Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0003559 Sechium edule HOM05D003995 ORTHO05D004800 0.0e+00 1318.9 685 100.0
CsaV3_3G023750 Cucumis sativus L. HOM05D003995 ORTHO05D004800 0.0e+00 1084.7 701 84.2
Sed0011470 Sechium edule HOM05D003995 ORTHO05D004800 3.3e-311 1071.2 701 83.5
MELO3C012986.2 Cucumis melo HOM05D003995 ORTHO05D004800 5.9e-281 970.7 631 83.7
Cfa002115 Carpinus fangiana HOM05D003995 ORTHO05D004800 1.5e-223 780.0 718 64.1
CiPaw.02G147500 Carya illinoinensis HOM05D003995 ORTHO05D004800 1.4e-221 773.5 713 62.7
COL.COLO4_30474 Corchorus olitorius HOM05D003995 ORTHO05D004800 1.7e-219 766.5 711 62.3
Thecc.06G096000 Theobroma cacao HOM05D003995 ORTHO05D004800 1.7e-219 766.5 715 62.4
Haze_16334 Corylus avellana HOM05D003995 ORTHO05D004800 3.8e-219 765.4 733 62.3
TAR624G1104 Trochodendron aralioides HOM05D003995 ORTHO05D004800 5.4e-218 761.5 725 62.1
GSVIVG01017039001 Vitis vinifera HOM05D003995 ORTHO05D004800 6.0e-217 758.1 717 61.5
QL05p021104 Quercus lobata HOM05D003995 ORTHO05D004800 6.2e-214 748.0 715 61.4
FvH4_6g32000 Fragaria vesca HOM05D003995 ORTHO05D004800 8.1e-214 747.7 714 60.9
Manes.04G131700 Manihot esculenta HOM05D003995 ORTHO05D004800 5.8e-212 741.5 719 60.5
CiPaw.01G233700 Carya illinoinensis HOM05D003995 ORTHO05D004800 1.7e-211 740.0 709 59.8
FAN05G2434 Fragaria x ananassa HOM05D003995 ORTHO05D004800 1.4e-210 736.9 732 59.6
Gohir.A02G119100 Gossypium hirsutum HOM05D003995 ORTHO05D004800 3.5e-209 732.3 712 60.3
Prupe.3G063200 Prunus persica HOM05D003995 ORTHO05D004800 1.3e-208 730.3 716 60.2
TAR102G0002 Trochodendron aralioides HOM05D003995 ORTHO05D004800 5.1e-208 728.4 726 60.2
Gohir.D03G059900 Gossypium hirsutum HOM05D003995 ORTHO05D004800 8.7e-208 727.6 714 59.8
Gorai.009G136200 Gossypium raimondii HOM05D003995 ORTHO05D004800 1.8e-205 719.9 714 59.9
Manes.11G036200 Manihot esculenta HOM05D003995 ORTHO05D004800 9.0e-205 717.6 736 59.0
Actinidia21699 Actinidia chinensis HOM05D003995 ORTHO05D004800 2.0e-204 716.5 718 58.6
VMungo0331G0049 Vigna mungo HOM05D003995 ORTHO05D004800 3.4e-204 715.7 712 58.6
Hma1.2p1_1689F.1_g297670 Hydrangea macrophylla HOM05D003995 ORTHO05D004800 4.5e-204 715.3 716 58.7
Hma1.2p1_0659F.1_g197350 Hydrangea macrophylla HOM05D003995 ORTHO05D004800 7.6e-204 714.5 716 59.5
MD09G1207100 Malus domestica HOM05D003995 ORTHO05D004800 7.6e-204 714.5 717 58.9
FAN14G0476 Fragaria x ananassa HOM05D003995 ORTHO05D004800 1.7e-203 713.4 714 59.1
