Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0005123 Sechium edule HOM05D006003 ORTHO05D007388 1.3e-199 699.5 348 100.0
MELO3C016117.2 Cucumis melo HOM05D006003 ORTHO05D007388 1.8e-169 599.4 348 84.5
ClCG07G010140 Citrullus lanatus HOM05D006003 ORTHO05D007388 1.2e-168 596.7 348 84.8
CsaV3_4G008190 Cucumis sativus L. HOM05D006003 ORTHO05D007388 3.5e-157 558.5 330 83.6
MD11G1270000 Malus domestica HOM05D006003 ORTHO05D007388 1.8e-121 439.9 309 69.9
Prupe.4G156400 Prunus persica HOM05D006003 ORTHO05D007388 6.5e-119 431.4 312 67.9
Manes.15G098700 Manihot esculenta HOM05D006003 ORTHO05D007388 3.2e-118 429.1 310 67.4
FvH4_3g17730 Fragaria vesca HOM05D006003 ORTHO05D007388 5.5e-118 428.3 309 67.0
CANSAT56G1876 Cannabis sativa HOM05D006003 ORTHO05D007388 1.6e-117 426.8 321 64.8
Gorai.002G047000 Gossypium raimondii HOM05D006003 ORTHO05D007388 2.1e-117 426.4 308 69.2
Hma1.2p1_0050F.1_g028770 Hydrangea macrophylla HOM05D006003 ORTHO05D007388 3.6e-117 425.6 311 65.9
TAR626G1650 Trochodendron aralioides HOM05D006003 ORTHO05D007388 4.7e-117 425.2 314 66.6
FAN16G0946 Fragaria x ananassa HOM05D006003 ORTHO05D007388 8.0e-117 424.5 309 67.3
Gohir.A01G047600 Gossypium hirsutum HOM05D006003 ORTHO05D007388 1.4e-116 423.7 308 68.8
Atru.chr2.1938 Acer truncatum HOM05D006003 ORTHO05D007388 5.2e-116 421.8 311 67.8
Medtr2g073350 Medicago truncatula HOM05D006003 ORTHO05D007388 1.2e-115 420.6 310 65.8
Atru.chr2.1967 Acer truncatum HOM05D006003 ORTHO05D007388 1.5e-115 420.2 311 67.8
Potri.011G104400 Populus trichocarpa HOM05D006003 ORTHO05D007388 2.0e-115 419.9 308 67.9
Sabra11G0081200 Salix brachista HOM05D006003 ORTHO05D007388 3.4e-115 419.1 307 68.4
Dinv13362 Davidia involucrata HOM05D006003 ORTHO05D007388 5.7e-115 418.3 311 65.3
TWI39G0770 Tripterygium wilfordii HOM05D006003 ORTHO05D007388 1.3e-114 417.2 311 67.5
PGR031G3165 Punica granatum HOM05D006003 ORTHO05D007388 1.7e-114 416.8 309 66.0
Thecc.07G133000 Theobroma cacao HOM05D006003 ORTHO05D007388 1.7e-114 416.8 310 67.7
Ciclev10021233m.g Citrus clementina HOM05D006003 ORTHO05D007388 2.2e-114 416.4 315 67.3
FAN25G0059 Fragaria x ananassa HOM05D006003 ORTHO05D007388 2.2e-114 416.4 324 64.5
CAN.G375.51 Capsicum annuum HOM05D006003 ORTHO05D007388 2.8e-114 416.0 313 64.9
CSS0003385 Camellia sinensis var. sinensis HOM05D006003 ORTHO05D007388 3.7e-114 415.6 310 64.5
MD11G1270100 Malus domestica HOM05D006003 ORTHO05D007388 3.7e-114 415.6 314 65.3
AUR62019651 Chenopodium quinoa HOM05D006003 ORTHO05D007388 6.3e-114 414.8 311 65.3
Nitab4.5_0003230g0040 Nicotiana tabacum HOM05D006003 ORTHO05D007388 6.3e-114 414.8 310 63.5
CSS0022288 Camellia sinensis var. sinensis HOM05D006003 ORTHO05D007388 1.8e-113 413.3 310 64.2
Cc05_g10700 Coffea canephora HOM05D006003 ORTHO05D007388 2.4e-113 412.9 313 65.2
