Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0005209 Sechium edule HOM05D005226 ORTHO05D004666 2.4e-57 225.3 115 100.0
ClCG01G022050 Citrullus lanatus HOM05D005226 ORTHO05D004666 3.2e-46 188.3 115 85.2
CsaV3_6G049110 Cucumis sativus L. HOM05D005226 ORTHO05D004666 1.8e-41 172.6 115 78.3
MELO3C007384.2 Cucumis melo HOM05D005226 ORTHO05D004666 2.2e-39 165.6 115 75.7
Gohir.A05G169600 Gossypium hirsutum HOM05D005226 ORTHO05D004666 4.1e-25 118.2 93 67.7
COL.COLO4_31758 Corchorus olitorius HOM05D005226 ORTHO05D004666 9.0e-25 117.1 104 57.7
Gorai.009G178000 Gossypium raimondii HOM05D005226 ORTHO05D004666 9.0e-25 117.1 93 66.7
Duzib235G0113 Durio zibethinus HOM05D005226 ORTHO05D004666 7.6e-24 114.0 104 57.7
Gohir.D05G172800 Gossypium hirsutum HOM05D005226 ORTHO05D004666 7.6e-24 114.0 93 65.6
Duzib160G0401 Durio zibethinus HOM05D005226 ORTHO05D004666 2.9e-23 112.1 108 59.3
Thecc.06G219100 Theobroma cacao HOM05D005226 ORTHO05D004666 3.8e-23 111.7 105 59.0
FAN25G2807 Fragaria x ananassa HOM05D005226 ORTHO05D004666 6.5e-23 110.9 95 58.9
Prupe.4G022200 Prunus persica HOM05D005226 ORTHO05D004666 6.5e-23 110.9 95 61.1
FvH4_3g02270 Fragaria vesca HOM05D005226 ORTHO05D004666 8.4e-23 110.5 95 58.9
RcHm_v2.0_Chr5g0003391 Rosa chinensis HOM05D005226 ORTHO05D004666 1.4e-22 109.8 95 58.9
Duzib192G0836 Durio zibethinus HOM05D005226 ORTHO05D004666 7.2e-22 107.5 105 57.1
Thecc.06G087600 Theobroma cacao HOM05D005226 ORTHO05D004666 4.6e-21 104.8 93 62.4
Glyma.13G205400 Glycine max HOM05D005226 ORTHO05D004666 7.9e-21 104.0 109 51.4
Gohir.A10G013400 Gossypium hirsutum HOM05D005226 ORTHO05D004666 1.0e-20 103.6 95 56.8
TPR.G7637 Trifolium pratense HOM05D005226 ORTHO05D004666 2.3e-20 102.4 103 50.5
Gohir.D10G013300 Gossypium hirsutum HOM05D005226 ORTHO05D004666 3.9e-20 101.7 95 55.8
Gorai.011G015000 Gossypium raimondii HOM05D005226 ORTHO05D004666 3.9e-20 101.7 95 55.8
VMungo0540G0286 Vigna mungo HOM05D005226 ORTHO05D004666 3.9e-20 101.7 111 47.7
Glyma.15G107000 Glycine max HOM05D005226 ORTHO05D004666 6.7e-20 100.9 108 50.0
Medtr2g022960 Medicago truncatula HOM05D005226 ORTHO05D004666 8.7e-20 100.5 103 47.6
CANSAT56G2875 Cannabis sativa HOM05D005226 ORTHO05D004666 1.9e-19 99.4 111 45.9
MD05G1344200 Malus domestica HOM05D005226 ORTHO05D004666 1.9e-19 99.4 96 57.3
MD00G1206700 Malus domestica HOM05D005226 ORTHO05D004666 2.5e-19 99.0 106 53.8
MD10G1320200 Malus domestica HOM05D005226 ORTHO05D004666 2.5e-19 99.0 106 53.8
Ciclev10017536m.g Citrus clementina HOM05D005226 ORTHO05D004666 7.4e-19 97.4 106 50.9
Lj6g0027274 Lotus japonicus HOM05D005226 ORTHO05D004666 1.3e-18 96.7 103 47.6
Phvul.006G150300 Phaseolus vulgaris HOM05D005226 ORTHO05D004666 1.6e-18 96.3 109 47.7
