Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0002127 Sechium edule HOM05D004363 ORTHO05D005110 0.0e+00 2526.9 1290 100.0
ClCG10G018260 Citrullus lanatus HOM05D004363 ORTHO05D005110 0.0e+00 2232.2 1353 85.1
CsaV3_3G038050 Cucumis sativus L. HOM05D004363 ORTHO05D005110 0.0e+00 2210.6 1290 86.7
MELO3C009547.2 Cucumis melo HOM05D004363 ORTHO05D005110 0.0e+00 1951.0 1403 75.1
Ciclev10010925m.g Citrus clementina HOM05D004363 ORTHO05D005110 0.0e+00 1705.3 1295 66.9
Prupe.7G093600 Prunus persica HOM05D004363 ORTHO05D005110 0.0e+00 1700.6 1290 67.2
CiPaw.10G018600 Carya illinoinensis HOM05D004363 ORTHO05D005110 0.0e+00 1684.5 1294 66.8
MD12G1041600 Malus domestica HOM05D004363 ORTHO05D005110 0.0e+00 1668.3 1291 66.4
Atru.chr8.1332 Acer truncatum HOM05D004363 ORTHO05D005110 0.0e+00 1663.7 1296 65.7
MD14G1040700 Malus domestica HOM05D004363 ORTHO05D005110 0.0e+00 1659.4 1299 65.1
FvH4_6g20450 Fragaria vesca HOM05D004363 ORTHO05D005110 0.0e+00 1652.5 1293 66.0
Dinv31774 Davidia involucrata HOM05D004363 ORTHO05D005110 0.0e+00 1640.9 1295 65.1
Duzib093G0100 Durio zibethinus HOM05D004363 ORTHO05D005110 0.0e+00 1639.4 1299 65.3
COL.COLO4_29546 Corchorus olitorius HOM05D004363 ORTHO05D005110 0.0e+00 1630.5 1298 63.0
CANSAT64G2344 Cannabis sativa HOM05D004363 ORTHO05D005110 0.0e+00 1628.2 1291 64.9
Potri.016G068800 Populus trichocarpa HOM05D004363 ORTHO05D005110 0.0e+00 1622.1 1290 64.8
GSVIVG01022591001 Vitis vinifera HOM05D004363 ORTHO05D005110 0.0e+00 1620.9 1273 65.8
Sabra16G0069700 Salix brachista HOM05D004363 ORTHO05D005110 0.0e+00 1615.1 1305 64.4
Duzib128G0297 Durio zibethinus HOM05D004363 ORTHO05D005110 0.0e+00 1604.3 1321 62.7
TAR628G0010 Trochodendron aralioides HOM05D004363 ORTHO05D005110 0.0e+00 1602.4 1309 63.2
TWI74G0412 Tripterygium wilfordii HOM05D004363 ORTHO05D005110 0.0e+00 1598.6 1294 63.6
Cfa020046 Carpinus fangiana HOM05D004363 ORTHO05D005110 0.0e+00 1597.8 1296 64.2
CSS0038425 Camellia sinensis var. sinensis HOM05D004363 ORTHO05D005110 0.0e+00 1595.9 1261 63.7
FAN09G2042 Fragaria x ananassa HOM05D004363 ORTHO05D005110 0.0e+00 1595.1 1382 60.1
TAR169G0003 Trochodendron aralioides HOM05D004363 ORTHO05D005110 0.0e+00 1595.1 1306 63.2
FAN14G2782 Fragaria x ananassa HOM05D004363 ORTHO05D005110 0.0e+00 1588.5 1415 60.2
Eucgr.A02575 Eucalyptus grandis HOM05D004363 ORTHO05D005110 0.0e+00 1580.1 1295 62.5
Manes.08G034300 Manihot esculenta HOM05D004363 ORTHO05D005110 0.0e+00 1562.0 1240 66.1
