Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0005547 Sechium edule HOM05D004855 ORTHO05D005656 2.8e-61 238.4 120 100.0
MELO3C012349.2 Cucumis melo HOM05D004855 ORTHO05D005656 3.9e-47 191.4 107 86.0
CsaV3_5G035370 Cucumis sativus L. HOM05D004855 ORTHO05D005656 2.2e-45 185.7 107 85.0
Lalb_Chr21g0309181 Lupinus albus HOM05D004855 ORTHO05D005656 3.3e-38 161.8 107 73.8
QL04p046696 Quercus lobata HOM05D004855 ORTHO05D005656 2.2e-37 159.1 106 70.8
Cfa021941 Carpinus fangiana HOM05D004855 ORTHO05D005656 2.8e-37 158.7 107 69.2
Glyma.10G278800 Glycine max HOM05D004855 ORTHO05D005656 3.1e-36 155.2 107 68.2
Dinv10926 Davidia involucrata HOM05D004855 ORTHO05D005656 4.1e-36 154.8 113 67.3
Cfa016620 Carpinus fangiana HOM05D004855 ORTHO05D005656 9.1e-36 153.7 107 66.4
GSVIVG01000981001 Vitis vinifera HOM05D004855 ORTHO05D005656 9.1e-36 153.7 109 67.9
Glyma.20G111700 Glycine max HOM05D004855 ORTHO05D005656 1.2e-35 153.3 107 67.3
Nn6g34881 Nelumbo nucifera HOM05D004855 ORTHO05D005656 1.2e-35 153.3 108 66.7
Ciclev10013171m.g Citrus clementina HOM05D004855 ORTHO05D005656 1.5e-35 152.9 108 67.6
Phvul.007G022600 Phaseolus vulgaris HOM05D004855 ORTHO05D005656 2.0e-35 152.5 107 66.4
Actinidia31268 Actinidia chinensis HOM05D004855 ORTHO05D005656 2.6e-35 152.1 107 64.5
Haze_19625 Corylus avellana HOM05D004855 ORTHO05D005656 2.6e-35 152.1 107 65.4
VMungo0720G0894 Vigna mungo HOM05D004855 ORTHO05D005656 2.6e-35 152.1 107 65.4
GSVIVG01033859001 Vitis vinifera HOM05D004855 ORTHO05D005656 2.6e-35 152.1 108 66.7
MD14G1024000 Malus domestica HOM05D004855 ORTHO05D005656 4.5e-35 151.4 110 61.8
CiPaw.09G015100 Carya illinoinensis HOM05D004855 ORTHO05D005656 5.9e-35 151.0 107 64.5
TAR633G0291 Trochodendron aralioides HOM05D004855 ORTHO05D005656 5.9e-35 151.0 108 66.7
ClCG05G021800 Citrullus lanatus HOM05D004855 ORTHO05D005656 1.7e-34 149.4 88 84.1
Cc06_g05940 Coffea canephora HOM05D004855 ORTHO05D005656 2.2e-34 149.1 108 63.0
TWI77G0302 Tripterygium wilfordii HOM05D004855 ORTHO05D005656 2.2e-34 149.1 108 64.8
Duzib106G1994 Durio zibethinus HOM05D004855 ORTHO05D005656 2.9e-34 148.7 107 65.4
Sabra10G0187300 Salix brachista HOM05D004855 ORTHO05D005656 2.9e-34 148.7 120 56.7
CiPaw.13G039700 Carya illinoinensis HOM05D004855 ORTHO05D005656 3.8e-34 148.3 107 66.4
Lj5g0001855 Lotus japonicus HOM05D004855 ORTHO05D005656 5.0e-34 147.9 107 64.5
CSS0028852 Camellia sinensis var. sinensis HOM05D004855 ORTHO05D005656 1.1e-33 146.7 108 63.0
Dinv21197 Davidia involucrata HOM05D004855 ORTHO05D005656 2.5e-33 145.6 108 63.0
Potri.010G239200 Populus trichocarpa HOM05D004855 ORTHO05D005656 2.5e-33 145.6 107 60.7
TWI74G1617 Tripterygium wilfordii HOM05D004855 ORTHO05D005656 3.2e-33 145.2 108 63.9
