Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0003355 Sechium edule HOM05D004740 ORTHO05D005991 2.9e-180 635.2 333 100.0
CsaV3_1G036540 Cucumis sativus L. HOM05D004740 ORTHO05D005991 4.9e-148 528.1 347 83.0
MELO3C020514.2 Cucumis melo HOM05D004740 ORTHO05D005991 5.4e-147 524.6 347 81.8
Sed0001589 Sechium edule HOM05D004740 ORTHO05D005991 3.6e-143 511.9 322 83.9
ClCG03G000380 Citrullus lanatus HOM05D004740 ORTHO05D005991 4.0e-142 508.4 391 73.4
Gorai.003G150000 Gossypium raimondii HOM05D004740 ORTHO05D005991 8.4e-140 500.7 313 83.1
Gohir.A03G025700 Gossypium hirsutum HOM05D004740 ORTHO05D005991 3.2e-139 498.8 313 82.7
A05p15240 Brassica napus HOM05D004740 ORTHO05D005991 1.2e-138 496.9 338 78.1
BolC4t23568H Brassica oleracea HOM05D004740 ORTHO05D005991 1.2e-138 496.9 338 78.1
BraA05t20443Z Brassica rapa HOM05D004740 ORTHO05D005991 2.1e-138 496.1 338 78.1
CiPaw.13G069800 Carya illinoinensis HOM05D004740 ORTHO05D005991 3.5e-138 495.4 311 81.7
C04p20390 Brassica napus HOM05D004740 ORTHO05D005991 4.6e-138 495.0 338 77.8
QL01p026440 Quercus lobata HOM05D004740 ORTHO05D005991 4.6e-138 495.0 351 76.1
AT2G30200 Arabidopsis thaliana HOM05D004740 ORTHO05D005991 6.0e-138 494.6 314 81.2
COL.COLO4_11143 Corchorus olitorius HOM05D004740 ORTHO05D005991 6.0e-138 494.6 313 81.8
Duzib168G1324 Durio zibethinus HOM05D004740 ORTHO05D005991 7.9e-138 494.2 313 82.4
Gohir.D03G142800 Gossypium hirsutum HOM05D004740 ORTHO05D005991 1.0e-137 493.8 313 81.8
Sp4g12790 Schrenkiella parvula HOM05D004740 ORTHO05D005991 2.3e-137 492.7 313 81.2
BcaC02g11103 Brassica carinata HOM05D004740 ORTHO05D005991 3.9e-137 491.9 338 77.5
CARHR123500 Cardamine hirsuta HOM05D004740 ORTHO05D005991 3.9e-137 491.9 345 76.8
Prupe.6G048900 Prunus persica HOM05D004740 ORTHO05D005991 8.7e-137 490.7 323 79.9
AL4G25030 Arabidopsis lyrata HOM05D004740 ORTHO05D005991 1.1e-136 490.3 314 80.3
Thhalv10016751m.g Eutrema salsugineum HOM05D004740 ORTHO05D005991 1.1e-136 490.3 313 80.8
Carub.0004s1135 Capsella rubella HOM05D004740 ORTHO05D005991 1.9e-136 489.6 314 80.6
Haze_24407 Corylus avellana HOM05D004740 ORTHO05D005991 1.9e-136 489.6 312 80.8
TAR623G0659 Trochodendron aralioides HOM05D004740 ORTHO05D005991 2.5e-136 489.2 335 77.6
Thecc.09G357100 Theobroma cacao HOM05D004740 ORTHO05D005991 3.3e-136 488.8 313 80.8
C04p59110 Brassica napus HOM05D004740 ORTHO05D005991 4.3e-136 488.4 333 77.2
BolC4t27422H Brassica oleracea HOM05D004740 ORTHO05D005991 4.3e-136 488.4 333 77.2
BraA04t17832Z Brassica rapa HOM05D004740 ORTHO05D005991 4.3e-136 488.4 341 76.5
CSS0045632 Camellia sinensis var. sinensis HOM05D004740 ORTHO05D005991 9.6e-136 487.3 312 80.4
