05D006049 1.3e-70 271.6 529 49.5
Sopen02g029040 Solanum pennellii HOM05D005328 ORTHO05D006049 1.3e-70 271.6 524 41.0
Ah.07g207330 Amaranthus hybridus HOM05D005328 ORTHO05D002024 2.8e-70 270.4 567 50.1
BraA05t19414Z Brassica rapa HOM05D005328 ORTHO05D006049 3.7e-70 270.0 510 49.0
C04p05070 Brassica napus HOM05D005328 ORTHO05D006049 2.4e-69 267.3 510 50.4
SalBow8G1780 Salvia bowleyana HOM05D005328 ORTHO05D006049 2.4e-69 267.3 529 58.8
TWI63G1825 Tripterygium wilfordii HOM05D005328 ORTHO05D006049 3.1e-69 266.9 519 40.8
CARHR139360 Cardamine hirsuta HOM05D005328 ORTHO05D006049 4.0e-69 266.5 511 55.8
CDE03G0050 Ceratophyllum demersum HOM05D005328 ORTHO05D006049 5.3e-69 266.2 507 42.8
A05p04290 Brassica napus HOM05D005328 ORTHO05D006049 6.9e-69 265.8 507 49.1
MD04G1014200 Malus domestica HOM05D005328 ORTHO05D006049 9.0e-69 265.4 537 60.3
Migut.M01485 Erythranthe guttata HOM05D005328 ORTHO05D006049 2.0e-68 264.2 505 43.6
PSO017G7149 Papaver somniferum HOM05D005328 ORTHO05D006049 1.7e-67 261.2 528 53.8
Sp4g26280 Schrenkiella parvula HOM05D005328 ORTHO05D006049 3.8e-67 260.0 509 53.6
arahy.Tifrunner.gnm1.ann1.QMQM64 Arachis hypogaea HOM05D005328 ORTHO05D006049 4.9e-67 259.6 531 50.3
Nitab4.5_0002880g0010 Nicotiana tabacum HOM05D005328 ORTHO05D006049 1.4e-66 258.1 510 43.3
DCAR_022839 Daucus carota HOM05D005328 ORTHO05D006049 2.5e-66 257.3 169 79.3
Peaxi162Scf00083g00091 Petunia axillaris HOM05D005328 ORTHO05D006049 9.3e-66 255.4 511 50.9
AL4G43160 Arabidopsis lyrata HOM05D005328 ORTHO05D006049 1.6e-65 254.6 506 54.0
PSO170G6444 Papaver somniferum HOM05D005328 ORTHO05D006049 2.3e-64 250.8 544 56.6
EL10Ac3g05669 Beta vulgaris HOM05D005328 ORTHO05D006049 1.1e-63 248.4 513 49.1
AT2G44200 Arabidopsis thaliana HOM05D005328 ORTHO05D006049 3.3e-63 246.9 511 56.9
Solyc02g084340.3 Solanum lycopersicum HOM05D005328 ORTHO05D006049 4.3e-63 246.5 517 39.5
Prupe.1G161200 Prunus persica HOM05D005328 ORTHO05D006049 2.1e-62 244.2 595 57.5
Thhalv10001457m.g Eutrema salsugineum HOM05D005328 ORTHO05D006049 2.8e-62 243.8 509 40.3
RcHm_v2.0_Chr4g0414011 Rosa chinensis HOM05D005328 ORTHO05D006049 1.4e-61 241.5 528 62.5
Glyma.09G018000 Glycine max HOM05D005328 ORTHO05D006049 1.5e-60 238.0 540 45.9
BcaB01g03324 Brassica carinata HOM05D005328 ORTHO05D006049 1.0e-59 235.3 511 41.5
Carub.0004s2678 Capsella rubella HOM05D005328 ORTHO05D006049 1.3e-59 235.0 528 56.4
BolC3t15295H Brassica oleracea HOM05D005328 ORTHO05D006049 1.4e-58 231.5 542 42.6
THA.LOC104798630 Tarenaya hassleriana HOM05D005328 ORTHO05D006049 1.2e-57 228.4 214 64.0
FAN22G2230 Fragaria x ananassa HOM05D005328 ORTHO05D006049 1.0e-56 225.3 623 43.5
FAN07G1972 Fragaria x ananassa HOM05D005328 ORTHO05D006049 1.8e-56 224.6 606 45.2
FvH4_4g13451 Fragaria vesca HOM05D005328 ORTHO05D006049 5.1e-56 223.0 630 51.3
FAN17G2578 Fragaria x ananassa HOM05D005328 ORTHO05D006049 5.1e-56 223.0 585 45.0
FAN12G3626 Fragaria x ananassa HOM05D005328 ORTHO05D006049 8.7e-56 222.2 630 51.3
SEGI_06923 Sequoiadendron giganteum HOM05D005328 ORTHO05D006049 3.7e-54 216.9 640 48.3
PGSC0003DMG400003630 Solanum tuberosum HOM05D005328 ORTHO05D006049 8.2e-54 215.7 624 53.8
Os08g0500200 Oryza sativa ssp. japonica HOM05D005328 ORTHO05D006049 4.1e-53 213.4 525 50.1
AagrBONN_evm.TU.Sc2ySwM_228.5016 Anthoceros agrestis HOM05D005328 ORTHO05D006049 2.2e-51 207.6 192 63.0