TAR627G0695 Trochodendron aralioides HOM05D005226 ORTHO05D004666 1.6e-18 96.3 106 54.7
Haze_06787 Corylus avellana HOM05D005226 ORTHO05D004666 2.2e-18 95.9 110 50.9
Eucgr.E04074 Eucalyptus grandis HOM05D005226 ORTHO05D004666 2.8e-18 95.5 109 47.7
QL05p073519 Quercus lobata HOM05D005226 ORTHO05D004666 4.8e-18 94.7 95 52.6
QL05p073756 Quercus lobata HOM05D005226 ORTHO05D004666 4.8e-18 94.7 95 52.6
CiPaw.09G090600 Carya illinoinensis HOM05D005226 ORTHO05D004666 6.3e-18 94.4 98 55.1
Manes.16G008100 Manihot esculenta HOM05D005226 ORTHO05D004666 6.3e-18 94.4 94 54.3
Cfa000235 Carpinus fangiana HOM05D005226 ORTHO05D004666 1.1e-17 93.6 109 52.3
MELO3C002462.2 Cucumis melo HOM05D005226 ORTHO05D004666 3.1e-17 92.0 109 47.7
Sabra04G0009100 Salix brachista HOM05D005226 ORTHO05D004666 4.1e-17 91.7 90 55.6
Lalb_Chr15g0087551 Lupinus albus HOM05D005226 ORTHO05D004666 6.9e-17 90.9 106 43.4
TWI38G0534 Tripterygium wilfordii HOM05D005226 ORTHO05D004666 1.2e-16 90.1 107 48.6
Gohir.D06G153975 Gossypium hirsutum HOM05D005226 ORTHO05D004666 1.5e-16 89.7 93 52.7
Gorai.010G180000 Gossypium raimondii HOM05D005226 ORTHO05D004666 1.5e-16 89.7 93 51.6
Sed0011520 Sechium edule HOM05D005226 ORTHO05D004666 1.5e-16 89.7 108 47.2
Sed0027353 Sechium edule HOM05D005226 ORTHO05D004666 1.5e-16 89.7 115 47.0
ClCG03G004790 Citrullus lanatus HOM05D005226 ORTHO05D004666 2.6e-16 89.0 95 52.6
CsaV3_1G010830 Cucumis sativus L. HOM05D005226 ORTHO05D004666 2.6e-16 89.0 109 46.8
Aqoxy1G03603 Aquilegia oxysepala HOM05D005226 ORTHO05D004666 3.4e-16 88.6 100 49.0
Cc09_g01800 Coffea canephora HOM05D005226 ORTHO05D004666 3.4e-16 88.6 108 44.4
Haze_09878 Corylus avellana HOM05D005226 ORTHO05D004666 7.7e-16 87.4 104 51.9
Dinv20040 Davidia involucrata HOM05D005226 ORTHO05D004666 7.7e-16 87.4 95 53.7
TAR624G0719 Trochodendron aralioides HOM05D005226 ORTHO05D004666 1.0e-15 87.0 107 46.7
Gohir.A06G148050 Gossypium hirsutum HOM05D005226 ORTHO05D004666 1.7e-15 86.3 93 49.5
Eucgr.D01311 Eucalyptus grandis HOM05D005226 ORTHO05D004666 2.2e-15 85.9 109 48.6
Eucgr.E04071 Eucalyptus grandis HOM05D005226 ORTHO05D004666 2.2e-15 85.9 109 45.0
Eucgr.E04072 Eucalyptus grandis HOM05D005226 ORTHO05D004666 2.9e-15 85.5 97 49.5
Potri.011G002100 Populus trichocarpa HOM05D005226 ORTHO05D004666 2.9e-15 85.5 88 55.7
Nn5g29365 Nelumbo nucifera HOM05D005226 ORTHO05D004666 6.5e-15 84.3 106 46.2
Potri.004G016800 Populus trichocarpa HOM05D005226 ORTHO05D004666 6.5e-15 84.3 85 55.3
Nn1g03549 Nelumbo nucifera HOM05D005226 ORTHO05D004666 8.5e-15 84.0 103 47.6
Eucgr.D01314 Eucalyptus grandis HOM05D005226 ORTHO05D004666 1.4e-14 83.2 109 45.9
CiPaw.10G070100 Carya illinoinensis HOM05D005226 ORTHO05D004666 1.9e-14 82.8 90 51.1
Eucgr.L02166 Eucalyptus grandis HOM05D005226 ORTHO05D004666 4.2e-14 81.6 109 46.8
