Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0005866 Sechium edule HOM05D000237 ORTHO05D006530 0.0e+00 3604.7 1901 100.0
ClCG09G021810 Citrullus lanatus HOM05D000237 ORTHO05D006530 0.0e+00 2174.8 1993 65.0
MELO3C012713.2 Cucumis melo HOM05D000237 ORTHO05D006530 0.0e+00 2146.3 1971 65.6
CsaV3_7G022160 Cucumis sativus L. HOM05D000237 ORTHO05D006530 0.0e+00 2140.5 1971 64.2
CiPaw.15G030900 Carya illinoinensis HOM05D000237 ORTHO05D006530 5.6e-196 689.9 1955 34.1
Cfa018423 Carpinus fangiana HOM05D000237 ORTHO05D001145 9.2e-183 646.0 1931 32.8
Haze_17641 Corylus avellana HOM05D000237 ORTHO05D006530 9.2e-183 646.0 2034 32.4
QL09p032246 Quercus lobata HOM05D000237 ORTHO05D006530 9.9e-177 625.9 1713 34.0
GSVIVG01008802001 Vitis vinifera HOM05D000237 ORTHO05D006530 6.9e-162 576.6 2043 31.3
Prupe.1G489000 Prunus persica HOM05D000237 ORTHO05D006530 3.3e-156 557.8 1944 31.1
Ciclev10000009m.g Citrus clementina HOM05D000237 ORTHO05D006530 4.0e-154 550.8 1920 31.7
Potri.005G182900 Populus trichocarpa HOM05D000237 ORTHO05D006530 1.1e-146 526.2 1741 33.0
Dinv27266 Davidia involucrata HOM05D000237 ORTHO05D006530 6.1e-142 510.4 2033 31.4
Sabra02G0061100 Salix brachista HOM05D000237 ORTHO05D006530 3.8e-136 491.1 1999 30.6
CANSAT25G1894 Cannabis sativa HOM05D000237 ORTHO05D006530 5.0e-136 490.7 2040 30.8
Potri.002G077700 Populus trichocarpa HOM05D000237 ORTHO05D006530 1.1e-135 489.6 1637 32.7
Thecc.08G133600 Theobroma cacao HOM05D000237 ORTHO05D006530 1.1e-135 489.6 1973 29.6
Atru.chr13.1586 Acer truncatum HOM05D000237 ORTHO05D006530 1.4e-135 489.2 1676 30.9
RcHm_v2.0_Chr6g0296771 Rosa chinensis HOM05D000237 ORTHO05D006530 3.1e-130 471.5 1720 31.0
FAN27G0451 Fragaria x ananassa HOM05D000237 ORTHO05D006530 6.5e-128 463.8 1723 30.6
TWI32G0010 Tripterygium wilfordii HOM05D000237 ORTHO05D006530 3.2e-127 461.5 1883 29.7
FAN20G2323 Fragaria x ananassa HOM05D000237 ORTHO05D006530 4.7e-126 457.6 1728 30.3
MD15G1133400 Malus domestica HOM05D000237 ORTHO05D006530 6.1e-126 457.2 1934 28.9
Gorai.009G249000 Gossypium raimondii HOM05D000237 ORTHO05D006530 7.9e-126 456.8 2098 28.9
Gohir.D05G240100 Gossypium hirsutum HOM05D000237 ORTHO05D006530 3.0e-125 454.9 2101 28.8
CSS0037931 Camellia sinensis var. sinensis HOM05D000237 ORTHO05D006530 4.4e-124 451.1 1987 29.0
FAN15G0564 Fragaria x ananassa HOM05D000237 ORTHO05D006530 6.3e-123 447.2 1239 33.3
FvH4_2g27950 Fragaria vesca HOM05D000237 ORTHO05D006530 1.8e-122 445.7 1722 30.8
Gohir.A05G238100 Gossypium hirsutum HOM05D000237 ORTHO05D006530 9.1e-122 443.4 1994 29.4
FAN24G1388 Fragaria x ananassa HOM05D000237 ORTHO05D006530 1.6e-121 442.6 1714 30.6
Lalb_Chr04g0253551 Lupinus albus HOM05D000237 ORTHO05D006530 5.9e-121 440.7 1959 29.4
Duzib041G0809 Durio zibethinus HOM05D000237 ORTHO05D006530 1.1e-119 436.4 1921 29.1
