Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0004411 Sechium edule HOM05D004681 ORTHO05D005541 2.6e-172 608.6 303 100.0
CsaV3_1G031790 Cucumis sativus L. HOM05D004681 ORTHO05D005541 9.3e-138 493.8 269 88.8
ClCG06G013520 Citrullus lanatus HOM05D004681 ORTHO05D005541 7.9e-137 490.7 269 88.8
MELO3C017439.2 Cucumis melo HOM05D004681 ORTHO05D005541 6.5e-131 471.1 269 84.8
GSVIVG01010902001 Vitis vinifera HOM05D004681 ORTHO05D005541 7.0e-101 371.3 261 65.9
TWI63G0533 Tripterygium wilfordii HOM05D004681 ORTHO05D005541 3.5e-100 369.0 263 67.7
Cfa013431 Carpinus fangiana HOM05D004681 ORTHO05D005541 1.7e-99 366.7 279 64.2
QL12p032381 Quercus lobata HOM05D004681 ORTHO05D005541 5.0e-99 365.2 266 64.7
Duzib168G0714 Durio zibethinus HOM05D004681 ORTHO05D005541 8.6e-99 364.4 264 66.3
RcHm_v2.0_Chr4g0400191 Rosa chinensis HOM05D004681 ORTHO05D005541 1.9e-98 363.2 262 67.2
Gohir.A08G017900 Gossypium hirsutum HOM05D004681 ORTHO05D005541 3.2e-98 362.5 266 64.7
Dinv25404 Davidia involucrata HOM05D004681 ORTHO05D005541 4.2e-98 362.1 277 63.5
Dinv26443 Davidia involucrata HOM05D004681 ORTHO05D005541 9.5e-98 360.9 262 66.0
Gohir.D08G028500 Gossypium hirsutum HOM05D004681 ORTHO05D005541 9.5e-98 360.9 266 64.3
Thecc.09G181200 Theobroma cacao HOM05D004681 ORTHO05D005541 9.5e-98 360.9 268 65.7
Prupe.1G079200 Prunus persica HOM05D004681 ORTHO05D005541 3.6e-97 359.0 263 64.6
Solyc07g009320.3 Solanum lycopersicum HOM05D004681 ORTHO05D005541 3.6e-97 359.0 263 67.3
Sopen07g005070 Solanum pennellii HOM05D004681 ORTHO05D005541 3.6e-97 359.0 263 67.3
Cc06_g22600 Coffea canephora HOM05D004681 ORTHO05D005541 8.0e-97 357.8 261 65.1
Duzib170G0205 Durio zibethinus HOM05D004681 ORTHO05D005541 2.3e-96 356.3 266 63.5
Atru.chr7.819 Acer truncatum HOM05D004681 ORTHO05D005541 3.0e-96 355.9 265 64.2
CiPaw.07G195100 Carya illinoinensis HOM05D004681 ORTHO05D005541 4.0e-96 355.5 260 66.2
Gorai.004G025600 Gossypium raimondii HOM05D004681 ORTHO05D005541 1.5e-95 353.6 277 62.1
CAN.G1668.9 Capsicum annuum HOM05D004681 ORTHO05D005541 3.4e-95 352.4 263 65.0
CANSAT11G1051 Cannabis sativa HOM05D004681 ORTHO05D005541 2.8e-94 349.4 264 63.3
Ciclev10008916m.g Citrus clementina HOM05D004681 ORTHO05D005541 3.7e-94 349.0 263 63.1
PGSC0003DMG400008514 Solanum tuberosum HOM05D004681 ORTHO05D005541 4.9e-94 348.6 263 65.0
SalBow7G3904 Salvia bowleyana HOM05D004681 ORTHO05D005541 1.1e-93 347.4 268 62.7
CiPaw.08G033800 Carya illinoinensis HOM05D004681 ORTHO05D005541 1.4e-93 347.1 260 65.0
Eucgr.C00132 Eucalyptus grandis HOM05D004681 ORTHO05D005541 1.8e-93 346.7 264 62.5
Actinidia06358 Actinidia chinensis HOM05D004681 ORTHO05D005541 2.4e-93 346.3 263 63.9