Dinv28694 Davidia involucrata HOM05D004740 ORTHO05D005991 9.6e-136 487.3 317 79.2
BcaB02g10307 Brassica carinata HOM05D004740 ORTHO05D005991 1.3e-135 486.9 340 76.5
Cfa011772 Carpinus fangiana HOM05D004740 ORTHO05D005991 1.3e-135 486.9 312 80.8
PGR102G2346 Punica granatum HOM05D004740 ORTHO05D005991 1.3e-135 486.9 312 80.4
Nitab4.5_0002737g0070 Nicotiana tabacum HOM05D004740 ORTHO05D005991 2.1e-135 486.1 353 74.2
TWI75G0989 Tripterygium wilfordii HOM05D004740 ORTHO05D005991 2.8e-135 485.7 313 79.2
Ciclev10028558m.g Citrus clementina HOM05D004740 ORTHO05D005991 4.8e-135 485.0 317 79.5
BcaC02g08041 Brassica carinata HOM05D004740 ORTHO05D005991 8.1e-135 484.2 333 76.3
MD11G1056800 Malus domestica HOM05D004740 ORTHO05D005991 8.1e-135 484.2 347 75.5
BolC3t14364H Brassica oleracea HOM05D004740 ORTHO05D005991 1.1e-134 483.8 344 75.6
FvH4_3g39690 Fragaria vesca HOM05D004740 ORTHO05D005991 1.4e-134 483.4 314 79.6
Peaxi162Scf00055g00057 Petunia axillaris HOM05D004740 ORTHO05D005991 1.8e-134 483.0 339 75.8
arahy.Tifrunner.gnm1.ann1.T9C115 Arachis hypogaea HOM05D004740 ORTHO05D005991 2.4e-134 482.6 313 79.9
Rhsim13G0064700 Rhododendron simsii HOM05D004740 ORTHO05D005991 2.4e-134 482.6 316 79.4
arahy.Tifrunner.gnm1.ann1.MX8U3M Arachis hypogaea HOM05D004740 ORTHO05D005991 4.0e-134 481.9 313 79.6
Nn2g13251 Nelumbo nucifera HOM05D004740 ORTHO05D005991 4.0e-134 481.9 338 75.7
Aa31LG5G6500 Aethionema arabicum HOM05D004740 ORTHO05D005991 5.3e-134 481.5 324 77.8
RcHm_v2.0_Chr5g0071571 Rosa chinensis HOM05D004740 ORTHO05D005991 6.9e-134 481.1 313 79.2
Sopen01g002970 Solanum pennellii HOM05D004740 ORTHO05D005991 6.9e-134 481.1 324 77.8
Glyma.18G057700 Glycine max HOM05D004740 ORTHO05D005991 9.0e-134 480.7 339 76.1
Solyc01g006980.4 Solanum lycopersicum HOM05D004740 ORTHO05D005991 9.0e-134 480.7 324 77.5
PGSC0003DMG400021362 Solanum tuberosum HOM05D004740 ORTHO05D005991 9.0e-134 480.7 324 77.5
vmacro02923 Vaccinium macrocarpon HOM05D004740 ORTHO05D005991 9.0e-134 480.7 313 79.6
BcaB06g28350 Brassica carinata HOM05D004740 ORTHO05D005991 1.2e-133 480.3 341 74.8
THA.LOC104800771 Tarenaya hassleriana HOM05D004740 ORTHO05D005991 1.2e-133 480.3 343 75.5
THA.LOC104826277 Tarenaya hassleriana HOM05D004740 ORTHO05D005991 1.2e-133 480.3 311 78.5
MD03G1055800 Malus domestica HOM05D004740 ORTHO05D005991 2.6e-133 479.2 347 73.8
Sabra09G0059400 Salix brachista HOM05D004740 ORTHO05D005991 2.6e-133 479.2 322 77.6
Hund29009 Selenicereus undatus HOM05D004740 ORTHO05D005991 2.6e-133 479.2 296 81.4
Hund29013 Selenicereus undatus HOM05D004740 ORTHO05D005991 2.6e-133 479.2 296 81.4
SGA_v2.0_scaffold146G36123 Striga asiatica HOM05D004740 ORTHO05D005991 2.6e-133 479.2 334 74.9