Atru.chr8.1484 Acer truncatum HOM05D004855 ORTHO05D005656 5.5e-33 144.4 108 64.8
MSTRG.5853 Avicennia marina HOM05D004855 ORTHO05D005656 5.5e-33 144.4 108 63.0
Ca_25663_v3 Cicer arietinum L. HOM05D004855 ORTHO05D005656 5.5e-33 144.4 108 66.7
CANSAT64G1995 Cannabis sativa HOM05D004855 ORTHO05D005656 7.2e-33 144.1 108 62.0
Eucgr.K02028 Eucalyptus grandis HOM05D004855 ORTHO05D005656 7.2e-33 144.1 107 62.6
SalBow3G4427 Salvia bowleyana HOM05D004855 ORTHO05D005656 7.2e-33 144.1 107 61.7
Manes.09G054300 Manihot esculenta HOM05D004855 ORTHO05D005656 9.4e-33 143.7 108 64.8
Prupe.7G108800 Prunus persica HOM05D004855 ORTHO05D005656 9.4e-33 143.7 107 59.8
Thecc.05G090600 Theobroma cacao HOM05D004855 ORTHO05D005656 2.7e-32 142.1 107 62.6
Gohir.A11G319200 Gossypium hirsutum HOM05D004855 ORTHO05D005656 3.6e-32 141.7 107 61.7
Gohir.D11G338500 Gossypium hirsutum HOM05D004855 ORTHO05D005656 3.6e-32 141.7 107 61.7
Gorai.007G368300 Gossypium raimondii HOM05D004855 ORTHO05D005656 3.6e-32 141.7 107 61.7
Migut.L01788 Erythranthe guttata HOM05D004855 ORTHO05D005656 4.7e-32 141.4 108 62.0
Medtr1g112020 Medicago truncatula HOM05D004855 ORTHO05D005656 6.1e-32 141.0 108 66.7
TPR.G2466 Trifolium pratense HOM05D004855 ORTHO05D005656 6.1e-32 141.0 117 60.7
AL7G35690 Arabidopsis lyrata HOM05D004855 ORTHO05D005656 1.0e-31 140.2 107 60.7
AT4G18590 Arabidopsis thaliana HOM05D004855 ORTHO05D005656 1.4e-31 139.8 107 60.7
CAN.G128.111 Capsicum annuum HOM05D004855 ORTHO05D005656 1.4e-31 139.8 108 61.1
ClCG10G018900 Citrullus lanatus HOM05D004855 ORTHO05D005656 1.4e-31 139.8 111 56.8
Lalb_Chr25g0288301 Lupinus albus HOM05D004855 ORTHO05D005656 1.4e-31 139.8 108 64.8
MELO3C009479.2 Cucumis melo HOM05D004855 ORTHO05D005656 1.8e-31 139.4 107 57.0
Migut.J01024 Erythranthe guttata HOM05D004855 ORTHO05D005656 2.3e-31 139.0 108 58.3
Lj1g0021036 Lotus japonicus HOM05D004855 ORTHO05D005656 2.3e-31 139.0 108 61.1
Oeu047859.1 Olea europaea HOM05D004855 ORTHO05D005656 2.3e-31 139.0 108 61.1
TPR.G20467 Trifolium pratense HOM05D004855 ORTHO05D005656 2.3e-31 139.0 108 64.8
RcHm_v2.0_Chr3g0473901 Rosa chinensis HOM05D004855 ORTHO05D005656 3.0e-31 138.7 108 59.3
SGA_v2.0_scaffold31G12906 Striga asiatica HOM05D004855 ORTHO05D005656 3.0e-31 138.7 103 61.2
THA.LOC104804847 Tarenaya hassleriana HOM05D004855 ORTHO05D005656 3.0e-31 138.7 107 59.8
Aa31LG6G1320 Aethionema arabicum HOM05D004855 ORTHO05D005656 5.2e-31 137.9 107 59.8
arahy.Tifrunner.gnm1.ann1.DCW42B Arachis hypogaea HOM05D004855 ORTHO05D005656 5.2e-31 137.9 109 59.6
THA.LOC104805250 Tarenaya hassleriana HOM05D004855 ORTHO05D005656 5.2e-31 137.9 107 57.9
Carub.0007s2265 Capsella rubella HOM05D004855 ORTHO05D005656 8.8e-31 137.1 107 58.9
