Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0003455 Sechium edule HOM05D000053 ORTHO05D000035 2.3e-113 412.5 250 100.0
Sed0012272 Sechium edule HOM05D000053 ORTHO05D000035 5.9e-29 132.1 116 69.0
ClCG06G000930 Citrullus lanatus HOM05D000053 ORTHO05D000035 8.8e-25 118.2 159 51.6
CsaV3_6G006670 Cucumis sativus L. HOM05D000053 ORTHO05D000035 8.2e-23 111.7 143 49.0
QL01p030125 Quercus lobata HOM05D000053 ORTHO05D000035 6.1e-18 95.5 147 39.5
MELO3C022449.2 Cucumis melo HOM05D000053 ORTHO05D000035 4.0e-17 92.8 251 47.4
CsaV3_6G006650 Cucumis sativus L. HOM05D000053 ORTHO05D000035 6.3e-15 85.5 152 58.6
QL04p073518 Quercus lobata HOM05D000053 ORTHO05D000035 5.4e-14 82.4 147 35.4
Manes.03G091144 Manihot esculenta HOM05D000053 ORTHO05D000035 9.1e-14 81.6 153 35.9
ClCG06G000820 Citrullus lanatus HOM05D000053 ORTHO05D000035 2.0e-13 80.5 287 42.5
CsaV3_2G010150 Cucumis sativus L. HOM05D000053 ORTHO05D000035 2.7e-13 80.1 152 40.8
Sed0025590 Sechium edule HOM05D000053 ORTHO05D000035 5.9e-13 79.0 117 46.2
CsaV3_6G006760 Cucumis sativus L. HOM05D000053 ORTHO05D000035 1.3e-12 77.8 255 40.0
CsaV3_6G006780 Cucumis sativus L. HOM05D000053 ORTHO05D000035 1.3e-12 77.8 145 58.6
MELO3C022447.2 Cucumis melo HOM05D000053 ORTHO05D000035 1.7e-12 77.4 145 59.3
CsaV3_6G006640 Cucumis sativus L. HOM05D000053 ORTHO05D000035 1.7e-12 77.4 126 38.9
CsaV3_6G006680 Cucumis sativus L. HOM05D000053 ORTHO05D000035 2.9e-12 76.6 146 58.2
QL07p003250 Quercus lobata HOM05D000053 ORTHO05D000035 6.5e-12 75.5 171 31.0
MELO3C022459.2 Cucumis melo HOM05D000053 ORTHO05D000035 1.1e-11 74.7 263 43.7
Nitab4.5_0000444g0170 Nicotiana tabacum HOM05D000053 ORTHO05D000448 1.5e-11 74.3 163 36.2
TWI73G0994 Tripterygium wilfordii HOM05D000053 ORTHO05D000035 1.9e-11 73.9 159 32.1
Hma1.2p1_2053F.1_g312700 Hydrangea macrophylla HOM05D000053 ORTHO05D000035 3.2e-11 73.2 138 35.5
QL08p013111 Quercus lobata HOM05D000053 ORTHO05D000035 3.2e-11 73.2 140 35.7
QL10p041191 Quercus lobata HOM05D000053 ORTHO05D000448 3.2e-11 73.2 176 32.4
TWI38G1191 Tripterygium wilfordii HOM05D000053 ORTHO05D000035 4.2e-11 72.8 153 34.0
Gohir.D05G381500 Gossypium hirsutum HOM05D000053 ORTHO05D000035 5.5e-11 72.4 157 33.8
Medtr5g086600 Medicago truncatula HOM05D000053 ORTHO05D000035 7.2e-11 72.0 153 34.0
HanXRQChr10g0286951 Helianthus annuus HOM05D000053 ORTHO05D000448 1.2e-10 71.2 125 42.4
PGR031G2526 Punica granatum HOM05D000053 ORTHO05D000448 1.2e-10 71.2 143 35.7
QL09p046045 Quercus lobata HOM05D000053 ORTHO05D000035 1.2e-10 71.2 127 36.2
QL10p058001 Quercus lobata HOM05D000053 ORTHO05D000035 1.2e-10 71.2 147 34.0