Actinidia21273 Actinidia chinensis HOM05D000237 ORTHO05D006530 2.9e-112 411.8 2031 27.5
Rhsim06G0089600 Rhododendron simsii HOM05D000237 ORTHO05D006530 1.0e-109 403.3 1645 28.9
Glyma.13G034600 Glycine max HOM05D000237 ORTHO05D006530 6.8e-109 400.6 1704 29.2
Glyma.14G155900 Glycine max HOM05D000237 ORTHO05D006530 8.3e-107 393.7 1711 30.3
Phvul.001G067600 Phaseolus vulgaris HOM05D000237 ORTHO05D006530 1.4e-106 392.9 1650 28.7
TAR628G1620 Trochodendron aralioides HOM05D000237 ORTHO05D006530 1.4e-106 392.9 1996 29.5
Actinidia15209 Actinidia chinensis HOM05D000237 ORTHO05D006530 1.3e-104 386.3 1995 27.1
COL.COLO4_07934 Corchorus olitorius HOM05D000237 ORTHO05D006530 2.5e-103 382.1 604 44.4
VMungo0647G1100 Vigna mungo HOM05D000237 ORTHO05D006530 2.5e-103 382.1 1690 28.5
Duzib116G0766 Durio zibethinus HOM05D000237 ORTHO05D006530 6.1e-102 377.5 2073 27.8
Duzib093G2205 Durio zibethinus HOM05D000237 ORTHO05D006530 2.3e-101 375.6 868 35.3
Lj1g0018506 Lotus japonicus HOM05D000237 ORTHO05D006530 1.2e-100 373.2 2047 27.9
TWI34G0547 Tripterygium wilfordii HOM05D000237 ORTHO05D006530 2.0e-100 372.5 1873 28.5
arahy.Tifrunner.gnm1.ann1.8V8SFL Arachis hypogaea HOM05D000237 ORTHO05D006530 2.6e-100 372.1 1971 27.4
Ca_12643_v3 Cicer arietinum L. HOM05D000237 ORTHO05D001145 1.3e-99 369.8 1977 27.1
arahy.Tifrunner.gnm1.ann1.JKU5X8 Arachis hypogaea HOM05D000237 ORTHO05D006530 2.2e-99 369.0 1974 27.4
Manes.18G083000 Manihot esculenta HOM05D000237 ORTHO05D006530 2.5e-95 355.5 1857 29.6
Eucgr.E01003 Eucalyptus grandis HOM05D000237 ORTHO05D006530 1.7e-91 342.8 1747 27.8
PGR044G0116 Punica granatum HOM05D000237 ORTHO05D006530 1.8e-90 339.3 991 33.1
COL.COLO4_07936 Corchorus olitorius HOM05D000237 ORTHO05D006530 2.4e-90 339.0 597 41.0
Dinv14699 Davidia involucrata HOM05D000237 ORTHO05D006530 2.4e-90 339.0 650 41.1
Medtr1g029710 Medicago truncatula HOM05D000237 ORTHO05D006530 9.2e-90 337.0 1728 27.8
Psat6g040880 Pisum sativum HOM05D000237 ORTHO05D006530 1.6e-89 336.3 1897 26.9
TPR.G30554 Trifolium pratense HOM05D000237 ORTHO05D006530 1.7e-88 332.8 612 39.5
Nn5g28444 Nelumbo nucifera HOM05D000237 ORTHO05D006530 7.3e-87 327.4 1987 27.8
MBI03_g13492_MAGBIO Magnolia biondii HOM05D000237 ORTHO05D006530 8.0e-86 323.9 795 37.7
Aqoxy6G00305 Aquilegia oxysepala HOM05D000237 ORTHO05D006530 4.4e-84 318.2 672 38.5
Hma1.2p1_0880F.1_g231830 Hydrangea macrophylla HOM05D000237 ORTHO05D006530 3.7e-83 315.1 554 41.3
HanXRQChr09g0256631 Helianthus annuus HOM05D000237 ORTHO05D006530 3.2e-82 312.0 632 41.3
Solyc04g057990.4 Solanum lycopersicum HOM05D000237 ORTHO05D006530 6.6e-80 304.3 751 37.5
ECA232G3457 Erigeron canadensis HOM05D000237 ORTHO05D006530 7.3e-79 300.8 733 36.6
Peaxi162Scf00066g00427 Petunia axillaris HOM05D000237 ORTHO05D006530 1.2e-78 300.1 626 40.1
SalBow7G2018 Salvia bowleyana HOM05D000237 ORTHO05D006530 1.4e-77 296.6 768 34.6