CAN.G397.61 Capsicum annuum HOM05D004855 ORTHO05D005656 8.8e-31 137.1 107 59.8
AUR62030671 Chenopodium quinoa HOM05D004855 ORTHO05D005656 8.8e-31 137.1 108 60.2
CsaV3_3G037350 Cucumis sativus L. HOM05D004855 ORTHO05D005656 8.8e-31 137.1 107 57.0
PGR142G1385 Punica granatum HOM05D004855 ORTHO05D005656 8.8e-31 137.1 107 58.9
Sc20g0006340 Simmondsia chinensis HOM05D004855 ORTHO05D005656 8.8e-31 137.1 107 57.0
Thhalv10026639m.g Eutrema salsugineum HOM05D004855 ORTHO05D005656 1.5e-30 136.3 107 59.8
Medtr1g112040 Medicago truncatula HOM05D004855 ORTHO05D005656 1.5e-30 136.3 108 63.9
Sopen10g031710 Solanum pennellii HOM05D004855 ORTHO05D005656 2.0e-30 136.0 108 57.4
TPR.G762 Trifolium pratense HOM05D004855 ORTHO05D005656 2.0e-30 136.0 108 63.9
BcaC09g51486 Brassica carinata HOM05D004855 ORTHO05D005656 2.6e-30 135.6 109 57.8
MBI18_g09594_MAGBIO Magnolia biondii HOM05D004855 ORTHO05D005656 3.3e-30 135.2 107 57.9
CDE08G1222 Ceratophyllum demersum HOM05D004855 ORTHO05D005656 4.4e-30 134.8 107 55.1
FvH4_6g18910 Fragaria vesca HOM05D004855 ORTHO05D005656 5.7e-30 134.4 107 57.9
Phvul.001G191000 Phaseolus vulgaris HOM05D004855 ORTHO05D005656 5.7e-30 134.4 107 58.9
Potri.006G211900 Populus trichocarpa HOM05D004855 ORTHO05D005656 5.7e-30 134.4 108 59.3
Potri.006G212100 Populus trichocarpa HOM05D004855 ORTHO05D005656 5.7e-30 134.4 108 59.3
Ah.10g026130 Amaranthus hybridus HOM05D004855 ORTHO05D005656 7.4e-30 134.0 109 58.7
BraA01t01006Z Brassica rapa HOM05D004855 ORTHO05D005656 7.4e-30 134.0 107 58.9
BcaNung06738 Brassica carinata HOM05D004855 ORTHO05D005656 9.7e-30 133.7 109 57.8
Nitab4.5_0000692g0080 Nicotiana tabacum HOM05D004855 ORTHO05D005656 9.7e-30 133.7 108 57.4
Aqoxy4G02764 Aquilegia oxysepala HOM05D004855 ORTHO05D005656 1.3e-29 133.3 108 59.3
Sed0021085 Sechium edule HOM05D004855 ORTHO05D005656 1.3e-29 133.3 107 57.0
FAN02G3816 Fragaria x ananassa HOM05D004855 ORTHO05D005656 1.7e-29 132.9 108 56.5
FAN05G0016 Fragaria x ananassa HOM05D004855 ORTHO05D005656 1.7e-29 132.9 107 57.0
CANSAT78G0615 Cannabis sativa HOM05D004855 ORTHO05D005656 2.8e-29 132.1 110 57.3
PSO384G0979 Papaver somniferum HOM05D004855 ORTHO05D005656 2.8e-29 132.1 107 60.7
BcaNung03818 Brassica carinata HOM05D004855 ORTHO05D005656 4.8e-29 131.3 107 57.9
Lsat_1_v5_gn_8_77441 Lactuca sativa HOM05D004855 ORTHO05D005656 4.8e-29 131.3 108 55.6
PSO339G3393 Papaver somniferum HOM05D004855 ORTHO05D005656 4.8e-29 131.3 107 59.8
Glyma.03G196800 Glycine max HOM05D004855 ORTHO05D005656 6.3e-29 131.0 109 57.8
Sp5g09660 Schrenkiella parvula HOM05D004855 ORTHO05D005656 6.3e-29 131.0 107 56.1
Peaxi162Scf00404g00216 Petunia axillaris HOM05D004855 ORTHO05D005656 8.2e-29 130.6 107 57.0
