Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0005850 Sechium edule HOM05D004716 ORTHO05D005646 0.0e+00 1187.2 604 100.0
ClCG09G009620 Citrullus lanatus HOM05D004716 ORTHO05D005646 3.5e-309 1064.3 611 90.0
CsaV3_7G025180 Cucumis sativus L. HOM05D004716 ORTHO05D005646 1.4e-302 1042.3 611 88.2
MELO3C023718.2 Cucumis melo HOM05D004716 ORTHO05D005646 1.0e-300 1036.2 611 87.9
Sed0016522 Sechium edule HOM05D004716 ORTHO05D005646 1.8e-294 1015.4 610 86.6
Sed0004003 Sechium edule HOM05D004716 ORTHO05D005646 5.4e-294 1013.8 509 99.4
Haze_17746 Corylus avellana HOM05D004716 ORTHO05D005646 5.2e-265 917.5 614 77.5
Cfa018329 Carpinus fangiana HOM05D004716 ORTHO05D005646 5.8e-264 914.1 614 77.5
Prupe.8G028200 Prunus persica HOM05D004716 ORTHO05D005646 1.9e-262 909.1 622 76.2
CiPaw.15G016900 Carya illinoinensis HOM05D004716 ORTHO05D005646 6.0e-261 904.0 612 75.3
Potri.005G191300 Populus trichocarpa HOM05D004716 ORTHO05D005646 2.4e-257 892.1 624 74.8
CiPaw.16G013500 Carya illinoinensis HOM05D004716 ORTHO05D005646 3.1e-257 891.7 613 75.7
Manes.18G091200 Manihot esculenta HOM05D004716 ORTHO05D005646 4.0e-257 891.3 616 76.0
MD05G1023700 Malus domestica HOM05D004716 ORTHO05D005646 1.5e-256 889.4 624 74.2
Potri.002G069100 Populus trichocarpa HOM05D004716 ORTHO05D005646 3.4e-256 888.3 638 73.4
Sabra05G0146100 Salix brachista HOM05D004716 ORTHO05D005646 6.0e-253 877.5 625 75.2
CANSAT25G0539 Cannabis sativa HOM05D004716 ORTHO05D005646 7.8e-253 877.1 631 73.9
Dinv41092 Davidia involucrata HOM05D004716 ORTHO05D005646 3.0e-252 875.2 633 73.8
Duzib116G0661 Durio zibethinus HOM05D004716 ORTHO05D005646 5.1e-252 874.4 617 75.4
Atru.chr13.2155 Acer truncatum HOM05D004716 ORTHO05D005646 1.9e-251 872.5 642 72.1
Sabra02G0054300 Salix brachista HOM05D004716 ORTHO05D005646 2.1e-250 869.0 638 71.9
TWI34G0952 Tripterygium wilfordii HOM05D004716 ORTHO05D005646 2.1e-250 869.0 616 75.0
GSVIVG01034512001 Vitis vinifera HOM05D004716 ORTHO05D005646 3.6e-250 868.2 619 73.2
COL.COLO4_37837 Corchorus olitorius HOM05D004716 ORTHO05D005646 1.7e-247 859.4 611 75.1
Thecc.08G149900 Theobroma cacao HOM05D004716 ORTHO05D005646 2.9e-247 858.6 610 74.3
Duzib041G0148 Durio zibethinus HOM05D004716 ORTHO05D005646 3.8e-247 858.2 617 74.2
Gorai.009G253500 Gossypium raimondii HOM05D004716 ORTHO05D005646 4.9e-247 857.8 618 74.1
RcHm_v2.0_Chr6g0275661 Rosa chinensis HOM05D004716 ORTHO05D005646 4.9e-247 857.8 622 72.3
MD10G1024300 Malus domestica HOM05D004716 ORTHO05D005646 6.4e-247 857.4 626 72.5
Hma1.2p1_0105F.1_g050810 Hydrangea macrophylla HOM05D004716 ORTHO05D005646 8.4e-247 857.1 653 69.5
