Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0005489 Sechium edule HOM05D006540 ORTHO05D008202 2.2e-153 545.8 317 100.0
ClCG05G025710 Citrullus lanatus HOM05D006540 ORTHO05D008202 4.0e-115 418.7 274 81.0
MELO3C011955.2 Cucumis melo HOM05D006540 ORTHO05D008202 8.1e-108 394.4 275 84.7
CsaV3_5G031170 Cucumis sativus L. HOM05D006540 ORTHO05D008202 3.1e-107 392.5 276 84.1
CiPaw.05G182700 Carya illinoinensis HOM05D006540 ORTHO05D008202 9.0e-83 311.2 276 64.5
MD13G1101900 Malus domestica HOM05D006540 ORTHO05D008202 4.5e-82 308.9 282 65.6
Atru.chr11.2104 Acer truncatum HOM05D006540 ORTHO05D008202 7.6e-82 308.1 277 62.5
MD16G1102400 Malus domestica HOM05D006540 ORTHO05D008202 1.3e-81 307.4 282 64.2
Manes.13G024900 Manihot esculenta HOM05D006540 ORTHO05D008202 3.0e-78 296.2 275 63.3
Cpa.g.sc33.16 Carica papaya HOM05D006540 ORTHO05D008202 8.7e-78 294.7 282 58.9
QL03p058139 Quercus lobata HOM05D006540 ORTHO05D008202 1.5e-77 293.9 282 63.1
RcHm_v2.0_Chr4g0432921 Rosa chinensis HOM05D006540 ORTHO05D008202 2.5e-77 293.1 289 64.0
Cfa009208 Carpinus fangiana HOM05D006540 ORTHO05D008202 1.1e-75 287.7 277 62.1
FAN22G2305 Fragaria x ananassa HOM05D006540 ORTHO05D008202 1.1e-75 287.7 289 63.0
Duzib268G1404 Durio zibethinus HOM05D006540 ORTHO05D008202 2.4e-75 286.6 284 60.9
FvH4_4g25530 Fragaria vesca HOM05D006540 ORTHO05D008202 1.2e-74 284.3 289 62.3
FAN12G0822 Fragaria x ananassa HOM05D006540 ORTHO05D008202 1.2e-74 284.3 289 62.3
FAN17G1845 Fragaria x ananassa HOM05D006540 ORTHO05D008202 1.5e-74 283.9 289 62.6
SalBow2G2200 Salvia bowleyana HOM05D006540 ORTHO05D008202 1.5e-74 283.9 339 54.0
Hma1.2p1_0223F.1_g093990 Hydrangea macrophylla HOM05D006540 ORTHO05D008202 2.0e-74 283.5 279 58.8
VMungo0251G1250 Vigna mungo HOM05D006540 ORTHO05D008202 3.4e-74 282.7 274 59.9
FAN07G1259 Fragaria x ananassa HOM05D006540 ORTHO05D008202 5.8e-74 282.0 289 60.9
PGR102G2745 Punica granatum HOM05D006540 ORTHO05D008202 7.6e-74 281.6 279 59.9
Prupe.1G243900 Prunus persica HOM05D006540 ORTHO05D008202 1.0e-73 281.2 281 62.6
Phvul.003G064400 Phaseolus vulgaris HOM05D006540 ORTHO05D008202 1.7e-73 280.4 278 60.4
MSTRG.568 Avicennia marina HOM05D006540 ORTHO05D008202 2.9e-73 279.6 285 58.9
BcaC06g31063 Brassica carinata HOM05D006540 ORTHO05D008202 3.8e-73 279.3 286 63.6
Sp2g15690 Schrenkiella parvula HOM05D006540 ORTHO05D008202 1.9e-72 276.9 290 58.6
BcaC06g33900 Brassica carinata HOM05D006540 ORTHO05D008202 3.2e-72 276.2 285 58.6
Dinv24788 Davidia involucrata HOM05D006540 ORTHO05D008202 4.2e-72 275.8 283 60.4