Thecc.07G019400 Theobroma cacao HOM05D000053 ORTHO05D000035 1.2e-10 71.2 168 32.1
Duzib093G2016 Durio zibethinus HOM05D000053 ORTHO05D000448 2.1e-10 70.5 164 32.9
QL10p041208 Quercus lobata HOM05D000053 ORTHO05D000448 2.1e-10 70.5 175 34.3
Medtr4g018940 Medicago truncatula HOM05D000053 ORTHO05D000448 2.8e-10 70.1 144 36.1
RcHm_v2.0_Chr5g0043131 Rosa chinensis HOM05D000053 ORTHO05D000035 2.8e-10 70.1 162 31.5
Gohir.D05G380100 Gossypium hirsutum HOM05D000053 ORTHO05D000035 3.6e-10 69.7 128 35.9
Psat0s3493g0240 Pisum sativum HOM05D000053 ORTHO05D000448 3.6e-10 69.7 137 37.2
QL04p064871 Quercus lobata HOM05D000053 ORTHO05D000035 3.6e-10 69.7 149 32.9
Peaxi162Scf00014g00029 Petunia axillaris HOM05D000053 ORTHO05D000448 4.7e-10 69.3 163 31.9
PGR031G1664 Punica granatum HOM05D000053 ORTHO05D000448 4.7e-10 69.3 144 36.1
CARHR019250 Cardamine hirsuta HOM05D000311 ORTHO05D000183 6.1e-10 68.9 154 35.1
Duzib177G0955 Durio zibethinus HOM05D000053 ORTHO05D000035 1.0e-09 68.2 147 32.0
RcHm_v2.0_Chr5g0042831 Rosa chinensis HOM05D000053 ORTHO05D000035 1.0e-09 68.2 162 30.9
PGR083G0829 Punica granatum HOM05D000053 ORTHO05D000035 1.4e-09 67.8 117 35.9
QL08p015947 Quercus lobata HOM05D000053 ORTHO05D000448 1.4e-09 67.8 168 32.7
QL10p041485 Quercus lobata HOM05D000053 ORTHO05D000448 1.4e-09 67.8 125 39.2
CsaV3_2G010140 Cucumis sativus L. HOM05D000053 ORTHO05D000035 1.8e-09 67.4 60 53.3
CsaV3_6G006630 Cucumis sativus L. HOM05D000053 ORTHO05D000035 2.3e-09 67.0 119 42.9
QL08p005311 Quercus lobata HOM05D000053 ORTHO05D000035 2.3e-09 67.0 149 34.9
AL1G64890 Arabidopsis lyrata HOM05D000311 ORTHO05D000183 4.0e-09 66.2 170 30.0
CiPaw.03G280100 Carya illinoinensis HOM05D000053 ORTHO05D000035 4.0e-09 66.2 135 35.6
SalBow8G2334 Salvia bowleyana HOM05D000053 ORTHO05D000448 4.0e-09 66.2 122 40.2
CAN.G823.6 Capsicum annuum HOM05D000053 ORTHO05D000448 5.2e-09 65.9 125 38.4
Ciclev10017648m.g Citrus clementina HOM05D000053 ORTHO05D000035 5.2e-09 65.9 138 33.3
DCAR_012081 Daucus carota HOM05D000053 ORTHO05D000035 5.2e-09 65.9 125 36.0
Cc01_g08180 Coffea canephora HOM05D000053 ORTHO05D000035 6.8e-09 65.5 126 38.1
CsaV3_6G006690 Cucumis sativus L. HOM05D000053 ORTHO05D000035 6.8e-09 65.5 126 39.7
vmacro09434 Vaccinium macrocarpon HOM05D000053 ORTHO05D000035 6.8e-09 65.5 210 43.3
Haze_16211 Corylus avellana HOM05D000053 ORTHO05D000448 8.8e-09 65.1 125 36.0
THA.LOC104813299 Tarenaya hassleriana HOM05D000053 ORTHO05D000035 8.8e-09 65.1 160 33.8
arahy.Tifrunner.gnm1.ann1.T4Y6AK Arachis hypogaea HOM05D000053 ORTHO05D000035 1.2e-08 64.7 134 33.6