TAR633G1387 Trochodendron aralioides HOM05D004740 ORTHO05D005991 2.6e-133 479.2 305 80.7
arahy.Tifrunner.gnm1.ann1.FJ253B Arachis hypogaea HOM05D004740 ORTHO05D005991 3.4e-133 478.8 313 79.2
Potri.009G077800 Populus trichocarpa HOM05D004740 ORTHO05D005991 3.4e-133 478.8 321 77.6
Manes.18G127700 Manihot esculenta HOM05D004740 ORTHO05D005991 4.5e-133 478.4 295 82.7
Nitab4.5_0001121g0110 Nicotiana tabacum HOM05D004740 ORTHO05D005991 4.5e-133 478.4 353 73.1
Eucgr.J01859 Eucalyptus grandis HOM05D004740 ORTHO05D005991 7.6e-133 477.6 312 78.5
Lalb_Chr18g0051371 Lupinus albus HOM05D004740 ORTHO05D005991 7.6e-133 477.6 315 78.4
PSO339G6109 Papaver somniferum HOM05D004740 ORTHO05D005991 9.9e-133 477.2 317 78.2
Phvul.006G073300 Phaseolus vulgaris HOM05D004740 ORTHO05D005991 9.9e-133 477.2 312 79.5
Lj6g0008641 Lotus japonicus HOM05D004740 ORTHO05D005991 2.2e-132 476.1 333 75.1
PSO801G0690 Papaver somniferum HOM05D004740 ORTHO05D005991 2.9e-132 475.7 317 78.2
CANSAT54G2578 Cannabis sativa HOM05D004740 ORTHO05D005991 4.9e-132 474.9 313 79.6
Lj2A1092T52 Lonicera japonica HOM05D004740 ORTHO05D005991 6.4e-132 474.6 336 73.8
HanXRQChr01g0012131 Helianthus annuus HOM05D004740 ORTHO05D005991 1.1e-131 473.8 316 76.6
CAN.G911.42 Capsicum annuum HOM05D004740 ORTHO05D005991 1.4e-131 473.4 317 77.6
Glyma.11G164500 Glycine max HOM05D004740 ORTHO05D005991 1.9e-131 473.0 313 78.3
Aqoxy2G00789 Aquilegia oxysepala HOM05D004740 ORTHO05D005991 3.2e-131 472.2 298 81.5
Ca_15002_v3 Cicer arietinum L. HOM05D004740 ORTHO05D005991 3.2e-131 472.2 312 77.6
Ah.15g096090 Amaranthus hybridus HOM05D004740 ORTHO05D005991 5.5e-131 471.5 326 74.8
Os03g0297400 Oryza sativa ssp. japonica HOM05D004740 ORTHO05D005991 7.1e-131 471.1 314 77.4
VMungo0540G0639 Vigna mungo HOM05D004740 ORTHO05D005991 7.1e-131 471.1 338 75.7
arahy.Tifrunner.gnm1.ann1.C8ZV0S Arachis hypogaea HOM05D004740 ORTHO05D005991 9.3e-131 470.7 331 74.6
Migut.N00764 Erythranthe guttata HOM05D004740 ORTHO05D005991 1.2e-130 470.3 313 78.0
FAN11G1726 Fragaria x ananassa HOM05D004740 ORTHO05D005991 1.2e-130 470.3 337 74.2
FAN16G0900 Fragaria x ananassa HOM05D004740 ORTHO05D005991 1.2e-130 470.3 337 74.2
Sc12g0002010 Simmondsia chinensis HOM05D004740 ORTHO05D005991 1.6e-130 469.9 305 78.4
Psat5g153440 Pisum sativum HOM05D004740 ORTHO05D005991 2.7e-130 469.2 342 73.1
EL10Ac7g15913 Beta vulgaris HOM05D004740 ORTHO05D005991 3.5e-130 468.8 334 73.7
Zm00001eb013760 Zea mays HOM05D004740 ORTHO05D005991 4.6e-130 468.4 316 77.2
CDE06G2756 Ceratophyllum demersum HOM05D004740 ORTHO05D005991 7.9e-130 467.6 307 78.5
FAN21G3316 Fragaria x ananassa HOM05D004740 ORTHO05D005991 1.3e-129 466.8 337 73.6