Glyma.07G017700 Glycine max HOM05D003995 ORTHO05D004800 2.2e-203 713.0 711 58.9
Gohir.A05G128000 Gossypium hirsutum HOM05D003995 ORTHO05D004800 2.2e-203 713.0 714 59.1
Gohir.D05G132500 Gossypium hirsutum HOM05D003995 ORTHO05D004800 1.4e-202 710.3 714 59.4
CANSAT56G4226 Cannabis sativa HOM05D003995 ORTHO05D004800 3.2e-202 709.1 712 59.4
Ca_11524_v3 Cicer arietinum L. HOM05D003995 ORTHO05D004800 4.2e-202 708.8 715 58.7
Lj3g0012728 Lotus japonicus HOM05D003995 ORTHO05D004800 4.2e-202 708.8 710 59.2
Gorai.003G063800 Gossypium raimondii HOM05D003995 ORTHO05D004800 5.5e-202 708.4 700 59.4
Lalb_Chr25g0280081 Lupinus albus HOM05D003995 ORTHO05D004800 2.1e-201 706.4 705 59.0
Atru.chr1.3467 Acer truncatum HOM05D003995 ORTHO05D004800 5.1e-200 701.8 700 59.9
CSS0043166 Camellia sinensis var. sinensis HOM05D003995 ORTHO05D004800 5.1e-200 701.8 719 58.7
MD17G1187800 Malus domestica HOM05D003995 ORTHO05D004800 8.7e-200 701.0 724 58.0
arahy.Tifrunner.gnm1.ann1.8U94IH Arachis hypogaea HOM05D003995 ORTHO05D004800 1.1e-199 700.7 714 57.7
Potri.001G187000 Populus trichocarpa HOM05D003995 ORTHO05D004800 1.1e-199 700.7 722 58.6
CSS0042187 Camellia sinensis var. sinensis HOM05D003995 ORTHO05D004800 1.5e-199 700.3 718 58.6
FAN02G0974 Fragaria x ananassa HOM05D003995 ORTHO05D004800 1.5e-199 700.3 714 58.3
Medtr8g013720 Medicago truncatula HOM05D003995 ORTHO05D004800 1.9e-199 699.9 721 58.7
Cpa.g.sc109.33 Carica papaya HOM05D003995 ORTHO05D004800 3.3e-199 699.1 700 57.9
Psat4g198440 Pisum sativum HOM05D003995 ORTHO05D004800 3.3e-199 699.1 718 58.6
FAN09G2208 Fragaria x ananassa HOM05D003995 ORTHO05D004800 9.6e-199 697.6 713 58.1
Duzib235G0154 Durio zibethinus HOM05D003995 ORTHO05D004800 1.3e-198 697.2 699 59.2
Dinv30461 Davidia involucrata HOM05D003995 ORTHO05D004800 6.9e-197 691.4 715 57.9
TPR.G14825 Trifolium pratense HOM05D003995 ORTHO05D004800 2.0e-196 689.9 716 58.4
Phvul.010G147000 Phaseolus vulgaris HOM05D003995 ORTHO05D004800 2.6e-196 689.5 708 56.9
Lalb_Chr01g0013091 Lupinus albus HOM05D003995 ORTHO05D004800 4.5e-196 688.7 706 57.4
Eucgr.F03056 Eucalyptus grandis HOM05D003995 ORTHO05D004800 7.6e-196 688.0 709 58.0
TWI75G1811 Tripterygium wilfordii HOM05D003995 ORTHO05D004800 7.6e-196 688.0 713 58.6
PGR102G1287 Punica granatum HOM05D003995 ORTHO05D004800 3.2e-194 682.6 715 56.4
THA.LOC104817968 Tarenaya hassleriana HOM05D003995 ORTHO05D004800 7.1e-194 681.4 718 57.2
Ciclev10027380m.g Citrus clementina HOM05D003995 ORTHO05D004800 2.7e-193 679.5 739 57.2