TWI77G0878 Tripterygium wilfordii HOM05D004363 ORTHO05D005110 0.0e+00 1560.4 1330 61.1
Gohir.A11G315700 Gossypium hirsutum HOM05D004363 ORTHO05D005110 0.0e+00 1557.3 1291 62.9
Medtr7g106380 Medicago truncatula HOM05D004363 ORTHO05D005110 0.0e+00 1557.0 1296 62.1
Gohir.D11G332900 Gossypium hirsutum HOM05D004363 ORTHO05D005110 0.0e+00 1556.2 1293 63.1
TPR.G31289 Trifolium pratense HOM05D004363 ORTHO05D005110 0.0e+00 1554.3 1291 61.7
Gorai.007G363900 Gossypium raimondii HOM05D004363 ORTHO05D005110 0.0e+00 1553.5 1294 63.0
Lj1g0000064 Lotus japonicus HOM05D004363 ORTHO05D005110 0.0e+00 1553.1 1294 62.1
Psat0s3922g0040 Pisum sativum HOM05D004363 ORTHO05D005110 0.0e+00 1553.1 1294 62.1
vmacro07483 Vaccinium macrocarpon HOM05D004363 ORTHO05D005110 0.0e+00 1538.5 1290 60.9
PGR004G0690 Punica granatum HOM05D004363 ORTHO05D005110 0.0e+00 1536.2 1296 61.1
arahy.Tifrunner.gnm1.ann1.KT4HPP Arachis hypogaea HOM05D004363 ORTHO05D005110 0.0e+00 1532.7 1303 61.2
Glyma.03G202700 Glycine max HOM05D004363 ORTHO05D005110 0.0e+00 1530.0 1297 61.3
Ca_09062_v3 Cicer arietinum L. HOM05D004363 ORTHO05D005110 0.0e+00 1529.2 1295 61.2
arahy.Tifrunner.gnm1.ann1.D60SL5 Arachis hypogaea HOM05D004363 ORTHO05D005110 0.0e+00 1527.3 1313 60.8
Glyma.19G200400 Glycine max HOM05D004363 ORTHO05D005110 0.0e+00 1526.1 1298 61.2
Lalb_Chr01g0017831 Lupinus albus HOM05D004363 ORTHO05D005110 0.0e+00 1525.4 1297 61.7
THA.LOC104820934 Tarenaya hassleriana HOM05D004363 ORTHO05D005110 0.0e+00 1516.9 1299 59.7
Oeu035643.1 Olea europaea HOM05D004363 ORTHO05D005110 0.0e+00 1515.4 1295 60.6
Nn6g34649 Nelumbo nucifera HOM05D004363 ORTHO05D005110 0.0e+00 1496.5 1313 59.9
Phvul.001G196200 Phaseolus vulgaris HOM05D004363 ORTHO05D005110 0.0e+00 1496.5 1304 60.4
Thecc.05G106200 Theobroma cacao HOM05D004363 ORTHO05D005110 0.0e+00 1493.8 1189 65.0
VMungo1383G2497 Vigna mungo HOM05D004363 ORTHO05D005110 0.0e+00 1493.0 1299 60.4
Gorai.009G393900 Gossypium raimondii HOM05D004363 ORTHO05D005110 0.0e+00 1490.7 1302 59.5
Sp6g27880 Schrenkiella parvula HOM05D004363 ORTHO05D005110 0.0e+00 1488.4 1292 59.5
Migut.J00693 Erythranthe guttata HOM05D004363 ORTHO05D005110 0.0e+00 1483.0 1295 59.3
QL07p036386 Quercus lobata HOM05D004363 ORTHO05D005110 0.0e+00 1483.0 1111 68.2
C03p08890 Brassica napus HOM05D004363 ORTHO05D005110 0.0e+00 1479.5 1292 59.6
MSTRG.19302 Avicennia marina HOM05D004363 ORTHO05D005110 0.0e+00 1478.4 1291 58.8
AL6G27170 Arabidopsis lyrata HOM05D004363 ORTHO05D005110 0.0e+00 1477.2 1292 59.1