CSS0001946 Camellia sinensis var. sinensis HOM05D004681 ORTHO05D005541 4.1e-93 345.5 247 66.4
RcHm_v2.0_Chr7g0191541 Rosa chinensis HOM05D004681 ORTHO05D005541 5.4e-93 345.1 262 63.4
CSS0025965 Camellia sinensis var. sinensis HOM05D004681 ORTHO05D005541 7.0e-93 344.7 237 67.9
MD13G1245600 Malus domestica HOM05D004681 ORTHO05D005541 1.2e-92 344.0 261 62.8
Sc14g0001370 Simmondsia chinensis HOM05D004681 ORTHO05D005541 1.2e-92 344.0 265 61.9
Nitab4.5_0000074g0040 Nicotiana tabacum HOM05D004681 ORTHO05D005541 2.7e-92 342.8 263 64.6
Actinidia22469 Actinidia chinensis HOM05D004681 ORTHO05D005541 4.5e-92 342.0 266 61.7
Cpa.g.sc95.29 Carica papaya HOM05D004681 ORTHO05D005541 4.5e-92 342.0 266 62.0
MSTRG.10452 Avicennia marina HOM05D004681 ORTHO05D005541 6.6e-91 338.2 269 60.6
FAN12G2798 Fragaria x ananassa HOM05D004681 ORTHO05D005541 6.6e-91 338.2 265 63.0
FAN22G1928 Fragaria x ananassa HOM05D004681 ORTHO05D005541 1.5e-90 337.0 265 62.6
SGA_v2.0_scaffold41G15864 Striga asiatica HOM05D004681 ORTHO05D005541 1.5e-90 337.0 268 62.3
Peaxi162Scf00324g00718 Petunia axillaris HOM05D004681 ORTHO05D005541 1.9e-90 336.7 263 61.6
FvH4_4g07590 Fragaria vesca HOM05D004681 ORTHO05D005541 2.5e-90 336.3 265 63.0
Manes.14G161401 Manihot esculenta HOM05D004681 ORTHO05D005541 4.3e-90 335.5 245 64.9
Manes.04G060300 Manihot esculenta HOM05D004681 ORTHO05D005541 9.5e-90 334.3 245 64.1
Nitab4.5_0010281g0010 Nicotiana tabacum HOM05D004681 ORTHO05D005541 1.6e-89 333.6 263 63.5
Oeu000976.1 Olea europaea HOM05D004681 ORTHO05D005541 1.6e-89 333.6 263 61.2
HanXRQChr09g0266261 Helianthus annuus HOM05D004681 ORTHO05D005541 6.1e-89 331.6 264 59.5
SalBow7G0268 Salvia bowleyana HOM05D004681 ORTHO05D005541 1.0e-88 330.9 279 59.5
FAN17G0253 Fragaria x ananassa HOM05D004681 ORTHO05D005541 2.3e-88 329.7 264 62.1
PSO423G0181 Papaver somniferum HOM05D004681 ORTHO05D005541 3.0e-88 329.3 275 60.7
PSO079G0045 Papaver somniferum HOM05D004681 ORTHO05D005541 4.0e-88 328.9 270 62.6
MBI13_g31546_MAGBIO Magnolia biondii HOM05D004681 ORTHO05D005541 5.2e-88 328.6 274 58.4
Sp3g32480 Schrenkiella parvula HOM05D004681 ORTHO05D005541 1.2e-87 327.4 253 61.3
Ah.09g230170 Amaranthus hybridus HOM05D004681 ORTHO05D005541 7.5e-87 324.7 267 60.3
AUR62033246 Chenopodium quinoa HOM05D004681 ORTHO05D005541 7.5e-87 324.7 267 59.6
Potri.018G145508 Populus trichocarpa HOM05D004681 ORTHO05D005541 1.7e-86 323.6 274 59.5
BcaB03g16704 Brassica carinata HOM05D004681 ORTHO05D005541 4.9e-86 322.0 257 60.7
BcaC06g36518 Brassica carinata HOM05D004681 ORTHO05D005541 8.3e-86 321.2 257 60.3
PGR044G2653 Punica granatum HOM05D004681 ORTHO05D005541 1.4e-85 320.5 272 58.5