FAN21G3649 Fragaria x ananassa HOM05D004740 ORTHO05D005991 1.3e-129 466.8 337 73.6
Lalb_Chr15g0083211 Lupinus albus HOM05D004740 ORTHO05D005991 1.3e-129 466.8 314 76.8
MSTRG.17889 Avicennia marina HOM05D004740 ORTHO05D005991 1.8e-129 466.5 335 73.4
SalBow2G1640 Salvia bowleyana HOM05D004740 ORTHO05D005991 1.8e-129 466.5 335 72.8
FAN25G0671 Fragaria x ananassa HOM05D004740 ORTHO05D005991 2.3e-129 466.1 337 73.6
Medtr3g031380 Medicago truncatula HOM05D004740 ORTHO05D005991 8.7e-129 464.2 312 76.6
ECA248G3413 Erigeron canadensis HOM05D004740 ORTHO05D005991 2.5e-128 462.6 313 75.7
DCAR_018228 Daucus carota HOM05D004740 ORTHO05D005991 1.3e-127 460.3 295 78.3
AUR62001878 Chenopodium quinoa HOM05D004740 ORTHO05D005991 2.1e-127 459.5 325 72.6
AUR62009675 Chenopodium quinoa HOM05D004740 ORTHO05D005991 4.8e-127 458.4 325 72.0
HanXRQChr01g0012161 Helianthus annuus HOM05D004740 ORTHO05D005991 8.2e-127 457.6 312 75.6
HPP92_013770 Vanilla planifolia HOM05D004740 ORTHO05D005991 2.4e-126 456.1 314 75.2
MBI05_g35601_MAGBIO Magnolia biondii HOM05D004740 ORTHO05D005991 6.9e-126 454.5 336 74.1
Cc01_g14810 Coffea canephora HOM05D004740 ORTHO05D005991 1.5e-125 453.4 277 83.0
SEGI_23058 Sequoiadendron giganteum HOM05D004740 ORTHO05D005991 4.9e-124 448.4 335 71.3
unitig_60.g25555 Utricularia gibba HOM05D004740 ORTHO05D005991 2.5e-123 446.0 295 75.9
ATR0594G208 Amborella trichopoda HOM05D004740 ORTHO05D005991 5.5e-123 444.9 277 82.7
CiPaw.14G054500 Carya illinoinensis HOM05D004740 ORTHO05D005991 7.1e-123 444.5 277 80.9
BcaB01g04122 Brassica carinata HOM05D004740 ORTHO05D005991 9.3e-123 444.1 277 81.2
TPR.G35611 Trifolium pratense HOM05D004740 ORTHO05D005991 4.6e-122 441.8 287 77.7
Mapoly0009s0078 Marchantia polymorpha HOM05D004740 ORTHO05D005991 6.7e-121 438.0 309 72.2
A04p22970 Brassica napus HOM05D004740 ORTHO05D005991 4.3e-120 435.3 311 76.2
AagrBONN_evm.TU.Sc2ySwM_228.2654 Anthoceros agrestis HOM05D004740 ORTHO05D005991 4.8e-119 431.8 326 68.4
C03p19860 Brassica napus HOM05D004740 ORTHO05D005991 6.3e-119 431.4 315 74.9
Lsat_1_v5_gn_5_174621 Lactuca sativa HOM05D004740 ORTHO05D005991 1.1e-118 430.6 339 67.3
Pp3c20_19160 Physcomitrium patens HOM05D004740 ORTHO05D005991 2.4e-118 429.5 339 68.4
BcaC01g06023 Brassica carinata HOM05D004740 ORTHO05D005991 3.1e-118 429.1 344 69.8
SMO200G0259 Selaginella moellendorffii HOM05D004740 ORTHO05D005991 9.4e-115 417.5 305 70.2
Actinidia32613 Actinidia chinensis HOM05D004740 ORTHO05D005991 1.1e-112 410.6 319 69.9
SHI19203 Sapria himalayana HOM05D004740 ORTHO05D005991 6.9e-110 401.4 364 61.0
Atru.chr3.4126 Acer truncatum HOM05D004740 ORTHO05D005991 4.8e-103 378.6 355 61.4