BolC3t13384H Brassica oleracea HOM05D004363 ORTHO05D005110 0.0e+00 1476.1 1293 59.6
Solyc01g006960.3 Solanum lycopersicum HOM05D004363 ORTHO05D005110 0.0e+00 1475.3 1290 58.8
RcHm_v2.0_Chr3g0476301 Rosa chinensis HOM05D004363 ORTHO05D005110 0.0e+00 1474.5 1109 67.9
Thhalv10012466m.g Eutrema salsugineum HOM05D004363 ORTHO05D005110 0.0e+00 1472.6 1294 59.4
MSTRG.5891 Avicennia marina HOM05D004363 ORTHO05D005110 0.0e+00 1471.8 1293 58.5
BraA03t10093Z Brassica rapa HOM05D004363 ORTHO05D005110 0.0e+00 1470.3 1294 59.4
Sopen01g002950 Solanum pennellii HOM05D004363 ORTHO05D005110 0.0e+00 1467.6 1288 59.0
A03p07650 Brassica napus HOM05D004363 ORTHO05D005110 0.0e+00 1466.8 1294 59.2
Carub.0006s1447 Capsella rubella HOM05D004363 ORTHO05D005110 0.0e+00 1466.4 1295 58.8
AT5G16280 Arabidopsis thaliana HOM05D004363 ORTHO05D005110 0.0e+00 1458.7 1292 57.7
Aa31LG11G13340 Aethionema arabicum HOM05D004363 ORTHO05D005110 0.0e+00 1456.0 1306 58.7
Aqoxy1G00638 Aquilegia oxysepala HOM05D004363 ORTHO05D005110 0.0e+00 1451.8 1309 58.8
BolC9t58910H Brassica oleracea HOM05D004363 ORTHO05D005110 0.0e+00 1449.1 1293 58.2
A10p22780 Brassica napus HOM05D004363 ORTHO05D005110 0.0e+00 1444.9 1289 58.3
BraA10t44344Z Brassica rapa HOM05D004363 ORTHO05D005110 0.0e+00 1444.1 1289 58.3
PSO339G1158 Papaver somniferum HOM05D004363 ORTHO05D005110 0.0e+00 1432.5 1303 58.3
Sc01g0005470 Simmondsia chinensis HOM05D004363 ORTHO05D005110 0.0e+00 1431.8 1295 58.2
PSO384G4461 Papaver somniferum HOM05D004363 ORTHO05D005110 0.0e+00 1426.4 1303 58.3
DCAR_020694 Daucus carota HOM05D004363 ORTHO05D005110 0.0e+00 1416.0 1359 53.9
CAN.G911.40 Capsicum annuum HOM05D004363 ORTHO05D005110 0.0e+00 1414.4 1288 56.3
FAN02G1528 Fragaria x ananassa HOM05D004363 ORTHO05D005110 0.0e+00 1414.4 1093 66.4
Lalb_Chr25g0287961 Lupinus albus HOM05D004363 ORTHO05D005110 0.0e+00 1411.4 1296 58.2
EL10Ac5g11738 Beta vulgaris HOM05D004363 ORTHO05D005110 0.0e+00 1408.3 1310 56.9
BcaB01g04994 Brassica carinata HOM05D004363 ORTHO05D005110 0.0e+00 1397.9 1289 57.3
ECA233G0072 Erigeron canadensis HOM05D004363 ORTHO05D005110 0.0e+00 1393.3 1291 56.2
HanXRQChr02g0053261 Helianthus annuus HOM05D004363 ORTHO05D005110 0.0e+00 1370.1 1288 55.7
Dinv12347 Davidia involucrata HOM05D004363 ORTHO05D005110 0.0e+00 1360.5 1079 62.7
Rhsim11G0045000 Rhododendron simsii HOM05D004363 ORTHO05D005110 0.0e+00 1352.4 1154 59.9
AUR62041186 Chenopodium quinoa HOM05D004363 ORTHO05D005110 0.0e+00 1351.3 1295 54.2