Sopen09g004650 Solanum pennellii HOM05D004855 ORTHO05D005656 1.4e-28 129.8 107 57.9
PGSC0003DMG400008876 Solanum tuberosum HOM05D004855 ORTHO05D005656 1.4e-28 129.8 107 57.9
AL5G33410 Arabidopsis lyrata HOM05D004855 ORTHO05D005656 2.4e-28 129.0 108 55.6
AT3G52630 Arabidopsis thaliana HOM05D004855 ORTHO05D005656 2.4e-28 129.0 108 57.4
VMungo1383G3261 Vigna mungo HOM05D004855 ORTHO05D005656 5.3e-28 127.9 106 54.7
Carub.0005s1905 Capsella rubella HOM05D004855 ORTHO05D005656 7.0e-28 127.5 108 55.6
ATR0706G105 Amborella trichopoda HOM05D004855 ORTHO05D005656 2.0e-27 125.9 107 57.0
CARHR162450 Cardamine hirsuta HOM05D004855 ORTHO05D005656 2.0e-27 125.9 108 57.4
Os01g0253600 Oryza sativa ssp. japonica HOM05D004855 ORTHO05D005656 2.0e-27 125.9 107 53.3
Thhalv10010848m.g Eutrema salsugineum HOM05D004855 ORTHO05D005656 1.0e-26 123.6 107 55.1
TPR.G23346 Trifolium pratense HOM05D004855 ORTHO05D005656 1.3e-26 123.2 108 57.4
SEGI_35741 Sequoiadendron giganteum HOM05D004855 ORTHO05D005656 1.7e-26 122.9 108 51.9
Manes.10G061800 Manihot esculenta HOM05D004855 ORTHO05D005656 2.9e-26 122.1 88 63.6
Medtr7g104870 Medicago truncatula HOM05D004855 ORTHO05D005656 3.8e-26 121.7 108 54.6
Ca_09013_v3 Cicer arietinum L. HOM05D004855 ORTHO05D005656 6.5e-26 120.9 108 55.6
BcaB02g07823 Brassica carinata HOM05D004855 ORTHO05D005656 8.5e-26 120.6 109 52.3
Sp7g15440 Schrenkiella parvula HOM05D002603 ORTHO05D002907 1.9e-25 119.4 98 58.2
QL07p038661 Quercus lobata HOM05D004855 ORTHO05D005656 2.5e-25 119.0 99 57.6
MD12G1025300 Malus domestica HOM05D004855 ORTHO05D005656 3.2e-25 118.6 103 49.5
ECA236G2758 Erigeron canadensis HOM05D004855 ORTHO05D005656 7.2e-25 117.5 107 49.5
BolC1t01228H Brassica oleracea HOM05D002603 ORTHO05D002907 2.7e-24 115.5 95 56.8
COL.COLO4_29712 Corchorus olitorius HOM05D004855 ORTHO05D005656 4.7e-24 114.8 91 58.2
Psat3g032240 Pisum sativum HOM05D004855 ORTHO05D005656 4.7e-24 114.8 113 51.3
Rhsim02G0090500 Rhododendron simsii HOM05D004855 ORTHO05D005656 6.1e-24 114.4 87 60.9
Zm00001eb333640 Zea mays HOM05D004855 ORTHO05D005656 6.1e-24 114.4 107 49.5
Cpa.g.sc5.8 Carica papaya HOM05D004855 ORTHO05D005656 8.0e-24 114.0 88 63.6
Eucgr.K02554 Eucalyptus grandis HOM05D004855 ORTHO05D005656 8.0e-24 114.0 107 55.1
Zm00001eb127650 Zea mays HOM05D004855 ORTHO05D005656 1.8e-23 112.8 107 46.7
RhsimUnG0050400 Rhododendron simsii HOM05D000314 ORTHO05D000189 5.2e-23 111.3 95 54.7
Nitab4.5_0000062g0480 Nicotiana tabacum HOM05D004855 ORTHO05D005656 8.8e-23 110.5 84 60.7
Nitab4.5_0003808g0090 Nicotiana tabacum HOM05D004855 ORTHO05D005656 8.8e-23 110.5 84 60.7
Duzib093G1614 Durio zibethinus HOM05D004855 ORTHO05D005656 2.6e-22 109.0 93 55.9