Cpa.g.sc2.364 Carica papaya HOM05D004740 ORTHO05D005991 1.3e-100 370.5 226 85.4
arahy.Tifrunner.gnm1.ann1.R7F6LC Arachis hypogaea HOM05D004740 ORTHO05D005991 6.5e-100 368.2 252 78.2
Cre14.g621650 Chlamydomonas reinhardtii HOM05D004740 ORTHO05D005991 4.2e-99 365.5 317 62.8
PRCOL_00005899 Prasinoderma coloniale HOM05D004740 ORTHO05D005991 1.7e-95 353.6 265 66.8
Nn2g10995 Nelumbo nucifera HOM05D004740 ORTHO05D005991 1.4e-94 350.5 293 67.6
Potri.001G282600 Populus trichocarpa HOM05D004740 ORTHO05D005991 3.5e-93 345.9 283 66.4
CBR_g33923 Chara braunii HOM05D004740 ORTHO05D005991 1.6e-90 337.0 311 57.6
MCO01G413 Micromonas commoda HOM05D004740 ORTHO05D005991 5.3e-86 322.0 332 54.5
GSVIVG01024639001 Vitis vinifera HOM05D004740 ORTHO05D005991 2.8e-74 283.1 178 83.1
Oeu005355.3 Olea europaea HOM05D003290 ORTHO05D005991 2.7e-69 266.5 166 80.7
A03p16880 Brassica napus HOM05D004740 ORTHO05D005991 1.9e-67 260.4 178 77.0
BraA03t10976Z Brassica rapa HOM05D004740 ORTHO05D005991 1.9e-67 260.4 178 77.0
PRCOL_00000466 Prasinoderma coloniale HOM05D004740 ORTHO05D005991 3.2e-62 243.0 284 46.5
MCO04G051 Micromonas commoda HOM05D004740 ORTHO05D005991 1.5e-56 224.2 287 45.3
Cre02.g088250 Chlamydomonas reinhardtii HOM05D004740 ORTHO05D005991 1.3e-52 211.1 315 41.6
GSVIVG01024638001 Vitis vinifera HOM05D004740 ORTHO05D005991 1.5e-51 207.6 117 84.6
Actinidia23202 Actinidia chinensis HOM05D004740 ORTHO05D005991 1.2e-50 204.5 289 45.7
Actinidia02620 Actinidia chinensis HOM05D004740 ORTHO05D005991 1.4e-49 201.1 154 72.1
Nitab4.5_0006359g0020 Nicotiana tabacum HOM05D004740 ORTHO05D005991 7.8e-45 185.3 178 59.6
COL.COLO4_24546 Corchorus olitorius HOM05D004740 ORTHO05D008255 1.3e-44 184.5 179 60.9
Nitab4.5_0000644g0120 Nicotiana tabacum HOM05D004740 ORTHO05D005991 3.3e-35 153.3 149 57.7
Nitab4.5_0006126g0030 Nicotiana tabacum HOM05D004740 ORTHO05D005991 1.2e-32 144.8 213 46.0
Zm00001eb396720 Zea mays HOM05D004740 ORTHO05D444996 1.6e-26 124.4 80 81.2
HPP92_013838 Vanilla planifolia HOM05D004740 ORTHO05D005991 2.4e-22 110.5 88 63.6
Oeu025052.1 Olea europaea HOM05D004740 ORTHO05D005991 5.4e-22 109.4 87 62.1
MBI10_g37352_MAGBIO Magnolia biondii HOM05D004740 ORTHO05D241996 6.5e-15 85.9 75 62.7
Nitab4.5_0000644g0100 Nicotiana tabacum HOM05D004740 ORTHO05D284956 1.3e-12 78.2 48 83.3
HPP92_012003 Vanilla planifolia HOM05D004740 ORTHO05D429499 3.1e-09 67.0 90 46.7
VMungo0331G0938 Vigna mungo HOM05D000577 ORTHO05D001093 4.1e-09 66.6 62 56.5
Carub.0004s1136 Capsella rubella HOM05D004740 ORTHO05D005991 2.6e-08 63.9 42 61.9
MBI15_g35007_MAGBIO Magnolia biondii HOM05D000363 ORTHO05D017376 1.1e-06 58.5 41 70.7


User provided reference genes

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