PSO210G6397 Papaver somniferum HOM05D003995 ORTHO05D004800 2.7e-193 679.5 724 56.9
TWI12G0239 Tripterygium wilfordii HOM05D003995 ORTHO05D004800 2.7e-193 679.5 713 57.5
PSO210G6330 Papaver somniferum HOM05D003995 ORTHO05D004800 4.6e-193 678.7 727 57.6
AT3G16270 Arabidopsis thaliana HOM05D003995 ORTHO05D004800 6.0e-193 678.3 713 57.4
Gorai.010G229800 Gossypium raimondii HOM05D003995 ORTHO05D004800 1.3e-192 677.2 712 57.6
Sp3g14640 Schrenkiella parvula HOM05D003995 ORTHO05D004800 1.8e-192 676.8 716 57.0
Hund06648 Selenicereus undatus HOM05D003995 ORTHO05D004800 3.0e-192 676.0 719 57.0
TWI18G0079 Tripterygium wilfordii HOM05D003995 ORTHO05D004800 1.5e-191 673.7 714 56.9
CARHR091480 Cardamine hirsuta HOM05D003995 ORTHO05D004800 2.5e-191 672.9 722 57.1
Carub.0003s1602 Capsella rubella HOM05D003995 ORTHO05D004800 5.7e-191 671.8 717 57.3
Gohir.D06G197450 Gossypium hirsutum HOM05D003995 ORTHO05D004800 9.7e-191 671.0 712 57.4
Glyma.08G202900 Glycine max HOM05D003995 ORTHO05D004800 1.3e-190 670.6 710 56.6
THA.LOC104810534 Tarenaya hassleriana HOM05D003995 ORTHO05D004800 1.6e-190 670.2 712 56.3
AL3G29010 Arabidopsis lyrata HOM05D003995 ORTHO05D004800 4.8e-190 668.7 715 56.6
Aqoxy7G01498 Aquilegia oxysepala HOM05D003995 ORTHO05D004800 1.2e-188 664.1 720 56.2
A05p33250 Brassica napus HOM05D003995 ORTHO05D004800 1.5e-188 663.7 715 55.4
BcaC05g28900 Brassica carinata HOM05D003995 ORTHO05D004800 2.0e-188 663.3 714 55.9
BolC5t33775H Brassica oleracea HOM05D003995 ORTHO05D004800 2.0e-188 663.3 714 55.9
Sc12g0009570 Simmondsia chinensis HOM05D003995 ORTHO05D004800 2.0e-188 663.3 718 55.3
BcaB06g25717 Brassica carinata HOM05D003995 ORTHO05D004800 2.6e-188 662.9 713 55.1
BraA05t22150Z Brassica rapa HOM05D003995 ORTHO05D004800 3.4e-188 662.5 714 55.7
C05p50240 Brassica napus HOM05D003995 ORTHO05D004800 7.7e-188 661.4 716 55.3
Thhalv10020187m.g Eutrema salsugineum HOM05D003995 ORTHO05D004800 3.8e-187 659.1 711 56.0
Dinv38000 Davidia involucrata HOM05D003995 ORTHO05D004800 4.2e-186 655.6 708 56.1
Eucgr.J02949 Eucalyptus grandis HOM05D003995 ORTHO05D004800 9.4e-186 654.4 718 56.4
Cc00_g10390 Coffea canephora HOM05D003995 ORTHO05D004800 2.7e-185 652.9 714 54.9
CSS0032416 Camellia sinensis var. sinensis HOM05D003995 ORTHO05D004800 2.0e-183 646.7 705 56.5
Peaxi162Scf00090g00073 Petunia axillaris HOM05D003995 ORTHO05D004800 4.3e-183 645.6 712 54.5
PGR102G1422 Punica granatum HOM05D003995 ORTHO05D004800 4.3e-183 645.6 712 54.9