Sabra11G0076500 Salix brachista HOM05D006003 ORTHO05D007388 2.4e-113 412.9 308 67.5
Prupe.4G156300 Prunus persica HOM05D006003 ORTHO05D007388 4.1e-113 412.1 317 64.7
GSVIVG01014095001 Vitis vinifera HOM05D006003 ORTHO05D007388 7.0e-113 411.4 314 65.9
Eucgr.F03233 Eucalyptus grandis HOM05D006003 ORTHO05D007388 2.0e-112 409.8 317 64.0
vmacro11973 Vaccinium macrocarpon HOM05D006003 ORTHO05D007388 2.0e-112 409.8 319 64.3
Glyma.12G234000 Glycine max HOM05D006003 ORTHO05D007388 3.5e-112 409.1 310 64.8
PGR083G1570 Punica granatum HOM05D006003 ORTHO05D007388 7.7e-112 407.9 311 65.3
Ca_03928_v3 Cicer arietinum L. HOM05D006003 ORTHO05D007388 1.3e-111 407.1 310 65.2
Ca_30126_v3 Cicer arietinum L. HOM05D006003 ORTHO05D007388 1.3e-111 407.1 310 65.2
Glyma.13G264900 Glycine max HOM05D006003 ORTHO05D007388 2.9e-111 406.0 311 65.3
Lj3g0003080 Lotus japonicus HOM05D006003 ORTHO05D007388 1.9e-110 403.3 309 65.0
TAR624G1186 Trochodendron aralioides HOM05D006003 ORTHO05D007388 2.5e-110 402.9 361 57.9
Lj3g0000598 Lotus japonicus HOM05D006003 ORTHO05D007388 3.3e-110 402.5 309 65.0
EL10Ac4g08418 Beta vulgaris HOM05D006003 ORTHO05D007388 1.2e-109 400.6 313 63.3
Nitab4.5_0000347g0030 Nicotiana tabacum HOM05D006003 ORTHO05D007388 1.2e-109 400.6 302 63.2
PGSC0003DMG400007060 Solanum tuberosum HOM05D006003 ORTHO05D007388 1.2e-109 400.6 313 62.3
Rhsim06G0211900 Rhododendron simsii HOM05D006003 ORTHO05D007388 1.6e-109 400.2 333 60.7
Lalb_Chr20g0109151 Lupinus albus HOM05D006003 ORTHO05D007388 2.8e-109 399.4 314 63.4
Actinidia12605 Actinidia chinensis HOM05D006003 ORTHO05D007388 3.6e-109 399.1 314 64.6
Sopen07g030420 Solanum pennellii HOM05D006003 ORTHO05D007388 8.0e-109 397.9 313 61.7
Ah.04g164020 Amaranthus hybridus HOM05D006003 ORTHO05D007388 2.3e-108 396.4 311 63.0
TPR.G12996 Trifolium pratense HOM05D006003 ORTHO05D007388 3.0e-108 396.0 275 67.3
Haze_09249 Corylus avellana HOM05D006003 ORTHO05D007388 5.2e-108 395.2 310 64.2
DCAR_019616 Daucus carota HOM05D006003 ORTHO05D007388 5.2e-108 395.2 317 63.1
Eucgr.F01368 Eucalyptus grandis HOM05D006003 ORTHO05D007388 2.6e-107 392.9 314 64.3
QL08p024148 Quercus lobata HOM05D006003 ORTHO05D007388 2.6e-107 392.9 310 63.5
Solyc07g062150.3 Solanum lycopersicum HOM05D006003 ORTHO05D007388 2.6e-107 392.9 313 61.3
Cfa019519 Carpinus fangiana HOM05D006003 ORTHO05D007388 3.4e-107 392.5 289 66.4
FAN21G1616 Fragaria x ananassa HOM05D006003 ORTHO05D007388 3.4e-107 392.5 309 63.8
HanXRQChr14g0439341 Helianthus annuus HOM05D006003 ORTHO05D007388 1.1e-105 387.5 311 62.1
HanXRQChr13g0389731 Helianthus annuus HOM05D006003 ORTHO05D007388 2.4e-105 386.3 311 62.4
Psat5g233200 Pisum sativum HOM05D006003 ORTHO05D007388 3.5e-104 382.5 310 61.0
MSTRG.6692 Avicennia marina HOM05D006003 ORTHO05D007388 4.6e-104 382.1 317 59.6
Gohir.D01G038300 Gossypium hirsutum HOM05D006003 ORTHO05D007388 7.8e-104 381.3 267 71.5