Thhalv10004491m.g Eutrema salsugineum HOM05D006540 ORTHO05D008202 9.3e-72 274.6 290 57.9
TWI18G0987 Tripterygium wilfordii HOM05D006540 ORTHO05D008202 1.3e-70 270.8 284 63.4
Aa31LG2G5960 Aethionema arabicum HOM05D006540 ORTHO05D008202 1.8e-70 270.4 289 57.4
Ciclev10032003m.g Citrus clementina HOM05D006540 ORTHO05D008202 2.3e-70 270.0 276 58.7
Haze_12245 Corylus avellana HOM05D006540 ORTHO05D008202 2.3e-70 270.0 272 63.6
AL5G15370 Arabidopsis lyrata HOM05D006540 ORTHO05D008202 5.1e-70 268.9 286 56.6
C07p35560 Brassica napus HOM05D006540 ORTHO05D008202 5.1e-70 268.9 285 57.5
BolC7t44080H Brassica oleracea HOM05D006540 ORTHO05D008202 5.1e-70 268.9 285 57.5
Lj4g0023216 Lotus japonicus HOM05D006540 ORTHO05D008202 5.1e-70 268.9 279 55.6
AT3G26580 Arabidopsis thaliana HOM05D006540 ORTHO05D008202 6.7e-70 268.5 287 56.4
THA.LOC104825662 Tarenaya hassleriana HOM05D006540 ORTHO05D008202 8.7e-70 268.1 281 58.4
TAR622G1382 Trochodendron aralioides HOM05D006540 ORTHO05D008202 2.5e-69 266.5 281 59.4
A06p41910 Brassica napus HOM05D006540 ORTHO05D008202 3.3e-69 266.2 287 55.7
BraA06t27110Z Brassica rapa HOM05D006540 ORTHO05D008202 3.3e-69 266.2 287 55.7
Eucgr.B03288 Eucalyptus grandis HOM05D006540 ORTHO05D008202 5.7e-69 265.4 286 57.0
CANSAT35G0572 Cannabis sativa HOM05D006540 ORTHO05D008202 9.6e-69 264.6 280 58.9
CARHR147570 Cardamine hirsuta HOM05D006540 ORTHO05D008202 1.6e-68 263.8 289 56.1
Glyma.17G134500 Glycine max HOM05D006540 ORTHO05D008202 2.8e-68 263.1 277 59.9
Oeu059907.1 Olea europaea HOM05D006540 ORTHO05D008202 2.8e-68 263.1 290 55.5
Migut.K00595 Erythranthe guttata HOM05D006540 ORTHO05D008202 3.7e-68 262.7 284 54.6
vmacro16198 Vaccinium macrocarpon HOM05D006540 ORTHO05D008202 4.8e-68 262.3 282 55.0
Actinidia37429 Actinidia chinensis HOM05D006540 ORTHO05D008202 1.4e-67 260.8 280 56.1
Carub.0005s0457 Capsella rubella HOM05D006540 ORTHO05D008202 1.5e-66 257.3 284 57.7
COL.COLO4_24263 Corchorus olitorius HOM05D006540 ORTHO05D008202 2.6e-66 256.5 276 55.8
EL10Ac6g13801 Beta vulgaris HOM05D006540 ORTHO05D008202 4.5e-66 255.8 288 55.9
Cc11_g15700 Coffea canephora HOM05D006540 ORTHO05D008202 4.5e-66 255.8 287 56.8
DCAR_024432 Daucus carota HOM05D006540 ORTHO05D008202 4.5e-66 255.8 271 55.0
Actinidia15092 Actinidia chinensis HOM05D006540 ORTHO05D008202 3.8e-65 252.7 279 58.8
Psat4g116680 Pisum sativum HOM05D006540 ORTHO05D008202 3.8e-65 252.7 278 59.4
Duzib248G0112 Durio zibethinus HOM05D006540 ORTHO05D008202 6.5e-65 251.9 281 59.1