Rhsim13G0200500 Rhododendron simsii HOM05D004681 ORTHO05D005541 1.8e-85 320.1 326 51.5
A07p01650 Brassica napus HOM05D004681 ORTHO05D005541 3.2e-85 319.3 257 59.9
BraA07t27967Z Brassica rapa HOM05D004681 ORTHO05D005541 3.2e-85 319.3 257 59.9
Potri.006G077100 Populus trichocarpa HOM05D004681 ORTHO05D005541 4.1e-85 318.9 234 64.5
C07p03410 Brassica napus HOM05D004681 ORTHO05D005541 7.0e-85 318.2 257 59.9
BolC7t40740H Brassica oleracea HOM05D004681 ORTHO05D005541 7.0e-85 318.2 257 59.9
Aqoxy7G02735 Aquilegia oxysepala HOM05D004681 ORTHO05D005541 2.7e-84 316.2 266 59.4
C09p14440 Brassica napus HOM05D004681 ORTHO05D005541 2.7e-84 316.2 259 59.1
THA.LOC104819968 Tarenaya hassleriana HOM05D004681 ORTHO05D005541 3.5e-84 315.8 246 62.6
Migut.L01897 Erythranthe guttata HOM05D004681 ORTHO05D005541 5.9e-84 315.1 242 61.2
BcaB07g31622 Brassica carinata HOM05D004681 ORTHO05D005541 7.8e-84 314.7 257 59.5
Hund09046 Selenicereus undatus HOM05D004681 ORTHO05D005541 7.8e-84 314.7 261 57.5
EL10Ac8g18317 Beta vulgaris HOM05D004681 ORTHO05D005541 1.0e-83 314.3 267 58.1
BraA09t36865Z Brassica rapa HOM05D004681 ORTHO05D005541 1.0e-83 314.3 259 58.7
Lsat_1_v5_gn_4_183080 Lactuca sativa HOM05D004681 ORTHO05D005541 1.0e-83 314.3 261 59.0
A09p12190 Brassica napus HOM05D004681 ORTHO05D005541 3.0e-83 312.8 257 58.8
ECA232G3088 Erigeron canadensis HOM05D004681 ORTHO05D005541 3.0e-83 312.8 263 58.9
BcaC04g22869 Brassica carinata HOM05D004681 ORTHO05D005541 3.9e-83 312.4 271 57.2
VMungo1215G0406 Vigna mungo HOM05D004681 ORTHO05D005541 1.9e-82 310.1 274 56.6
HanXRQChr10g0297571 Helianthus annuus HOM05D004681 ORTHO05D005541 2.5e-82 309.7 281 54.1
AL3G52840 Arabidopsis lyrata HOM05D004681 ORTHO05D005541 4.3e-82 308.9 260 58.5
Aa31LG8G16140 Aethionema arabicum HOM05D004681 ORTHO05D005541 5.6e-82 308.5 251 58.6
BolC9t54347H Brassica oleracea HOM05D004681 ORTHO05D005541 7.3e-82 308.1 272 57.0
Sabra06G0058400 Salix brachista HOM05D004681 ORTHO05D005541 1.2e-81 307.4 258 58.1
unitig_578.g16069 Utricularia gibba HOM05D004681 ORTHO05D005541 1.2e-81 307.4 269 56.1
Carub.0003s3332 Capsella rubella HOM05D004681 ORTHO05D005541 1.6e-81 307.0 258 58.1
Thhalv10022785m.g Eutrema salsugineum HOM05D004681 ORTHO05D005541 2.1e-81 306.6 255 58.8
Glyma.15G164000 Glycine max HOM05D004681 ORTHO05D005541 3.6e-81 305.8 264 57.2
AT2G19080 Arabidopsis thaliana HOM05D004681 ORTHO05D005541 1.1e-80 304.3 251 58.6
Glyma.13G099400 Glycine max HOM05D004681 ORTHO05D005541 3.1e-80 302.8 251 59.4
CARHR109600 Cardamine hirsuta HOM05D004681 ORTHO05D005541 4.0e-80 302.4 285 52.6
Glyma.09G057900 Glycine max HOM05D004681 ORTHO05D005541 6.8e-80 301.6 267 55.8