Gohir.A05G242900 Gossypium hirsutum HOM05D004716 ORTHO05D005646 2.7e-245 852.0 618 73.5
Dinv25852 Davidia involucrata HOM05D004716 ORTHO05D005646 7.8e-245 850.5 634 71.6
arahy.Tifrunner.gnm1.ann1.LT68UB Arachis hypogaea HOM05D004716 ORTHO05D005646 3.0e-244 848.6 637 72.2
arahy.Tifrunner.gnm1.ann1.RZZD7S Arachis hypogaea HOM05D004716 ORTHO05D005646 3.0e-244 848.6 637 72.2
TWI60G0041 Tripterygium wilfordii HOM05D004716 ORTHO05D005646 2.5e-243 845.5 612 73.0
TAR381G1500 Trochodendron aralioides HOM05D004716 ORTHO05D005646 2.5e-243 845.5 649 69.5
Duzib093G0980 Durio zibethinus HOM05D004716 ORTHO05D005646 1.6e-242 842.8 612 73.4
FAN27G2333 Fragaria x ananassa HOM05D004716 ORTHO05D005646 4.8e-242 841.3 617 71.6
FvH4_2g13910 Fragaria vesca HOM05D004716 ORTHO05D005646 1.2e-240 836.6 617 71.3
FAN15G2444 Fragaria x ananassa HOM05D004716 ORTHO05D005646 1.3e-239 833.2 614 71.3
FAN20G2258 Fragaria x ananassa HOM05D004716 ORTHO05D005646 1.3e-239 833.2 617 71.2
Glyma.10G225500 Glycine max HOM05D004716 ORTHO05D005646 1.7e-239 832.8 613 72.3
Nn5g28715 Nelumbo nucifera HOM05D004716 ORTHO05D005646 2.9e-239 832.0 638 69.3
FAN24G2048 Fragaria x ananassa HOM05D004716 ORTHO05D005646 6.4e-239 830.9 617 70.8
TAR625G0458 Trochodendron aralioides HOM05D004716 ORTHO05D005646 2.4e-238 828.9 640 69.2
Glyma.20G166300 Glycine max HOM05D004716 ORTHO05D005646 4.2e-238 828.2 613 71.8
Lalb_Chr01g0009631 Lupinus albus HOM05D004716 ORTHO05D005646 4.2e-238 828.2 635 69.3
Gohir.A05G270100 Gossypium hirsutum HOM05D004716 ORTHO05D005646 4.6e-237 824.7 618 72.2
Gorai.009G285100 Gossypium raimondii HOM05D004716 ORTHO05D005646 7.9e-237 823.9 618 72.3
Phvul.007G079400 Phaseolus vulgaris HOM05D004716 ORTHO05D005646 3.9e-236 821.6 609 72.1
Actinidia17798 Actinidia chinensis HOM05D004716 ORTHO05D005646 8.7e-236 820.5 622 70.4
QL02p024060 Quercus lobata HOM05D004716 ORTHO05D005646 3.7e-234 815.1 764 60.2
Ciclev10000573m.g Citrus clementina HOM05D004716 ORTHO05D005646 6.2e-234 814.3 640 68.6
Oeu046025.1 Olea europaea HOM05D004716 ORTHO05D005646 4.2e-230 801.6 627 68.1
MBI09_g32373_MAGBIO Magnolia biondii HOM05D004716 ORTHO05D005646 9.3e-230 800.4 618 70.1
Ca_19935_v3 Cicer arietinum L. HOM05D004716 ORTHO05D005646 3.5e-229 798.5 620 69.7
Cc10_g14730 Coffea canephora HOM05D004716 ORTHO05D005646 3.5e-229 798.5 640 66.7
Aqoxy5G02106 Aquilegia oxysepala HOM05D004716 ORTHO05D005646 7.9e-229 797.3 637 68.0
Lj5g0004042 Lotus japonicus HOM05D004716 ORTHO05D005646 3.0e-228 795.4 623 69.8
Rhsim06G0090400 Rhododendron simsii HOM05D004716 ORTHO05D005646 1.5e-227 793.1 626 68.1