Oeu051213.1 Olea europaea HOM05D005226 ORTHO05D004666 4.2e-14 81.6 87 47.1
Cfa021903 Carpinus fangiana HOM05D005226 ORTHO05D004666 9.4e-14 80.5 98 51.0
PGR004G1778 Punica granatum HOM05D005226 ORTHO05D004666 9.4e-14 80.5 98 42.9
PGR042G2779 Punica granatum HOM05D005226 ORTHO05D004666 9.4e-14 80.5 99 45.5
CAN.G569.14 Capsicum annuum HOM05D005226 ORTHO05D004666 1.2e-13 80.1 96 41.7
Migut.M01309 Erythranthe guttata HOM05D005226 ORTHO05D004666 1.2e-13 80.1 104 45.2
Solyc02g080450.1 Solanum lycopersicum HOM05D005226 ORTHO05D004666 1.6e-13 79.7 93 45.2
Sopen02g025140 Solanum pennellii HOM05D005226 ORTHO05D004666 1.6e-13 79.7 93 45.2
HanXRQChr16g0515991 Helianthus annuus HOM05D005226 ORTHO05D004666 2.7e-13 79.0 87 47.1
PGSC0003DMG400004522 Solanum tuberosum HOM05D005226 ORTHO05D004666 2.7e-13 79.0 90 45.6
PSO210G5560 Papaver somniferum HOM05D005226 ORTHO05D004666 3.6e-13 78.6 116 41.4
Rhsim02G0108700 Rhododendron simsii HOM05D005226 ORTHO05D004666 6.1e-13 77.8 82 51.2
Rhsim02G0109500 Rhododendron simsii HOM05D005226 ORTHO05D004666 6.1e-13 77.8 82 51.2
Hma1.2p1_1142F.1_g260990 Hydrangea macrophylla HOM05D005226 ORTHO05D004666 7.9e-13 77.4 92 46.7
Lalb_Chr18g0056301 Lupinus albus HOM05D005226 ORTHO05D004666 1.0e-12 77.0 106 39.6
Lsat_1_v5_gn_4_59601 Lactuca sativa HOM05D005226 ORTHO05D004666 1.4e-12 76.6 83 47.0
SGA_v2.0_scaffold4G01918 Striga asiatica HOM05D005226 ORTHO05D004666 3.0e-12 75.5 106 40.6
BcaNung04807 Brassica carinata HOM05D005226 ORTHO05D004666 3.9e-12 75.1 116 37.9
PSO832G1518 Papaver somniferum HOM05D005226 ORTHO05D004666 3.9e-12 75.1 98 42.9
Atru.chr10.2207 Acer truncatum HOM05D005226 ORTHO05D004666 5.1e-12 74.7 113 39.8
BolC5t29718H Brassica oleracea HOM05D005226 ORTHO05D004666 6.7e-12 74.3 116 37.9
DCAR_004212 Daucus carota HOM05D005226 ORTHO05D004666 6.7e-12 74.3 96 47.9
Nitab4.5_0003254g0050 Nicotiana tabacum HOM05D005226 ORTHO05D004666 6.7e-12 74.3 96 44.8
Glyma.18G063800 Glycine max HOM05D005226 ORTHO05D004666 8.8e-12 73.9 68 55.9
ECA234G1355 Erigeron canadensis HOM05D005226 ORTHO05D004666 1.1e-11 73.6 83 47.0
PGSC0003DMG400016491 Solanum tuberosum HOM05D005226 ORTHO05D004666 1.5e-11 73.2 86 45.3
MSTRG.13145 Avicennia marina HOM05D005226 ORTHO05D004666 2.0e-11 72.8 64 53.1
A06p08210 Brassica napus HOM05D005226 ORTHO05D004666 3.3e-11 72.0 116 37.9
BraA06t24021Z Brassica rapa HOM05D005226 ORTHO05D004666 3.3e-11 72.0 116 37.9
Carub.0001s1129 Capsella rubella HOM05D005226 ORTHO05D004666 4.3e-11 71.6 84 44.0
Aqoxy4G01362 Aquilegia oxysepala HOM05D005226 ORTHO05D004666 5.7e-11 71.2 67 55.2
BcaC05g25032 Brassica carinata HOM05D005226 ORTHO05D004666 5.7e-11 71.2 117 36.8
CARHR011960 Cardamine hirsuta HOM05D005226 ORTHO05D004666 5.7e-11 71.2 116 37.9