CANSAT11G2552 Cannabis sativa HOM05D000053 ORTHO05D000035 1.2e-08 64.7 181 28.7
EL10Ac4g08018 Beta vulgaris HOM05D000053 ORTHO05D000035 1.5e-08 64.3 138 32.6
COL.COLO4_17551 Corchorus olitorius HOM05D000053 ORTHO05D000035 2.0e-08 63.9 141 34.0
Duzib128G1565 Durio zibethinus HOM05D000053 ORTHO05D000035 2.0e-08 63.9 130 36.9
SalBow6G2920 Salvia bowleyana HOM05D000053 ORTHO05D000448 2.0e-08 63.9 122 39.3
EL10Ac3g05854 Beta vulgaris HOM05D000053 ORTHO05D000448 2.6e-08 63.5 163 32.5
C04p16310 Brassica napus HOM05D000053 ORTHO05D000035 2.6e-08 63.5 165 32.7
CDE04G1453 Ceratophyllum demersum HOM05D000053 ORTHO05D000448 2.6e-08 63.5 164 32.3
QL08p005375 Quercus lobata HOM05D000053 ORTHO05D000035 2.6e-08 63.5 149 33.6
BcaC02g11379 Brassica carinata HOM05D000053 ORTHO05D000035 3.4e-08 63.2 165 32.7
Haze_21037 Corylus avellana HOM05D000053 ORTHO05D000448 3.4e-08 63.2 119 37.0
Dinv18507 Davidia involucrata HOM05D000053 ORTHO05D000448 3.4e-08 63.2 170 31.8
Gorai.012G117000 Gossypium raimondii HOM05D000053 ORTHO05D000448 3.4e-08 63.2 123 35.0
Peaxi162Scf00014g00126 Petunia axillaris HOM05D000053 ORTHO05D000448 3.4e-08 63.2 129 36.4
Thecc.07G018900 Theobroma cacao HOM05D000053 ORTHO05D000035 3.4e-08 63.2 179 30.2
Actinidia11565 Actinidia chinensis HOM05D000053 ORTHO05D000448 4.4e-08 62.8 120 31.7
Medtr5g046350 Medicago truncatula HOM05D000053 ORTHO05D000448 4.4e-08 62.8 151 31.8
TWI38G0397 Tripterygium wilfordii HOM05D000053 ORTHO05D000035 4.4e-08 62.8 157 30.6
Ciclev10015570m.g Citrus clementina HOM05D000053 ORTHO05D000035 5.7e-08 62.4 235 39.6
PGR044G1913 Punica granatum HOM05D000053 ORTHO05D000035 5.7e-08 62.4 116 32.8
VMungo0647G1375 Vigna mungo HOM05D000121 ORTHO05D000102 5.7e-08 62.4 123 34.1
QL03p024134 Quercus lobata HOM05D000053 ORTHO05D000035 7.5e-08 62.0 149 31.5
PGR044G2324 Punica granatum HOM05D000053 ORTHO05D000035 9.8e-08 61.6 155 32.9
PGR142G0727 Punica granatum HOM05D000053 ORTHO05D000035 9.8e-08 61.6 128 32.8
QL04p065651 Quercus lobata HOM05D000053 ORTHO05D000035 9.8e-08 61.6 112 40.2
Solyc12g100010.1 Solanum lycopersicum HOM05D000053 ORTHO05D000035 1.3e-07 61.2 166 31.3
AT2G32660 Arabidopsis thaliana HOM05D000053 ORTHO05D000035 1.7e-07 60.8 140 33.6
PGSC0003DMG401002869 Solanum tuberosum HOM05D000053 ORTHO05D000035 1.7e-07 60.8 166 31.9
arahy.Tifrunner.gnm1.ann1.JR3XQC Arachis hypogaea HOM05D000053 ORTHO05D000035 2.8e-07 60.1 157 32.5
AUR62017072 Chenopodium quinoa HOM05D002577 ORTHO05D000035 2.8e-07 60.1 149 33.6
MBI14_g08897_MAGBIO Magnolia biondii HOM05D000053 ORTHO05D000035 2.8e-07 60.1 112 38.4