Pp3c3_9980 Physcomitrium patens HOM05D005328 ORTHO05D006049 3.2e-50 203.8 170 64.7
Nn1g08402 Nelumbo nucifera HOM05D005328 ORTHO05D006049 5.5e-42 176.4 506 42.1
SMO143G0138 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 1.8e-40 171.4 529 31.4
Prupe.1G162300 Prunus persica HOM05D005328 ORTHO05D006049 8.8e-40 169.1 192 54.7
Zm00001eb034090 Zea mays HOM05D005328 ORTHO05D006049 2.8e-38 164.1 507 51.3
Mapoly0104s0032 Marchantia polymorpha HOM05D005328 ORTHO05D006049 2.0e-36 157.9 200 47.0
Carub.0004s2677 Capsella rubella HOM05D005328 ORTHO05D006049 1.7e-35 154.8 161 57.8
CDE06G1717 Ceratophyllum demersum HOM05D005328 ORTHO05D006049 5.0e-35 153.3 95 85.3
AUR62016004 Chenopodium quinoa HOM05D005328 ORTHO05D006049 2.1e-33 147.9 399 52.1
AUR62016005 Chenopodium quinoa HOM05D005328 ORTHO05D006049 2.7e-33 147.5 96 81.2
AT2G44195 Arabidopsis thaliana HOM05D005328 ORTHO05D006049 1.0e-32 145.6 149 56.4
ATR0751G077 Amborella trichopoda HOM05D005328 ORTHO05D006049 6.7e-32 142.9 114 70.2
CBR_g2953 Chara braunii HOM05D005328 ORTHO05D006049 2.0e-31 141.4 198 47.5
QL05p065813 Quercus lobata HOM05D005328 ORTHO05D006049 3.3e-31 140.6 82 87.8
SMO114G0026 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 2.2e-30 137.9 478 31.6
Zm00001eb097520 Zea mays HOM05D005328 ORTHO05D006049 3.2e-26 124.0 104 63.5
Prupe.1G161500 Prunus persica HOM05D005328 ORTHO05D006049 3.0e-24 117.5 136 54.4
DCAR_022842 Daucus carota HOM05D005328 ORTHO05D006049 5.7e-23 113.2 194 41.2
CDE06G0152 Ceratophyllum demersum HOM05D005328 ORTHO05D006049 3.1e-21 107.5 134 49.3
ATR0751G111 Amborella trichopoda HOM05D005328 ORTHO05D006049 9.1e-21 105.9 407 34.4
Cre01.g021400 Chlamydomonas reinhardtii HOM05D005328 ORTHO05D006049 1.6e-20 105.1 177 37.9
AL4G43150 Arabidopsis lyrata HOM05D005328 ORTHO05D006049 3.2e-18 97.4 154 45.5
Haze_07067 Corylus avellana HOM05D005328 ORTHO05D006049 3.2e-18 97.4 165 47.3
SMO246G0007 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 4.2e-18 97.1 63 79.4
SMO117G0022 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 3.0e-16 90.9 98 46.9
VMungo1383G0559 Vigna mungo HOM05D005328 ORTHO05D006049 2.0e-15 88.2 53 83.0
PRCOL_00001794 Prasinoderma coloniale HOM05D005328 ORTHO05D006049 1.7e-14 85.1 179 33.5
SMO117G0182 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 3.7e-14 84.0 98 44.9
TAR371G0561 Trochodendron aralioides HOM05D005328 ORTHO05D006049 4.9e-14 83.6 95 52.6
SMO117G0245 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 5.4e-13 80.1 86 44.2
SMO117G0350 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 2.3e-11 74.7 475 27.6
Actinidia26768 Actinidia chinensis HOM05D005328 ORTHO05D006049 1.6e-09 68.6 64 65.6
MCO07G343 Micromonas commoda HOM05D005328 ORTHO05D006049 6.1e-09 66.6 152 32.2
BcaB02g08878 Brassica carinata HOM05D005328 ORTHO05D006049 4.0e-08 63.9 124 37.1
MELO3C030939.2 Cucumis melo HOM05D019527 ORTHO05D006049 8.9e-08 62.8 46 73.9
MELO3C033373.2 Cucumis melo HOM05D019527 ORTHO05D006049 2.0e-07 61.6 47 70.2
MELO3C030757.2 Cucumis melo HOM05D019527 ORTHO05D006049 4.4e-07 60.5 46 71.7
Sabra16G0007800 Salix brachista HOM05D000040 ORTHO05D001305 9.8e-07 59.3 140 33.6
MELO3C028701.2 Cucumis melo HOM05D019527 ORTHO05D006049 1.3e-06 58.9 46 71.7
Potri.016G000501 Populus trichocarpa HOM05D005328 ORTHO05D006049 8.3e-06 56.2 62 61.3


User provided reference genes

Program Settings