Phvul.003G142900 Phaseolus vulgaris HOM05D004681 ORTHO05D005541 6.8e-80 301.6 262 56.1
arahy.Tifrunner.gnm1.ann1.K04ERL Arachis hypogaea HOM05D004681 ORTHO05D005541 2.6e-79 299.7 255 57.6
arahy.Tifrunner.gnm1.ann1.L4KBSE Arachis hypogaea HOM05D004681 ORTHO05D005541 9.8e-79 297.7 253 57.7
SGA_v2.0_scaffold21G09637 Striga asiatica HOM05D004681 ORTHO05D005541 9.8e-79 297.7 281 56.9
ATR0626G278 Amborella trichopoda HOM05D004681 ORTHO05D005541 1.3e-78 297.4 239 57.7
Lj7A127G13 Lonicera japonica HOM05D004681 ORTHO05D005541 1.3e-78 297.4 217 65.4
Lj6g0005497 Lotus japonicus HOM05D004681 ORTHO05D005541 1.4e-77 293.9 252 57.1
Lalb_Chr15g0084091 Lupinus albus HOM05D004681 ORTHO05D005541 3.2e-77 292.7 256 57.4
Medtr4g127630 Medicago truncatula HOM05D004681 ORTHO05D005541 9.2e-77 291.2 273 55.3
Lj4g0016729 Lotus japonicus HOM05D004681 ORTHO05D005541 3.5e-76 289.3 252 57.1
Glyma.17G060700 Glycine max HOM05D004681 ORTHO05D005541 3.9e-75 285.8 252 56.3
Phvul.009G237800 Phaseolus vulgaris HOM05D004681 ORTHO05D005541 5.0e-75 285.4 251 56.6
Psat0s736g0040 Pisum sativum HOM05D004681 ORTHO05D005541 6.6e-75 285.0 248 56.5
Lalb_Chr12g0199511 Lupinus albus HOM05D004681 ORTHO05D005541 2.5e-74 283.1 264 54.9
Medtr2g036910 Medicago truncatula HOM05D004681 ORTHO05D005541 2.5e-74 283.1 255 54.5
TPR.G9028 Trifolium pratense HOM05D004681 ORTHO05D005541 2.5e-74 283.1 234 58.1
Ca_21245_v3 Cicer arietinum L. HOM05D004410 ORTHO05D006134 1.6e-73 280.4 254 55.9
VMungo1309G2393 Vigna mungo HOM05D004681 ORTHO05D005541 2.1e-73 280.0 250 54.8
TPR.G5388 Trifolium pratense HOM05D004681 ORTHO05D005541 2.8e-73 279.6 274 51.8
arahy.Tifrunner.gnm1.ann1.LX7F61 Arachis hypogaea HOM05D004681 ORTHO05D005541 6.2e-73 278.5 234 55.6
Ca_02042_v3 Cicer arietinum L. HOM05D004681 ORTHO05D005541 8.1e-73 278.1 234 57.3
COL.COLO4_29315 Corchorus olitorius HOM05D004681 ORTHO05D005541 8.1e-73 278.1 265 54.0
arahy.Tifrunner.gnm1.ann1.KM341F Arachis hypogaea HOM05D004681 ORTHO05D005541 1.1e-72 277.7 250 54.4
HanXRQChr04g0105751 Helianthus annuus HOM05D004681 ORTHO05D005541 2.2e-70 270.0 185 64.3
Os06g0168000 Oryza sativa ssp. japonica HOM05D004681 ORTHO05D005541 4.3e-66 255.8 257 49.0
Nn2g12745 Nelumbo nucifera HOM05D004681 ORTHO05D005541 2.8e-65 253.1 264 53.0
HPP92_004723 Vanilla planifolia HOM05D004681 ORTHO05D005541 3.6e-65 252.7 264 49.2
Psat1g145840 Pisum sativum HOM05D004681 ORTHO05D005541 5.2e-64 248.8 201 58.7
AUR62021331 Chenopodium quinoa HOM05D004681 ORTHO05D005541 1.3e-62 244.2 267 49.8
DCAR_019823 Daucus carota HOM05D004410 ORTHO05D006134 6.0e-60 235.3 287 47.4
SHI02877 Sapria himalayana HOM05D004681 ORTHO05D005541 1.3e-59 234.2 434 35.5