Sc16g0007750 Simmondsia chinensis HOM05D006003 ORTHO05D007388 2.3e-103 379.8 282 63.8
Cpa.g.sc77.63 Carica papaya HOM05D006003 ORTHO05D007388 3.9e-103 379.0 309 59.5
Peaxi162Scf00111g01321 Petunia axillaris HOM05D006003 ORTHO05D007388 3.3e-102 375.9 280 63.2
Oeu059254.1 Olea europaea HOM05D006003 ORTHO05D007388 1.8e-100 370.2 279 62.4
Lj8A146G66 Lonicera japonica HOM05D006003 ORTHO05D007388 5.2e-100 368.6 309 59.2
Lj1C824T4 Lonicera japonica HOM05D006003 ORTHO05D007388 1.2e-99 367.5 284 64.8
Migut.M00692 Erythranthe guttata HOM05D006003 ORTHO05D007388 1.5e-99 367.1 315 59.0
MD03G1247500 Malus domestica HOM05D006003 ORTHO05D007388 4.4e-99 365.5 275 67.3
HPP92_006378 Vanilla planifolia HOM05D006003 ORTHO05D007388 4.4e-99 365.5 311 60.5
Oeu005377.2 Olea europaea HOM05D006003 ORTHO05D007388 7.5e-99 364.8 280 62.9
Lsat_1_v5_gn_9_100380 Lactuca sativa HOM05D006003 ORTHO05D007388 6.4e-98 361.7 328 56.7
PSO541G5634 Papaver somniferum HOM05D006003 ORTHO05D007388 8.3e-98 361.3 327 56.0
PSO675G5422 Papaver somniferum HOM05D006003 ORTHO05D007388 8.3e-98 361.3 332 55.7
ECA240G1635 Erigeron canadensis HOM05D006003 ORTHO05D007388 1.9e-97 360.1 280 64.3
THA.LOC104813991 Tarenaya hassleriana HOM05D006003 ORTHO05D007388 1.2e-96 357.5 313 57.2
ATR0602G094 Amborella trichopoda HOM05D006003 ORTHO05D007388 3.5e-96 355.9 280 63.9
AL2G38990 Arabidopsis lyrata HOM05D006003 ORTHO05D007388 1.7e-95 353.6 308 57.1
Os09g0345700 Oryza sativa ssp. japonica HOM05D006003 ORTHO05D007388 1.7e-95 353.6 321 56.1
arahy.Tifrunner.gnm1.ann1.U60PIC Arachis hypogaea HOM05D006003 ORTHO05D007388 6.6e-95 351.7 309 58.3
Nn6g34421 Nelumbo nucifera HOM05D006003 ORTHO05D007388 6.6e-95 351.7 240 73.3
THA.LOC104808088 Tarenaya hassleriana HOM05D006003 ORTHO05D007388 8.6e-95 351.3 312 56.7
CARHR072080 Cardamine hirsuta HOM05D006003 ORTHO05D007388 1.5e-94 350.5 308 56.8
SGA_v2.0_scaffold181G39767 Striga asiatica HOM05D006003 ORTHO05D007388 9.5e-94 347.8 324 53.4
Carub.0002s2544 Capsella rubella HOM05D006003 ORTHO05D007388 2.8e-93 346.3 306 56.2
Thhalv10018897m.g Eutrema salsugineum HOM05D006003 ORTHO05D007388 3.6e-93 345.9 306 56.5
Sp5g33680 Schrenkiella parvula HOM05D006003 ORTHO05D007388 3.6e-93 345.9 306 56.5
SalBow8G3868 Salvia bowleyana HOM05D006003 ORTHO05D007388 1.1e-92 344.4 311 57.6
AT1G78590 Arabidopsis thaliana HOM05D006003 ORTHO05D007388 1.4e-92 344.0 308 55.8
BcaC08g47430 Brassica carinata HOM05D006003 ORTHO05D007388 3.1e-92 342.8 306 56.5
C06p52490 Brassica napus HOM05D006003 ORTHO05D007388 4.0e-92 342.4 306 56.2
Duzib268G1415 Durio zibethinus HOM05D006003 ORTHO05D007388 4.0e-92 342.4 240 71.2
unitig_62.g23076 Utricularia gibba HOM05D006003 ORTHO05D007388 4.0e-92 342.4 311 54.7
Aa31LG4G2370 Aethionema arabicum HOM05D006003 ORTHO05D007388 1.2e-91 340.9 308 56.2