Thhalv10009573m.g Eutrema salsugineum HOM05D005226 ORTHO05D004666 5.7e-11 71.2 117 38.5
MBI18_g02740_MAGBIO Magnolia biondii HOM05D005226 ORTHO05D004666 5.7e-11 71.2 106 39.6
THA.LOC104818840 Tarenaya hassleriana HOM05D005226 ORTHO05D004666 5.7e-11 71.2 74 47.3
Medtr3g463740 Medicago truncatula HOM05D005226 ORTHO05D004666 7.4e-11 70.9 62 56.5
AT1G11655 Arabidopsis thaliana HOM05D005226 ORTHO05D004666 9.7e-11 70.5 115 36.5
C08p48100 Brassica napus HOM05D005226 ORTHO05D004666 9.7e-11 70.5 116 37.1
A09p64400 Brassica napus HOM05D005226 ORTHO05D004666 1.3e-10 70.1 116 37.9
C05p09770 Brassica napus HOM05D005226 ORTHO05D004666 1.3e-10 70.1 116 37.1
BraA09t41784Z Brassica rapa HOM05D005226 ORTHO05D004666 1.3e-10 70.1 116 37.9
SGA_v2.0_scaffold89G27461 Striga asiatica HOM05D005226 ORTHO05D004666 1.3e-10 70.1 111 38.7
Rhsim02G0108200 Rhododendron simsii HOM05D005226 ORTHO05D004666 1.7e-10 69.7 82 47.6
AL1G22790 Arabidopsis lyrata HOM05D005226 ORTHO05D004666 2.2e-10 69.3 115 37.4
DCAR_008143 Daucus carota HOM05D005226 ORTHO05D004666 2.2e-10 69.3 96 42.7
Nitab4.5_0000005g0440 Nicotiana tabacum HOM05D005226 ORTHO05D004666 2.2e-10 69.3 103 40.8
Nitab4.5_0006137g0040 Nicotiana tabacum HOM05D005226 ORTHO05D004666 2.2e-10 69.3 102 42.2
BcaB01g02575 Brassica carinata HOM05D009543 ORTHO05D004666 3.7e-10 68.6 89 41.6
Oeu033894.1 Olea europaea HOM05D005226 ORTHO05D004666 4.8e-10 68.2 85 44.7
Rhsim02G0109000 Rhododendron simsii HOM05D005226 ORTHO05D004666 4.8e-10 68.2 78 47.4
BcaB08g37410 Brassica carinata HOM05D005226 ORTHO05D004666 8.2e-10 67.4 105 38.1
unitig_26.g9388 Utricularia gibba HOM05D005226 ORTHO05D004666 1.1e-09 67.0 109 33.0
BcaC07g41768 Brassica carinata HOM05D005226 ORTHO05D004666 1.4e-09 66.6 85 42.4
arahy.Tifrunner.gnm1.ann1.0GES1T Arachis hypogaea HOM05D005226 ORTHO05D004666 1.8e-09 66.2 64 56.2
arahy.Tifrunner.gnm1.ann1.1P1WAU Arachis hypogaea HOM05D005226 ORTHO05D004666 1.8e-09 66.2 64 56.2
Nitab4.5_0000389g0060 Nicotiana tabacum HOM05D005226 ORTHO05D004666 2.4e-09 65.9 92 42.4
SalBow8G4932 Salvia bowleyana HOM05D005226 ORTHO05D004666 2.4e-09 65.9 87 41.4
arahy.Tifrunner.gnm1.ann1.89FC4C Arachis hypogaea HOM05D005226 ORTHO05D004666 3.1e-09 65.5 85 44.7
Peaxi162Scf00565g00036 Petunia axillaris HOM05D005226 ORTHO05D004666 4.1e-09 65.1 95 42.1
BcaC07g38677 Brassica carinata HOM05D005226 ORTHO05D004666 5.3e-09 64.7 117 35.0
BolC8t49112H Brassica oleracea HOM05D005226 ORTHO05D004666 5.3e-09 64.7 117 35.0
CARHR228690 Cardamine hirsuta HOM05D009543 ORTHO05D004666 5.3e-09 64.7 116 37.1
Peaxi162Scf00262g00094 Petunia axillaris HOM05D005226 ORTHO05D004666 5.3e-09 64.7 81 45.7
AL6G48230 Arabidopsis lyrata HOM05D009543 ORTHO05D004666 6.9e-09 64.3 78 44.9
AT4G04745 Arabidopsis thaliana HOM05D009543 ORTHO05D004666 6.9e-09 64.3 78 44.9