Aa31LG8G3420 Aethionema arabicum HOM05D003995 ORTHO05D004800 1.3e-182 644.0 718 55.2
Migut.H00960 Erythranthe guttata HOM05D003995 ORTHO05D004800 4.8e-182 642.1 705 55.3
Nitab4.5_0002549g0020 Nicotiana tabacum HOM05D003995 ORTHO05D004800 2.6e-180 636.3 709 52.9
AUR62031875 Chenopodium quinoa HOM05D003995 ORTHO05D004800 1.3e-179 634.0 716 53.8
Oeu050081.1 Olea europaea HOM05D003995 ORTHO05D004800 2.2e-179 633.3 719 55.1
Oeu017626.1 Olea europaea HOM05D003995 ORTHO05D004800 6.5e-179 631.7 719 53.8
CAN.G60.5 Capsicum annuum HOM05D003995 ORTHO05D004800 8.5e-179 631.3 714 53.4
EL10Ac9g22110 Beta vulgaris HOM05D003995 ORTHO05D004800 1.1e-175 620.9 719 53.3
Glyma.13G355800 Glycine max HOM05D003995 ORTHO05D004800 1.5e-175 620.5 716 52.5
MBI04_g27074_MAGBIO Magnolia biondii HOM05D003266 ORTHO05D003718 3.7e-174 615.9 727 52.5
Lsat_1_v5_gn_2_39201 Lactuca sativa HOM05D003995 ORTHO05D004800 4.8e-174 615.5 722 53.2
AUR62022169 Chenopodium quinoa HOM05D003995 ORTHO05D004800 4.1e-173 612.5 715 52.7
DCAR_019957 Daucus carota HOM05D003995 ORTHO05D004800 4.1e-173 612.5 709 53.2
PGSC0003DMG400008535 Solanum tuberosum HOM05D003995 ORTHO05D004800 7.0e-173 611.7 719 51.9
MSTRG.23509 Avicennia marina HOM05D003995 ORTHO05D004800 2.0e-172 610.1 722 51.5
Rhsim08G0225700 Rhododendron simsii HOM05D003995 ORTHO05D004800 2.0e-172 610.1 720 52.8
Ah.01g005620 Amaranthus hybridus HOM05D003995 ORTHO05D004800 2.2e-171 606.7 724 52.3
SGA_v2.0_scaffold44G16540 Striga asiatica HOM05D003995 ORTHO05D004800 2.0e-167 593.6 719 52.2
HanXRQChr14g0434431 Helianthus annuus HOM05D003995 ORTHO05D004800 7.4e-167 591.7 721 52.7
Nn2g11632 Nelumbo nucifera HOM05D003995 ORTHO05D004800 7.4e-167 591.7 724 52.3
Ah.01g021840 Amaranthus hybridus HOM05D003995 ORTHO05D004800 2.4e-165 586.6 704 52.8
Nitab4.5_0004354g0010 Nicotiana tabacum HOM05D003995 ORTHO05D004800 5.9e-164 582.0 869 44.5
Sopen04g017970 Solanum pennellii HOM05D003995 ORTHO05D004800 3.2e-162 576.2 718 50.7
ATR0705G117 Amborella trichopoda HOM05D003995 ORTHO05D004800 1.6e-161 573.9 737 50.3
HanXRQChr01g0017801 Helianthus annuus HOM05D003995 ORTHO05D004800 1.8e-160 570.5 698 50.1
Phvul.005G170500 Phaseolus vulgaris HOM05D003995 ORTHO05D004800 1.8e-160 570.5 717 48.8
Solyc04g047770.3 Solanum lycopersicum HOM05D003995 ORTHO05D004800 3.0e-160 569.7 718 50.7
VMungo1080G0563 Vigna mungo HOM05D003995 ORTHO05D004800 1.2e-159 567.8 702 50.0
SalBow1G2060 Salvia bowleyana HOM05D003995 ORTHO05D004800 2.7e-156 556.6 744 48.1