EL10Ac1g01533 Beta vulgaris HOM05D004716 ORTHO05D005646 2.5e-227 792.3 627 68.4
Eucgr.F04241 Eucalyptus grandis HOM05D004716 ORTHO05D005646 5.6e-227 791.2 637 67.2
Gohir.D05G272200 Gossypium hirsutum HOM05D004716 ORTHO05D005646 8.2e-226 787.3 618 70.1
Ah.05g167860 Amaranthus hybridus HOM05D004716 ORTHO05D005646 3.4e-224 781.9 615 68.5
Gohir.D05G244400 Gossypium hirsutum HOM05D004716 ORTHO05D005646 1.3e-223 780.0 618 69.7
HanXRQChr10g0279061 Helianthus annuus HOM05D004716 ORTHO05D005646 1.7e-223 779.6 634 66.6
Migut.N03224 Erythranthe guttata HOM05D004716 ORTHO05D005646 2.2e-223 779.2 652 64.1
THA.LOC104809692 Tarenaya hassleriana HOM05D004716 ORTHO05D005646 6.5e-223 777.7 582 70.3
Nitab4.5_0008759g0020 Nicotiana tabacum HOM05D004716 ORTHO05D005646 1.1e-222 776.9 634 65.6
MSTRG.22371 Avicennia marina HOM05D004716 ORTHO05D005646 4.2e-222 775.0 654 64.2
AUR62013572 Chenopodium quinoa HOM05D004716 ORTHO05D005646 3.5e-221 771.9 636 65.6
Nitab4.5_0000032g0020 Nicotiana tabacum HOM05D004716 ORTHO05D005646 4.6e-221 771.5 634 64.8
PGR044G2101 Punica granatum HOM05D004716 ORTHO05D005646 2.3e-220 769.2 628 64.5
Aa31LG6G9740 Aethionema arabicum HOM05D004716 ORTHO05D005646 6.7e-220 767.7 624 66.2
AUR62026717 Chenopodium quinoa HOM05D004716 ORTHO05D005646 8.7e-220 767.3 609 66.8
Carub.0001s3471 Capsella rubella HOM05D004716 ORTHO05D005646 1.9e-219 766.1 617 66.5
DCAR_001131 Daucus carota HOM05D004716 ORTHO05D005646 1.6e-218 763.1 620 65.6
TPR.G30003 Trifolium pratense HOM05D004716 ORTHO05D005646 4.8e-218 761.5 620 67.6
Sopen04g027280 Solanum pennellii HOM05D004716 ORTHO05D005646 2.4e-217 759.2 641 63.2
Lalb_Chr06g0161551 Lupinus albus HOM05D004716 ORTHO05D005646 9.0e-217 757.3 601 68.1
PSO210G2251 Papaver somniferum HOM05D004716 ORTHO05D005646 1.7e-215 753.1 646 63.9
Medtr1g098940 Medicago truncatula HOM05D004716 ORTHO05D005646 2.2e-215 752.7 630 66.5
Peaxi162Scf00765g00315 Petunia axillaris HOM05D004716 ORTHO05D005646 2.9e-215 752.3 631 63.9
Thhalv10011324m.g Eutrema salsugineum HOM05D004716 ORTHO05D005646 3.8e-215 751.9 630 64.3
Lsat_1_v5_gn_6_99641 Lactuca sativa HOM05D004716 ORTHO05D005646 8.5e-215 750.7 624 64.7
TPR.G36694 Trifolium pratense HOM05D004716 ORTHO05D005646 1.4e-214 750.0 564 69.5
AT1G43690 Arabidopsis thaliana HOM05D004716 ORTHO05D005646 2.5e-214 749.2 617 65.5
AL1G51810 Arabidopsis lyrata HOM05D004716 ORTHO05D005646 3.2e-214 748.8 619 65.3
CAN.G268.7 Capsicum annuum HOM05D004716 ORTHO05D005646 1.2e-213 746.9 642 62.5
Sp1g32700 Schrenkiella parvula HOM05D004716 ORTHO05D005646 2.1e-213 746.1 629 64.2
BcaC08g42816 Brassica carinata HOM05D004716 ORTHO05D005646 1.0e-212 743.8 604 65.2