SalBow7G1767 Salvia bowleyana HOM05D000237 ORTHO05D006530 4.0e-77 295.0 760 34.6
BcaC05g26074 Brassica carinata HOM05D000237 ORTHO05D006530 2.2e-75 289.3 665 38.5
Hund17350 Selenicereus undatus HOM05D000237 ORTHO05D006530 2.9e-75 288.9 1774 26.4
Thhalv10006523m.g Eutrema salsugineum HOM05D000237 ORTHO05D006530 3.7e-75 288.5 590 39.3
AUR62013435 Chenopodium quinoa HOM05D000237 ORTHO05D006530 8.3e-75 287.3 1732 27.4
Sopen04g025850 Solanum pennellii HOM05D000237 ORTHO05D006530 8.3e-75 287.3 1678 28.1
AT1G21580 Arabidopsis thaliana HOM05D000237 ORTHO05D006530 1.1e-74 287.0 649 37.0
Nitab4.5_0003485g0030 Nicotiana tabacum HOM05D000237 ORTHO05D006530 3.2e-74 285.4 746 33.6
THA.LOC104812079 Tarenaya hassleriana HOM05D000237 ORTHO05D006530 9.2e-74 283.9 1902 27.2
Sp1g19110 Schrenkiella parvula HOM05D000237 ORTHO05D006530 4.6e-73 281.6 629 38.6
CARHR021940 Cardamine hirsuta HOM05D000237 ORTHO05D006530 7.8e-73 280.8 631 38.7
SGA_v2.0_scaffold52G18914 Striga asiatica HOM05D000237 ORTHO05D006530 6.6e-72 277.7 691 34.7
AL1G34720 Arabidopsis lyrata HOM05D000237 ORTHO05D006530 1.1e-71 276.9 635 36.7
Cc10_g13690 Coffea canephora HOM05D000237 ORTHO05D006530 1.5e-71 276.6 790 34.2
arahy.Tifrunner.gnm1.ann1.A7GBNY Arachis hypogaea HOM05D000237 ORTHO05D006530 1.9e-71 276.2 577 37.4
Carub.0001s2101 Capsella rubella HOM05D000237 ORTHO05D006530 2.5e-71 275.8 1654 28.2
EL10Ac1g01364 Beta vulgaris HOM05D000237 ORTHO05D006530 5.6e-71 274.6 1706 26.8
arahy.Tifrunner.gnm1.ann1.S57KMF Arachis hypogaea HOM05D000237 ORTHO05D006530 1.6e-70 273.1 521 39.0
Cpa.g.sc1156.4 Carica papaya HOM05D000237 ORTHO05D006530 1.6e-70 273.1 281 58.4
C05p20570 Brassica napus HOM05D000237 ORTHO05D006530 6.2e-70 271.2 1713 27.0
ATR1001G008 Amborella trichopoda HOM05D000237 ORTHO05D006530 8.1e-70 270.8 647 36.6
BolC5t30755H Brassica oleracea HOM05D000237 ORTHO05D006530 8.1e-70 270.8 1713 27.0
arahy.Tifrunner.gnm1.ann1.6HV4D5 Arachis hypogaea HOM05D000237 ORTHO05D006530 1.1e-69 270.4 596 36.7
Migut.C01070 Erythranthe guttata HOM05D000237 ORTHO05D006530 6.8e-69 267.7 719 33.1
Lsat_1_v5_gn_4_135201 Lactuca sativa HOM05D000237 ORTHO05D006530 2.0e-68 266.2 624 35.4
PSO170G5097 Papaver somniferum HOM05D000237 ORTHO05D006530 5.8e-68 264.6 605 37.9
DCAR_003591 Daucus carota HOM05D000237 ORTHO05D006530 1.9e-66 259.6 630 34.3
A06p17660 Brassica napus HOM05D000237 ORTHO05D006530 2.4e-66 259.2 545 40.2
Nitab4.5_0000317g0120 Nicotiana tabacum HOM05D000237 ORTHO05D006530 7.1e-66 257.7 774 32.6
C08p20910 Brassica napus HOM05D000237 ORTHO05D006530 1.2e-65 256.9 613 37.5
PSO528G0213 Papaver somniferum HOM05D000237 ORTHO05D006530 1.6e-65 256.5 604 38.2
BolC8t49729H Brassica oleracea HOM05D000237 ORTHO05D006530 2.1e-65 256.1 611 37.2
A08p28930 Brassica napus HOM05D000987 ORTHO05D006530 4.6e-65 255.0 634 35.8