ECA248G2833 Erigeron canadensis HOM05D003995 ORTHO05D004800 5.0e-155 552.4 694 51.4
Os01g0232400 Oryza sativa ssp. japonica HOM05D003995 ORTHO05D004800 1.6e-153 547.4 717 49.7
CDE08G1118 Ceratophyllum demersum HOM05D003995 ORTHO05D004800 3.0e-152 543.1 714 48.9
CDE02G3541 Ceratophyllum demersum HOM05D003995 ORTHO05D004800 5.7e-151 538.9 715 48.0
Zm00001eb119170 Zea mays HOM05D003995 ORTHO05D004800 1.1e-149 534.6 718 48.7
SHI11063 Sapria himalayana HOM05D003995 ORTHO05D004800 5.9e-148 528.9 699 50.1
Zm00001eb339300 Zea mays HOM05D003995 ORTHO05D004800 1.0e-147 528.1 720 49.4
Nn3g18163 Nelumbo nucifera HOM05D003995 ORTHO05D004800 2.1e-137 493.8 383 69.7
ClCG07G013220 Citrullus lanatus HOM05D003995 ORTHO05D004800 9.8e-135 485.0 326 81.0
Gohir.A06G188875 Gossypium hirsutum HOM05D003995 ORTHO05D004800 1.1e-133 481.5 373 70.0
SEGI_23305 Sequoiadendron giganteum HOM05D003995 ORTHO05D004800 8.6e-131 471.9 727 44.4
HPP92_008092 Vanilla planifolia HOM05D003995 ORTHO05D004800 1.1e-130 471.5 731 45.6
SalBow1G1048 Salvia bowleyana HOM05D003995 ORTHO05D004800 9.2e-125 451.8 377 64.2
SalBow1G5856 Salvia bowleyana HOM05D003995 ORTHO05D004800 9.2e-125 451.8 377 64.2
MBI01_g24453_MAGBIO Magnolia biondii HOM05D003995 ORTHO05D004800 3.9e-123 446.4 697 45.5
RcHm_v2.0_Chr2g0139591 Rosa chinensis HOM05D003995 ORTHO05D004800 9.5e-122 441.8 325 74.2
vmacro18871 Vaccinium macrocarpon HOM05D003995 ORTHO05D004800 8.3e-118 428.7 323 71.8
QL04p048641 Quercus lobata HOM05D003995 ORTHO05D004800 5.6e-114 416.0 605 45.6
Lj4A820G41 Lonicera japonica HOM05D003995 ORTHO05D004800 1.2e-100 371.7 539 47.7
Mapoly0022s0096 Marchantia polymorpha HOM05D003995 ORTHO05D004800 2.7e-100 370.5 736 40.1
Pp3c2_17390 Physcomitrium patens HOM05D003995 ORTHO05D004800 3.1e-96 357.1 732 38.4
SMO340G0180 Selaginella moellendorffii HOM05D003995 ORTHO05D004800 2.0e-95 354.4 708 38.8
AagrBONN_evm.TU.Sc2ySwM_362.567 Anthoceros agrestis HOM05D003995 ORTHO05D004800 6.0e-84 316.2 782 34.1
Hund00665 Selenicereus undatus HOM05D003995 ORTHO05D004800 1.6e-81 308.1 494 44.3
RcHm_v2.0_Chr2g0139601 Rosa chinensis HOM05D003995 ORTHO05D004800 4.0e-80 303.5 393 50.4
MBI01_g39826_MAGBIO Magnolia biondii HOM05D003995 ORTHO05D004800 1.4e-72 278.5 624 36.4
Sabra01G0153300 Salix brachista HOM05D003995 ORTHO05D004800 3.1e-72 277.3 397 47.4
arahy.Tifrunner.gnm1.ann1.QE1TJP Arachis hypogaea HOM05D003995 ORTHO05D004800 2.5e-69 267.7 389 45.0
CBR_g36315 Chara braunii HOM05D003995 ORTHO05D004800 2.5e-61 241.1 479 37.2