Thecc.10G132800 Theobroma cacao HOM05D000053 ORTHO05D000035 2.8e-07 60.1 126 33.3
arahy.Tifrunner.gnm1.ann1.V74NXF Arachis hypogaea HOM05D000053 ORTHO05D000035 3.7e-07 59.7 152 30.9
Carub.0002s0936 Capsella rubella HOM05D000311 ORTHO05D000183 3.7e-07 59.7 153 29.4
Eucgr.E01229 Eucalyptus grandis HOM05D000053 ORTHO05D000035 3.7e-07 59.7 123 35.8
Sc02g0006090 Simmondsia chinensis HOM05D000053 ORTHO05D000035 3.7e-07 59.7 137 33.6
Sopen10g028140 Solanum pennellii HOM05D000053 ORTHO05D000448 3.7e-07 59.7 147 32.7
GSVIVG01034788001 Vitis vinifera HOM05D000053 ORTHO05D000035 3.7e-07 59.7 161 29.2
AL4G28630 Arabidopsis lyrata HOM05D000053 ORTHO05D000035 4.9e-07 59.3 153 32.0
PGR019G0002 Punica granatum HOM05D000053 ORTHO05D000035 4.9e-07 59.3 114 31.6
Sc03g0011200 Simmondsia chinensis HOM05D000053 ORTHO05D000035 4.9e-07 59.3 163 30.1
Medtr4g064760 Medicago truncatula HOM05D000053 ORTHO05D000035 6.3e-07 58.9 151 29.8
Sp4g15400 Schrenkiella parvula HOM05D000053 ORTHO05D000035 6.3e-07 58.9 215 26.5
CAN.G1167.1 Capsicum annuum HOM05D000053 ORTHO05D000035 8.3e-07 58.5 121 35.5
AUR62036409 Chenopodium quinoa HOM05D000053 ORTHO05D000035 8.3e-07 58.5 145 29.0
Dinv05364 Davidia involucrata HOM05D000053 ORTHO05D000035 8.3e-07 58.5 222 39.6
Eucgr.E01238 Eucalyptus grandis HOM05D000053 ORTHO05D000035 8.3e-07 58.5 123 35.8
PGR044G0600 Punica granatum HOM05D000053 ORTHO05D000035 8.3e-07 58.5 114 34.2
TPR.G8195 Trifolium pratense HOM05D000053 ORTHO05D000448 8.3e-07 58.5 130 34.6
AT2G33020 Arabidopsis thaliana HOM05D000053 ORTHO05D000035 1.1e-06 58.2 141 34.0
arahy.Tifrunner.gnm1.ann1.75UAZN Arachis hypogaea HOM05D000053 ORTHO05D000035 1.1e-06 58.2 146 32.9
arahy.Tifrunner.gnm1.ann1.BMX328 Arachis hypogaea HOM05D000053 ORTHO05D000035 1.1e-06 58.2 146 32.9
Thecc.05G198500 Theobroma cacao HOM05D000053 ORTHO05D000035 1.1e-06 58.2 144 31.2
Psat7g243640 Pisum sativum HOM05D000053 ORTHO05D000448 1.4e-06 57.8 121 36.4
Sp4g15410 Schrenkiella parvula HOM05D000053 ORTHO05D000035 1.4e-06 57.8 153 33.3
BraA04t17970Z Brassica rapa HOM05D000053 ORTHO05D000035 1.8e-06 57.4 141 31.9
CAN.G484.17 Capsicum annuum HOM05D000053 ORTHO05D000035 1.8e-06 57.4 122 34.4
Manes.03G091122 Manihot esculenta HOM05D000053 ORTHO05D000035 1.8e-06 57.4 240 40.4
Prupe.2G130100 Prunus persica HOM05D000053 ORTHO05D000035 1.8e-06 57.4 136 31.6
SalBow6G6488 Salvia bowleyana HOM05D000053 ORTHO05D000035 1.8e-06 57.4 133 58.6
CANSAT35G0442 Cannabis sativa HOM05D000053 ORTHO05D000035 2.4e-06 57.0 126 29.4
DCAR_001832 Daucus carota HOM05D000053 ORTHO05D000035 2.4e-06 57.0 127 33.1