Solyc10g081210.3 Solanum lycopersicum HOM05D004855 ORTHO05D005656 4.4e-22 108.2 90 54.4
vmacro07416 Vaccinium macrocarpon HOM05D004855 ORTHO05D005656 5.7e-22 107.8 85 58.8
CARHR225430 Cardamine hirsuta HOM05D004855 ORTHO05D005656 9.7e-22 107.1 104 48.1
PGSC0003DMG400028113 Solanum tuberosum HOM05D004855 ORTHO05D005656 9.7e-22 107.1 94 54.3
Rhsim03G0015500 Rhododendron simsii HOM05D004855 ORTHO05D005656 3.7e-21 105.1 89 57.3
CSS0024102 Camellia sinensis var. sinensis HOM05D004855 ORTHO05D005656 1.4e-20 103.2 86 54.7
HPP92_016958 Vanilla planifolia HOM05D004855 ORTHO05D005656 1.4e-20 103.2 87 57.5
EL10Ac2g02589 Beta vulgaris HOM05D004855 ORTHO05D005656 2.4e-20 102.4 88 53.4
CSS0041239 Camellia sinensis var. sinensis HOM05D004855 ORTHO05D005656 2.4e-20 102.4 86 54.7
A01p10600 Brassica napus HOM05D002603 ORTHO05D002907 4.1e-20 101.7 85 57.6
C01p12540 Brassica napus HOM05D002603 ORTHO05D002907 4.1e-20 101.7 85 57.6
AagrBONN_evm.TU.Sc2ySwM_362.2757 Anthoceros agrestis HOM05D004855 ORTHO05D005656 1.6e-19 99.8 100 44.0
Hund19922 Selenicereus undatus HOM05D004855 ORTHO05D005656 1.6e-19 99.8 86 55.8
Sabra06G0163300 Salix brachista HOM05D004855 ORTHO05D005656 4.5e-19 98.2 87 52.9
AagrBONN_evm.TU.Sc2ySwM_117.343 Anthoceros agrestis HOM05D004855 ORTHO05D005656 1.3e-18 96.7 100 43.0
Pp3c2_28010 Physcomitrium patens HOM05D004855 ORTHO05D005656 1.9e-17 92.8 108 42.6
Mapoly0013s0016 Marchantia polymorpha HOM05D004855 ORTHO05D005656 1.2e-16 90.1 110 38.2
Zm00001eb121860 Zea mays HOM05D003776 ORTHO05D005656 2.1e-16 89.4 85 49.4
unitig_749.g14301 Utricularia gibba HOM05D004855 ORTHO05D005656 3.6e-16 88.6 71 53.5
Peaxi162Scf00153g00093 Petunia axillaris HOM05D004855 ORTHO05D005656 4.7e-16 88.2 65 61.5
CBR_g41290 Chara braunii HOM05D004855 ORTHO05D005656 1.8e-15 86.3 111 42.3
Sed0001253 Sechium edule HOM05D004855 ORTHO05D005656 8.8e-15 84.0 93 43.0
Peaxi162Scf00153g00101 Petunia axillaris HOM05D004855 ORTHO05D005656 9.8e-14 80.5 70 57.1
SHI23843 Sapria himalayana HOM05D004855 ORTHO05D005656 4.8e-13 78.2 96 43.8
MCO11G135 Micromonas commoda HOM05D004855 ORTHO05D005656 5.4e-12 74.7 110 39.1
Psat3g176360 Pisum sativum HOM05D004855 ORTHO05D005656 2.3e-10 69.3 87 43.7
PRCOL_00005602 Prasinoderma coloniale HOM05D004855 ORTHO05D005656 1.5e-09 66.6 109 37.6
arahy.Tifrunner.gnm1.ann1.NID4K0 Arachis hypogaea HOM05D004855 ORTHO05D005656 9.5e-09 63.9 58 51.7
FvH4_2g12760 Fragaria vesca HOM05D004855 ORTHO05D005656 1.8e-07 59.7 105 31.4
Zm00001eb007300 Zea mays HOM05D004855 ORTHO05D005656 8.9e-07 57.4 64 43.8
Zm00001eb198520 Zea mays HOM05D012833 ORTHO05D005656 8.9e-07 57.4 64 43.8


User provided reference genes

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