Actinidia39150 Actinidia chinensis HOM05D003995 ORTHO05D004800 9.7e-58 229.2 346 46.8
Actinidia32710 Actinidia chinensis HOM05D003995 ORTHO05D004800 3.8e-54 217.2 151 76.8
CBR_g31940 Chara braunii HOM05D003995 ORTHO05D004800 6.1e-52 209.9 857 28.6
vmacro18870 Vaccinium macrocarpon HOM05D003995 ORTHO05D004800 6.3e-41 173.3 350 40.6
CDE02G4060 Ceratophyllum demersum HOM05D003995 ORTHO05D004800 4.1e-40 170.6 152 55.3
CBR_g25753 Chara braunii HOM05D003995 ORTHO05D004800 9.1e-40 169.5 244 42.2
Actinidia32709 Actinidia chinensis HOM05D003995 ORTHO05D004800 1.6e-36 158.7 346 37.6
HanXRQChr10g0310971 Helianthus annuus HOM05D003995 ORTHO05D004800 8.3e-33 146.4 169 51.5
Actinidia09000 Actinidia chinensis HOM05D003995 ORTHO05D004800 2.3e-30 138.3 181 48.1
Glyma.15G018300 Glycine max HOM05D003995 ORTHO05D004800 1.9e-29 135.2 251 38.6
Cre12.g545300 Chlamydomonas reinhardtii HOM05D003995 ORTHO05D004800 1.0e-27 129.4 384 29.9
FAN18G0014 Fragaria x ananassa HOM05D003995 ORTHO05D004800 3.4e-26 124.4 69 88.4
Cre12.g545150 Chlamydomonas reinhardtii HOM05D003995 ORTHO05D004800 2.9e-25 121.3 361 31.3
Lj4C820T9 Lonicera japonica HOM05D003995 ORTHO05D004800 6.4e-25 120.2 69 87.0
PRCOL_00002233 Prasinoderma coloniale HOM05D003995 ORTHO05D004800 1.0e-22 112.8 443 26.0
MBI07_g11499_MAGBIO Magnolia biondii HOM05D003995 ORTHO05D004800 1.8e-19 102.1 62 80.6
Actinidia08998 Actinidia chinensis HOM05D003995 ORTHO05D004800 2.3e-19 101.7 57 91.2
FvH4_5g23151 Fragaria vesca HOM05D003995 ORTHO05D004800 9.8e-18 96.3 50 94.0
FvH4_7g32131 Fragaria vesca HOM05D003995 ORTHO05D004800 1.1e-16 92.8 50 90.0
SEGI_12342 Sequoiadendron giganteum HOM05D003995 ORTHO05D004800 2.4e-16 91.7 76 52.6
Gorai.003G083400 Gossypium raimondii HOM05D003995 ORTHO05D004800 7.8e-15 86.7 93 50.5
Gohir.D03G024850 Gossypium hirsutum HOM05D003995 ORTHO05D004800 5.0e-14 84.0 93 48.4
Actinidia39149 Actinidia chinensis HOM05D003995 ORTHO05D004800 2.5e-13 81.6 148 40.5
Lsat_1_v5_gn_7_27180 Lactuca sativa HOM05D003995 ORTHO05D004605 1.6e-12 79.0 56 71.4
Pp3c1_18430 Physcomitrium patens HOM05D003995 ORTHO05D004800 6.8e-11 73.6 416 26.0
MBI03_g21265_MAGBIO Magnolia biondii HOM05D003995 ORTHO05D004800 2.4e-08 65.1 46 67.4
MCO13G545 Micromonas commoda HOM05D003995 ORTHO05D004800 3.2e-08 64.7 383 21.7
Zm00001eb248030 Zea mays HOM05D002169 ORTHO05D004800 6.0e-07 60.5 86 48.8


User provided reference genes

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