C06p00280 Brassica napus HOM05D004716 ORTHO05D005646 1.0e-212 743.8 604 65.2
Lj7A371T50 Lonicera japonica HOM05D004716 ORTHO05D005646 1.1e-211 740.3 566 69.4
SalBow7G0781 Salvia bowleyana HOM05D004716 ORTHO05D005646 7.4e-211 737.6 620 64.2
ECA246G4589 Erigeron canadensis HOM05D004716 ORTHO05D005646 1.3e-210 736.9 620 65.0
A10p07790 Brassica napus HOM05D004716 ORTHO05D005646 4.8e-210 734.9 609 64.5
BraSC36t46025Z Brassica rapa HOM05D004716 ORTHO05D005646 1.8e-209 733.0 609 64.4
BcaB07g33979 Brassica carinata HOM05D004716 ORTHO05D005646 2.4e-209 732.6 618 64.2
Solyc04g071320.4 Solanum lycopersicum HOM05D004716 ORTHO05D005646 9.1e-209 730.7 641 61.0
PSO238G0051 Papaver somniferum HOM05D004716 ORTHO05D005646 2.2e-207 726.1 645 61.4
SGA_v2.0_scaffold25G11175 Striga asiatica HOM05D004716 ORTHO05D005646 3.6e-205 718.8 652 61.0
Nn1g06102 Nelumbo nucifera HOM05D004716 ORTHO05D005646 6.1e-205 718.0 489 75.3
CARHR035580 Cardamine hirsuta HOM05D004716 ORTHO05D005646 6.3e-202 708.0 612 62.1
unitig_62.g23528 Utricularia gibba HOM05D004716 ORTHO05D005646 3.0e-196 689.1 638 59.7
Lj4C695G10 Lonicera japonica HOM05D004716 ORTHO05D005646 1.4e-193 680.2 606 60.6
CSS0049856 Camellia sinensis var. sinensis HOM05D004716 ORTHO05D005646 7.7e-192 674.5 459 74.9
Migut.C01013 Erythranthe guttata HOM05D004716 ORTHO05D005646 6.5e-191 671.4 612 60.0
CDE08G0143 Ceratophyllum demersum HOM05D004716 ORTHO05D005646 2.5e-190 669.5 617 60.1
SalBow6G6163 Salvia bowleyana HOM05D004716 ORTHO05D005646 1.2e-189 667.2 680 56.5
Cpa.g.sc21.190 Carica papaya HOM05D004716 ORTHO05D005646 1.3e-186 657.1 440 76.4
Zm00001eb422340 Zea mays HOM05D004716 ORTHO05D005646 2.8e-186 656.0 634 57.7
Ca_25988_v3 Cicer arietinum L. HOM05D004716 ORTHO05D005646 3.7e-178 629.0 397 77.6
SHI09390 Sapria himalayana HOM05D004716 ORTHO05D005646 2.9e-175 619.4 484 65.9
Oeu011938.1 Olea europaea HOM05D004716 ORTHO05D005646 5.0e-175 618.6 627 57.6
SGA_v2.0_scaffold24G10374 Striga asiatica HOM05D004716 ORTHO05D005646 3.4e-171 605.9 626 55.9
HPP92_019355 Vanilla planifolia HOM05D004716 ORTHO05D005646 5.7e-171 605.1 559 60.3
ATR0772G093 Amborella trichopoda HOM05D004716 ORTHO05D005646 3.5e-168 595.9 460 65.7
Sc02g0004170 Simmondsia chinensis HOM05D004716 ORTHO05D005646 9.8e-163 577.8 455 65.5
CDE06G2375 Ceratophyllum demersum HOM05D004716 ORTHO05D005646 1.4e-161 573.9 615 54.8
SMO331G0079 Selaginella moellendorffii HOM05D004716 ORTHO05D005646 1.4e-161 573.9 615 51.7
Mapoly0014s0164 Marchantia polymorpha HOM05D004716 ORTHO05D005646 3.0e-159 566.2 656 48.8