Gohir.D01G150500 Gossypium hirsutum HOM05D006540 ORTHO05D008202 1.9e-64 250.4 288 60.1
Gorai.002G186600 Gossypium raimondii HOM05D006540 ORTHO05D008202 1.9e-64 250.4 288 60.1
Thecc.02G259400 Theobroma cacao HOM05D006540 ORTHO05D008202 1.9e-64 250.4 282 62.4
Nitab4.5_0000007g0060 Nicotiana tabacum HOM05D006540 ORTHO05D008202 9.3e-64 248.1 289 58.5
arahy.Tifrunner.gnm1.ann1.NX3C69 Arachis hypogaea HOM05D006540 ORTHO05D008202 1.0e-62 244.6 289 54.0
Medtr8g069450 Medicago truncatula HOM05D006540 ORTHO05D008202 1.3e-62 244.2 282 53.9
arahy.Tifrunner.gnm1.ann1.LD9JWE Arachis hypogaea HOM05D006540 ORTHO05D008202 2.3e-62 243.4 289 53.6
PSO017G4849 Papaver somniferum HOM05D006540 ORTHO05D008202 6.7e-62 241.9 290 55.2
Nitab4.5_0003628g0010 Nicotiana tabacum HOM05D006540 ORTHO05D008202 1.1e-61 241.1 287 57.8
PGSC0003DMG400018605 Solanum tuberosum HOM05D006540 ORTHO05D008202 1.1e-61 241.1 287 55.7
Gohir.A01G159600 Gossypium hirsutum HOM05D006540 ORTHO05D008202 1.5e-61 240.7 284 61.3
TAR374G0845 Trochodendron aralioides HOM05D006540 ORTHO05D008202 2.5e-61 240.0 281 60.1
Rhsim12G0110600 Rhododendron simsii HOM05D006540 ORTHO05D008202 7.4e-61 238.4 286 55.9
Ah.03g133040 Amaranthus hybridus HOM05D006540 ORTHO05D008202 1.6e-60 237.3 288 53.5
AUR62024282 Chenopodium quinoa HOM05D006540 ORTHO05D008202 2.8e-60 236.5 278 56.5
Ca_22583_v3 Cicer arietinum L. HOM05D006540 ORTHO05D008202 4.8e-60 235.7 277 54.5
Sopen05g008320 Solanum pennellii HOM05D006540 ORTHO05D008202 8.2e-60 235.0 292 58.9
Sc04g0009450 Simmondsia chinensis HOM05D006540 ORTHO05D008202 5.3e-59 232.3 286 55.6
Aqoxy3G01202 Aquilegia oxysepala HOM05D006540 ORTHO05D008202 6.9e-59 231.9 280 52.5
Sabra13G0070200 Salix brachista HOM05D006540 ORTHO05D008202 1.2e-58 231.1 271 53.9
Lj6A811T79 Lonicera japonica HOM05D006540 ORTHO05D008202 2.0e-58 230.3 291 49.8
Potri.013G090000 Populus trichocarpa HOM05D006540 ORTHO05D008202 2.0e-58 230.3 270 53.3
vmacro01127 Vaccinium macrocarpon HOM05D006540 ORTHO05D008202 7.7e-58 228.4 278 48.9
Lalb_Chr05g0228421 Lupinus albus HOM05D006540 ORTHO05D008202 3.8e-57 226.1 284 55.6
Rhsim12G0041000 Rhododendron simsii HOM05D006540 ORTHO05D008202 3.8e-57 226.1 291 49.8
MBI10_g13027_MAGBIO Magnolia biondii HOM05D006540 ORTHO05D008202 1.9e-56 223.8 300 56.7
Lsat_1_v5_gn_8_152220 Lactuca sativa HOM05D006540 ORTHO05D008202 5.5e-56 222.2 296 55.1
PSO478G4529 Papaver somniferum HOM05D006540 ORTHO05D008202 5.5e-56 222.2 290 47.9
Peaxi162Scf00128g00138 Petunia axillaris HOM05D006540 ORTHO05D008202 5.5e-56 222.2 291 49.1