BraA08t34823Z Brassica rapa HOM05D000237 ORTHO05D006530 4.6e-65 255.0 634 35.8
Zm00001eb387360 Zea mays HOM05D000237 ORTHO05D006530 7.8e-65 254.2 570 36.5
Os06g0638000 Oryza sativa ssp. japonica HOM05D000237 ORTHO05D006530 4.3e-63 248.4 566 35.0
Sc20g0002700 Simmondsia chinensis HOM05D000237 ORTHO05D006530 9.6e-63 247.3 323 47.7
Ah.05g169070 Amaranthus hybridus HOM05D000237 ORTHO05D006530 2.1e-62 246.1 620 36.1
CDE08G0007 Ceratophyllum demersum HOM05D000237 ORTHO05D006530 7.6e-60 237.7 842 31.5
Aa31LG7G5550 Aethionema arabicum HOM05D000237 ORTHO05D006530 7.8e-57 227.6 1246 27.5
CDE06G0289 Ceratophyllum demersum HOM05D000237 ORTHO05D008083 3.6e-54 218.8 694 31.6
SEGI_16153 Sequoiadendron giganteum HOM05D000237 ORTHO05D006530 1.1e-53 217.2 261 49.0
HPP92_004772 Vanilla planifolia HOM05D000237 ORTHO05D006530 1.8e-48 199.9 857 28.4
Mapoly0097s0070 Marchantia polymorpha HOM05D000237 ORTHO05D006530 5.1e-48 198.4 459 35.1
AL2G37460 Arabidopsis lyrata HOM05D000237 ORTHO05D006530 6.2e-46 191.4 380 38.9
SMO367G0550 Selaginella moellendorffii HOM05D000237 ORTHO05D006530 4.0e-45 188.7 224 46.9
vmacro21123 Vaccinium macrocarpon HOM05D000237 ORTHO05D006530 1.0e-40 174.1 305 41.0
Pp3c2_14590 Physcomitrium patens HOM05D000237 ORTHO05D006530 2.6e-36 159.5 304 37.8
CARHR070760 Cardamine hirsuta HOM05D000237 ORTHO05D006530 1.0e-35 157.5 187 48.7
SHI09235 Sapria himalayana HOM05D000237 ORTHO05D006530 4.2e-34 152.1 105 67.6
TPR.G40837 Trifolium pratense HOM05D000237 ORTHO05D006530 8.2e-30 137.9 125 58.4
TPR.G4655 Trifolium pratense HOM05D000237 ORTHO05D013217 2.0e-28 133.3 98 68.4
AUR62007706 Chenopodium quinoa HOM05D000237 ORTHO05D006530 4.5e-28 132.1 1531 24.2
PGSC0003DMG401025318 Solanum tuberosum HOM05D000237 ORTHO05D006530 2.2e-27 129.8 1806 25.1
CBR_g18950 Chara braunii HOM05D000237 ORTHO05D006530 3.6e-25 122.5 288 34.4
Cpa.g.sc1156.5 Carica papaya HOM05D000237 ORTHO05D006530 2.2e-22 113.2 248 40.3
vmacro21124 Vaccinium macrocarpon HOM05D000237 ORTHO05D006530 6.3e-22 111.7 1612 22.1
MD08G1160000 Malus domestica HOM05D000237 ORTHO05D006530 1.1e-18 100.9 114 46.5
Cpa.g.sc1718.3 Carica papaya HOM05D000237 ORTHO05D006530 2.5e-18 99.8 555 29.9
LjContig00357g0005900 Lotus japonicus HOM05D000237 ORTHO05D005612 5.1e-16 92.0 446 29.4
Dinv14698 Davidia involucrata HOM05D000237 ORTHO05D006530 1.7e-14 87.0 887 24.1
Oeu030983.1 Olea europaea HOM05D000237 ORTHO05D006530 2.8e-14 86.3 73 67.1
Oeu047172.1 Olea europaea HOM05D000237 ORTHO05D006530 7.7e-12 78.2 127 37.8
unitig_46.g18088 Utricularia gibba HOM05D000237 ORTHO05D006530 2.0e-07 63.5 389 26.2
Lalb_Chr11g0066211 Lupinus albus HOM05D000237 ORTHO05D006530 9.7e-07 61.2 168 35.1
Oeu045950.1 Olea europaea HOM05D000237 ORTHO05D006530 1.7e-06 60.5 390 25.9


User provided reference genes

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