Gohir.D05G380501 Gossypium hirsutum HOM05D000053 ORTHO05D000035 2.4e-06 57.0 110 34.5
Gorai.007G329100 Gossypium raimondii HOM05D000053 ORTHO05D000035 2.4e-06 57.0 241 40.7
SalBow6G2950 Salvia bowleyana HOM05D000053 ORTHO05D000035 2.4e-06 57.0 229 43.7
SalBow7G1435 Salvia bowleyana HOM05D004358 ORTHO05D004960 2.4e-06 57.0 156 30.8
Ah.09g234380 Amaranthus hybridus HOM05D000053 ORTHO05D000035 3.1e-06 56.6 142 33.8
Haze_12658 Corylus avellana HOM05D000053 ORTHO05D000035 3.1e-06 56.6 117 34.2
QL03p054392 Quercus lobata HOM05D000053 ORTHO05D000035 3.1e-06 56.6 120 37.5
BcaC02g11380 Brassica carinata HOM05D000053 ORTHO05D000035 4.1e-06 56.2 123 35.8
C04p16350 Brassica napus HOM05D000053 ORTHO05D000035 4.1e-06 56.2 123 35.8
Lj5C645T2 Lonicera japonica HOM05D000053 ORTHO05D000448 4.1e-06 56.2 130 36.2
Prupe.2G128700 Prunus persica HOM05D000053 ORTHO05D000035 4.1e-06 56.2 97 38.1
QL04p080539 Quercus lobata HOM05D000053 ORTHO05D000035 4.1e-06 56.2 124 36.3
Thecc.01G195200 Theobroma cacao HOM05D000053 ORTHO05D000448 4.1e-06 56.2 117 34.2
TAR622G1251 Trochodendron aralioides HOM05D000053 ORTHO05D000035 4.1e-06 56.2 128 33.6
PGSC0003DMG400022452 Solanum tuberosum HOM05D000053 ORTHO05D000035 5.4e-06 55.8 126 33.3
TWI38G1218 Tripterygium wilfordii HOM05D000053 ORTHO05D000035 5.4e-06 55.8 137 31.4
arahy.Tifrunner.gnm1.ann1.U2RA4L Arachis hypogaea HOM05D000053 ORTHO05D000035 7.0e-06 55.5 146 28.1
Eucgr.F02785 Eucalyptus grandis HOM05D000053 ORTHO05D000035 7.0e-06 55.5 87 37.9
PGR083G1325 Punica granatum HOM05D000053 ORTHO05D000035 7.0e-06 55.5 113 33.6
PGR083G2375 Punica granatum HOM05D000053 ORTHO05D000035 7.0e-06 55.5 106 29.2
QL03p025309 Quercus lobata HOM05D000053 ORTHO05D000035 7.0e-06 55.5 120 36.7
SalBow6G1066 Salvia bowleyana HOM05D000053 ORTHO05D000035 7.0e-06 55.5 229 44.1
Sed0010402 Sechium edule HOM05D000053 ORTHO05D000448 7.0e-06 55.5 160 30.0
Thecc.07G019200 Theobroma cacao HOM05D000053 ORTHO05D000035 7.0e-06 55.5 157 30.6
AUR62036430 Chenopodium quinoa HOM05D000053 ORTHO05D000035 9.2e-06 55.1 149 33.6
Medtr4g018920 Medicago truncatula HOM05D000053 ORTHO05D000448 9.2e-06 55.1 136 33.1
Nitab4.5_0000517g0130 Nicotiana tabacum HOM05D000053 ORTHO05D000035 9.2e-06 55.1 121 34.7
QL07p003288 Quercus lobata HOM05D000053 ORTHO05D000035 9.2e-06 55.1 147 27.9
PGSC0003DMG400023867 Solanum tuberosum HOM05D000053 ORTHO05D000035 9.2e-06 55.1 124 39.5
Thecc.07G020100 Theobroma cacao HOM05D000053 ORTHO05D000035 9.2e-06 55.1 259 40.5


User provided reference genes

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