CDE06G1906 Ceratophyllum demersum HOM05D004681 ORTHO05D005541 1.8e-56 223.8 272 47.1
Haze_21984 Corylus avellana HOM05D004681 ORTHO05D005541 6.9e-56 221.9 263 45.2
TAR636G1425 Trochodendron aralioides HOM05D004681 ORTHO05D005541 9.9e-55 218.0 170 67.1
vmacro23062 Vaccinium macrocarpon HOM05D004681 ORTHO05D005541 7.1e-53 211.8 191 56.5
Potri.018G147625 Populus trichocarpa HOM05D004681 ORTHO05D005541 1.7e-51 207.2 232 49.1
Zm00001eb375500 Zea mays HOM05D004681 ORTHO05D005541 2.5e-50 203.4 182 51.1
Pp3c12_12510 Physcomitrium patens HOM05D004681 ORTHO05D005541 1.3e-49 201.1 303 37.3
CAN.G609.4 Capsicum annuum HOM05D004681 ORTHO05D005541 4.8e-49 199.1 137 63.5
Mapoly0001s0301 Marchantia polymorpha HOM05D004681 ORTHO05D005541 4.8e-49 199.1 250 42.0
RcHm_v2.0_Chr7g0191431 Rosa chinensis HOM05D004681 ORTHO05D005541 3.1e-48 196.4 260 46.2
Pp3c4_10660 Physcomitrium patens HOM05D004681 ORTHO05D005541 1.3e-46 191.0 232 41.8
AagrBONN_evm.TU.Sc2ySwM_228.4196 Anthoceros agrestis HOM05D004681 ORTHO05D005541 4.9e-38 162.5 252 36.1
SMO358G0154 Selaginella moellendorffii HOM05D004681 ORTHO05D005541 1.6e-36 157.5 262 38.5
Potri.001G065336 Populus trichocarpa HOM05D004681 ORTHO05D005541 1.3e-35 154.5 112 67.0
SGA_v2.0_scaffold41G15854 Striga asiatica HOM05D004681 ORTHO05D005541 8.7e-35 151.8 264 40.5
CAN.G497.61 Capsicum annuum HOM05D004681 ORTHO05D005541 1.1e-32 144.8 115 61.7
Ca_02046_v3 Cicer arietinum L. HOM05D004681 ORTHO05D005541 3.1e-32 143.3 110 61.8
CAN.G266.1 Capsicum annuum HOM05D004681 ORTHO05D005541 6.7e-27 125.6 160 42.5
Potri.001G064609 Populus trichocarpa HOM05D004681 ORTHO05D005541 1.7e-22 110.9 78 64.1
SMO367G0296 Selaginella moellendorffii HOM05D004681 ORTHO05D005541 7.2e-21 105.5 242 33.1
Potri.018G145080 Populus trichocarpa HOM05D004681 ORTHO05D005541 1.2e-20 104.8 79 67.1
CBR_g39348 Chara braunii HOM05D000019 ORTHO05D000002 4.6e-20 102.8 232 29.7
QL05p087685 Quercus lobata HOM05D004681 ORTHO05D005541 2.9e-14 83.6 191 30.4
MELO3C029108.2 Cucumis melo HOM05D004681 ORTHO05D005541 2.7e-12 77.0 50 64.0
AUR62034598 Chenopodium quinoa HOM05D022644 ORTHO05D003557 9.7e-10 68.6 52 53.8
PRCOL_00000454 Prasinoderma coloniale HOM05D004681 ORTHO05D005541 8.2e-09 65.5 251 25.1
SMO230G0066 Selaginella moellendorffii HOM05D004681 ORTHO05D005541 1.4e-08 64.7 232 28.0
Cre03.g177900 Chlamydomonas reinhardtii HOM05D004681 ORTHO05D005541 3.1e-08 63.5 235 25.1
SMO367G1182 Selaginella moellendorffii HOM05D004681 ORTHO05D005541 1.2e-07 61.6 171 30.4
MELO3C024813.2 Cucumis melo HOM05D001097 ORTHO05D001009 2.6e-07 60.5 33 75.8


User provided reference genes

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