BraA07t31893Z Brassica rapa HOM05D006003 ORTHO05D007388 1.2e-91 340.9 306 55.9
A07p43860 Brassica napus HOM05D006003 ORTHO05D007388 1.5e-91 340.5 306 55.9
BolC6t40268H Brassica oleracea HOM05D006003 ORTHO05D007388 5.8e-91 338.6 306 55.6
C02p35670 Brassica napus HOM05D006003 ORTHO05D007388 7.5e-91 338.2 306 56.2
A02p22240 Brassica napus HOM05D006003 ORTHO05D007388 1.3e-90 337.4 306 56.2
BolC2t09587H Brassica oleracea HOM05D006003 ORTHO05D007388 1.3e-90 337.4 306 55.9
BcaC03g15825 Brassica carinata HOM05D006003 ORTHO05D007388 1.7e-90 337.0 306 55.9
BraA02t07230Z Brassica rapa HOM05D006003 ORTHO05D007388 2.2e-90 336.7 306 56.2
SHI27565 Sapria himalayana HOM05D006003 ORTHO05D007388 3.5e-88 329.3 249 64.3
CiPaw.11G156000 Carya illinoinensis HOM05D006003 ORTHO05D007388 3.9e-87 325.9 240 68.8
MBI06_g08515_MAGBIO Magnolia biondii HOM05D006003 ORTHO05D007388 1.1e-86 324.3 279 60.2
Dinv26706 Davidia involucrata HOM05D006003 ORTHO05D007388 3.3e-86 322.8 233 68.7
BcaB05g25146 Brassica carinata HOM05D006003 ORTHO05D007388 3.6e-85 319.3 278 57.2
COL.COLO4_17472 Corchorus olitorius HOM05D006003 ORTHO05D007388 1.2e-83 314.3 310 54.8
Phvul.005G076600 Phaseolus vulgaris HOM05D006003 ORTHO05D007388 1.2e-83 314.3 311 55.0
CDE04G1397 Ceratophyllum demersum HOM05D006003 ORTHO05D007388 1.4e-81 307.4 262 59.9
CDE10G0670 Ceratophyllum demersum HOM05D000595 ORTHO05D001274 2.1e-80 303.5 265 58.5
Sc03g0010720 Simmondsia chinensis HOM05D006003 ORTHO05D007388 1.1e-78 297.7 287 51.6
SMO169G0094 Selaginella moellendorffii HOM05D006003 ORTHO05D007388 4.0e-76 289.3 276 54.3
Pp3c14_23600 Physcomitrium patens HOM05D006003 ORTHO05D007388 3.8e-74 282.7 281 50.9
Mapoly0214s0005 Marchantia polymorpha HOM05D006003 ORTHO05D007388 8.7e-71 271.6 283 50.9
CBR_g12698 Chara braunii HOM05D006003 ORTHO05D007388 1.1e-70 271.2 316 44.9
Zm00001eb098430 Zea mays HOM05D006003 ORTHO05D007388 4.2e-57 226.1 203 58.1
FAN11G1972 Fragaria x ananassa HOM05D006003 ORTHO05D007388 1.5e-54 217.6 191 55.5
MD03G1248900 Malus domestica HOM05D006003 ORTHO05D007388 4.6e-48 196.1 195 57.4
SalBow7G3240 Salvia bowleyana HOM05D006003 ORTHO05D007388 1.3e-47 194.5 168 55.4
RcHm_v2.0_Chr5g0029501 Rosa chinensis HOM05D006003 ORTHO05D007388 9.6e-46 188.3 137 63.5
MCO14G555 Micromonas commoda HOM05D006003 ORTHO05D007388 3.2e-41 173.3 282 39.4
AUR62039577 Chenopodium quinoa HOM05D006003 ORTHO05D007388 6.1e-40 169.1 109 69.7
RcHm_v2.0_Chr5g0029511 Rosa chinensis HOM05D006003 ORTHO05D007388 1.5e-35 154.5 104 73.1
Psat5g275400 Pisum sativum HOM05D006003 ORTHO05D007388 1.1e-28 131.7 115 56.5
PRCOL_00004450 Prasinoderma coloniale HOM05D006003 ORTHO05D007388 1.8e-12 77.8 297 29.3
CDE03G0511 Ceratophyllum demersum HOM05D006003 ORTHO05D007388 3.2e-09 67.0 68 57.4


User provided reference genes

Program Settings