A08p33360 Brassica napus HOM05D005226 ORTHO05D004666 6.9e-09 64.3 116 37.9
THA.LOC104806304 Tarenaya hassleriana HOM05D005226 ORTHO05D004666 6.9e-09 64.3 76 44.7
TPR.G21187 Trifolium pratense HOM05D005226 ORTHO05D004666 6.9e-09 64.3 62 53.2
Thhalv10029169m.g Eutrema salsugineum HOM05D009543 ORTHO05D004666 1.2e-08 63.5 78 43.6
C03p36430 Brassica napus HOM05D009543 ORTHO05D004666 1.5e-08 63.2 70 45.7
BolC3t15955H Brassica oleracea HOM05D009543 ORTHO05D004666 1.5e-08 63.2 70 45.7
Peaxi162Scf00565g00021 Petunia axillaris HOM05D005226 ORTHO05D004666 1.5e-08 63.2 68 47.1
Aa31LG1G3110 Aethionema arabicum HOM05D005226 ORTHO05D004666 2.0e-08 62.8 82 40.2
A03p30180 Brassica napus HOM05D009543 ORTHO05D004666 2.6e-08 62.4 70 44.3
BraA03t12202Z Brassica rapa HOM05D009543 ORTHO05D004666 2.6e-08 62.4 70 44.3
CARHR252810 Cardamine hirsuta HOM05D009543 ORTHO05D004666 2.6e-08 62.4 78 43.6
BraA01t01269Z Brassica rapa HOM05D009543 ORTHO05D004666 3.4e-08 62.0 83 39.8
BcaC09g51183 Brassica carinata HOM05D009543 ORTHO05D004666 4.5e-08 61.6 83 39.8
C01p15970 Brassica napus HOM05D009543 ORTHO05D004666 4.5e-08 61.6 83 39.8
BolC1t01557H Brassica oleracea HOM05D009543 ORTHO05D004666 4.5e-08 61.6 83 39.8
BraA08t35253Z Brassica rapa HOM05D005226 ORTHO05D004666 4.5e-08 61.6 116 37.1
C08p14770 Brassica napus HOM05D005226 ORTHO05D004666 7.7e-08 60.8 86 38.4
BcaB03g13244 Brassica carinata HOM05D005226 ORTHO05D004666 1.0e-07 60.5 87 39.1
AL7G31950 Arabidopsis lyrata HOM05D009543 ORTHO05D004666 1.3e-07 60.1 75 42.7
A09p26130 Brassica napus HOM05D009543 ORTHO05D004666 2.2e-07 59.3 79 41.8
BraA09t38180Z Brassica rapa HOM05D009543 ORTHO05D004666 2.2e-07 59.3 79 41.8
Carub.0006s3264 Capsella rubella HOM05D009543 ORTHO05D004666 2.2e-07 59.3 103 34.0
Sp6g04195 Schrenkiella parvula HOM05D009543 ORTHO05D004666 2.9e-07 58.9 67 44.8
BcaB01g01831 Brassica carinata HOM05D009543 ORTHO05D004666 6.5e-07 57.8 78 41.0
BcaNung02262 Brassica carinata HOM05D009543 ORTHO05D004666 6.5e-07 57.8 75 38.7
BcaC04g21321 Brassica carinata HOM05D009543 ORTHO05D004666 8.5e-07 57.4 78 41.0
C09p33170 Brassica napus HOM05D009543 ORTHO05D004666 8.5e-07 57.4 78 41.0
BolC9t56151H Brassica oleracea HOM05D009543 ORTHO05D004666 8.5e-07 57.4 78 41.0
unitig_749.g13630 Utricularia gibba HOM05D005226 ORTHO05D004666 8.5e-07 57.4 88 35.2
AT4G21902 Arabidopsis thaliana HOM05D009543 ORTHO05D004666 1.4e-06 56.6 75 38.7
ATR0752G088 Amborella trichopoda HOM05D005226 ORTHO05D004666 4.2e-06 55.1 100 42.0
EL10Ac8g20036 Beta vulgaris HOM05D005226 ORTHO05D004666 7.2e-06 54.3 72 41.7
Sp7g20070 Schrenkiella parvula HOM05D009543 ORTHO05D004666 7.2e-06 54.3 77 42.9


User provided reference genes

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