CDE02G2769 Ceratophyllum demersum HOM05D006540 ORTHO05D008202 9.4e-56 221.5 274 52.2
CSS0000303 Camellia sinensis var. sinensis HOM05D006540 ORTHO05D008202 2.1e-55 220.3 292 57.5
CDE09G1037 Ceratophyllum demersum HOM05D006540 ORTHO05D008202 2.1e-55 220.3 274 52.6
CAN.G832.5 Capsicum annuum HOM05D006540 ORTHO05D008202 6.1e-55 218.8 291 56.0
ATR0686G190 Amborella trichopoda HOM05D006540 ORTHO05D008202 1.0e-54 218.0 221 62.4
unitig_21.g20872 Utricularia gibba HOM05D006540 ORTHO05D008202 8.8e-54 214.9 261 51.3
Nn4g22628 Nelumbo nucifera HOM05D006540 ORTHO05D008202 2.6e-53 213.4 116 90.5
AUR62005459 Chenopodium quinoa HOM05D006540 ORTHO05D008202 3.3e-53 213.0 278 53.2
GSVIVG01004073001 Vitis vinifera HOM05D006540 ORTHO05D008202 2.2e-52 210.3 128 82.0
TPR.G17765 Trifolium pratense HOM05D006540 ORTHO05D008202 1.1e-51 208.0 286 49.0
BcaB01g00564 Brassica carinata HOM05D006540 ORTHO05D008202 2.4e-51 206.8 218 55.0
HanXRQChr08g0208131 Helianthus annuus HOM05D006540 ORTHO05D008202 8.5e-49 198.4 309 51.8
ECA233G5619 Erigeron canadensis HOM05D006540 ORTHO05D008202 5.5e-48 195.7 215 53.5
HPP92_002022 Vanilla planifolia HOM05D006540 ORTHO05D008202 3.0e-46 189.9 130 70.8
Zm00001eb096140 Zea mays HOM05D006540 ORTHO05D008202 7.4e-45 185.3 116 77.6
Os03g0428800 Oryza sativa ssp. japonica HOM05D006540 ORTHO05D008202 1.8e-43 180.6 129 69.8
Mapoly0037s0067 Marchantia polymorpha HOM05D006540 ORTHO05D008202 1.4e-38 164.5 151 61.6
AagrBONN_evm.TU.Sc2ySwM_340.367 Anthoceros agrestis HOM05D006540 ORTHO05D008202 2.0e-37 160.6 148 54.1
SMO347G0417 Selaginella moellendorffii HOM05D006540 ORTHO05D008202 2.2e-36 157.1 109 67.0
SEGI_37038 Sequoiadendron giganteum HOM05D006540 ORTHO05D008202 2.0e-34 150.6 105 64.8
Pp3c27_6670 Physcomitrium patens HOM05D006540 ORTHO05D008202 4.2e-32 142.9 117 53.8
Cre12.g528050 Chlamydomonas reinhardtii HOM05D006540 ORTHO05D008202 2.6e-21 107.1 114 45.6
CBR_g8379 Chara braunii HOM05D006540 ORTHO05D008202 4.3e-16 89.7 67 58.2
RcHm_v2.0_Chr5g0067811 Rosa chinensis HOM05D006540 ORTHO05D008202 1.2e-15 88.2 49 85.7
MCO07G599 Micromonas commoda HOM05D006540 ORTHO05D008202 1.6e-15 87.8 119 40.3
PRCOL_00004949 Prasinoderma coloniale HOM05D006540 ORTHO05D008202 1.8e-11 74.3 109 36.7
unitig_744.g24293 Utricularia gibba HOM05D006540 ORTHO05D008202 2.7e-10 70.5 44 68.2
TAR625G0150 Trochodendron aralioides HOM05D006540 ORTHO05D008202 4.6e-10 69.7 97 50.5
QL04p066147 Quercus lobata HOM05D006540 ORTHO05D008202 2.5e-08 63.9 72 55.6


User provided reference genes

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