Oeu014493.1 Olea europaea HOM05D004716 ORTHO05D005646 1.1e-158 564.3 366 75.7
Psat6g193200 Pisum sativum HOM05D004716 ORTHO05D005646 1.1e-158 564.3 315 84.8
Pp3c6_18530 Physcomitrium patens HOM05D004716 ORTHO05D005646 2.2e-154 550.1 651 47.9
Pp3c5_6660 Physcomitrium patens HOM05D004716 ORTHO05D005646 4.9e-154 548.9 647 48.5
Psat6g193040 Pisum sativum HOM05D004716 ORTHO05D005646 8.6e-151 538.1 300 83.7
AagrBONN_evm.TU.Sc2ySwM_344.4417 Anthoceros agrestis HOM05D004716 ORTHO05D005646 1.1e-150 537.7 677 47.6
vmacro21155 Vaccinium macrocarpon HOM05D004716 ORTHO05D005646 3.4e-139 499.6 315 76.5
Zm00001eb422260 Zea mays HOM05D004716 ORTHO05D005646 3.2e-129 466.5 315 72.1
Os04g0421800 Oryza sativa ssp. japonica HOM05D004716 ORTHO05D005646 2.6e-123 446.8 300 71.3
CBR_g11170 Chara braunii HOM05D004716 ORTHO05D005646 6.4e-122 442.2 554 45.8
HanXRQChr10g0277841 Helianthus annuus HOM05D004716 ORTHO05D005646 1.6e-109 401.0 316 68.0
Zm00001eb422280 Zea mays HOM05D004716 ORTHO05D005646 2.8e-101 373.6 257 69.6
Zm00001eb422320 Zea mays HOM05D004716 ORTHO05D005646 2.8e-101 373.6 257 69.6
Actinidia10653 Actinidia chinensis HOM05D004716 ORTHO05D005646 1.1e-65 255.4 227 63.4
PRCOL_00002924 Prasinoderma coloniale HOM05D004716 ORTHO05D005646 1.6e-56 224.9 380 36.6
Cpa.g.sc21.191 Carica papaya HOM05D004716 ORTHO05D005646 3.2e-44 184.1 166 68.1
VMungo0464G1352 Vigna mungo HOM05D004716 ORTHO05D005646 9.2e-44 182.6 220 55.5
ATR0772G018 Amborella trichopoda HOM05D004716 ORTHO05D005646 4.0e-31 140.6 190 50.0
CAN.G309.90 Capsicum annuum HOM05D004716 ORTHO05D005646 5.2e-31 140.2 179 47.5
Cre06.g286600 Chlamydomonas reinhardtii HOM05D004716 ORTHO05D005646 2.4e-28 131.3 287 34.1
Actinidia13988 Actinidia chinensis HOM05D004716 ORTHO05D005646 1.7e-26 125.2 88 67.0
PRCOL_00004133 Prasinoderma coloniale HOM05D004716 ORTHO05D005646 3.0e-26 124.4 304 32.9
Actinidia10651 Actinidia chinensis HOM05D004716 ORTHO05D005646 6.6e-26 123.2 162 50.6
Ca_25987_v3 Cicer arietinum L. HOM05D004716 ORTHO05D005646 1.7e-18 98.6 133 51.1
TAR636G3535 Trochodendron aralioides HOM05D004716 ORTHO05D005646 7.3e-17 93.2 92 63.0
CSS0021208 Camellia sinensis var. sinensis HOM05D004716 ORTHO05D005646 8.1e-16 89.7 134 47.8
HanXRQChr10g0277851 Helianthus annuus HOM05D004716 ORTHO05D005646 1.8e-15 88.6 106 53.8
SEGI_31186 Sequoiadendron giganteum HOM05D004716 ORTHO05D005646 4.4e-14 84.0 152 43.4
Oeu014494.1 Olea europaea HOM05D004716 ORTHO05D005646 5.4e-12 77.0 151 42.4
Psat6g193080 Pisum sativum HOM05D000257 ORTHO05D008537 7.8e-11 73.2 67 59.7


User provided reference genes

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