FAN05G1872 Fragaria x ananassa HOM05D004363 ORTHO05D005110 0.0e+00 1341.3 1117 63.7
SGA_v2.0_scaffold13G06653 Striga asiatica HOM05D004363 ORTHO05D005110 0.0e+00 1331.6 1274 54.6
BcaNung06113 Brassica carinata HOM05D004363 ORTHO05D005110 0.0e+00 1327.8 1292 55.0
FAN05G3395 Fragaria x ananassa HOM05D004363 ORTHO05D005110 0.0e+00 1327.8 1156 61.4
Hund10860 Selenicereus undatus HOM05D004363 ORTHO05D005110 0.0e+00 1324.3 1301 54.9
Lsat_1_v5_gn_6_33820 Lactuca sativa HOM05D004363 ORTHO05D005110 0.0e+00 1323.5 1291 54.5
Cc06_g06670 Coffea canephora HOM05D004363 ORTHO05D005110 0.0e+00 1312.7 1110 60.7
AUR62030686 Chenopodium quinoa HOM05D004363 ORTHO05D005110 0.0e+00 1282.3 1294 52.4
Gohir.D04G092000 Gossypium hirsutum HOM05D004363 ORTHO05D005110 0.0e+00 1258.4 1079 59.9
ATR0772G191 Amborella trichopoda HOM05D004363 ORTHO05D005110 0.0e+00 1256.9 1334 51.3
HPP92_013952 Vanilla planifolia HOM05D004363 ORTHO05D005110 0.0e+00 1250.0 1260 51.8
Peaxi162Scf00582g00064 Petunia axillaris HOM05D004363 ORTHO05D005110 0.0e+00 1245.0 1203 55.5
Zm00001eb060010 Zea mays HOM05D004363 ORTHO05D005110 0.0e+00 1214.1 1299 49.7
CDE11G0453 Ceratophyllum demersum HOM05D004363 ORTHO05D005110 0.0e+00 1196.8 1298 50.6
Os03g0786900 Oryza sativa ssp. japonica HOM05D004363 ORTHO05D005110 0.0e+00 1191.0 1290 50.5
SEGI_03324 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 0.0e+00 1168.7 1392 48.4
CARHR197030 Cardamine hirsuta HOM05D004363 ORTHO05D005110 1.7e-265 920.2 647 68.9
Nitab4.5_0001177g0040 Nicotiana tabacum HOM05D004363 ORTHO05D005110 2.4e-259 899.8 926 51.6
Pp3c6_8810 Physcomitrium patens HOM05D004363 ORTHO05D005110 3.3e-256 889.4 1351 39.4
Ah.07g203620 Amaranthus hybridus HOM05D004363 ORTHO05D005110 1.3e-252 877.5 846 55.8
Mapoly0053s0062 Marchantia polymorpha HOM05D004363 ORTHO05D005110 7.5e-245 851.7 1368 39.7
Gohir.A04G054800 Gossypium hirsutum HOM05D004363 ORTHO05D005110 3.9e-241 839.3 757 58.4
AagrBONN_evm.TU.Sc2ySwM_228.1566 Anthoceros agrestis HOM05D004363 ORTHO05D005110 3.4e-237 826.2 1115 42.2
unitig_578.g15812 Utricularia gibba HOM05D004363 ORTHO05D005110 1.5e-189 667.9 1289 34.8
SMO196G0050 Selaginella moellendorffii HOM05D004363 ORTHO05D005110 1.1e-187 661.8 930 42.6
TAR623G0254 Trochodendron aralioides HOM05D004363 ORTHO05D005110 1.1e-174 618.6 567 57.0
Cpa.g.sc104.18 Carica papaya HOM05D004363 ORTHO05D005110 6.5e-156 556.2 378 74.3
Nitab4.5_0001191g0010 Nicotiana tabacum HOM05D004363 ORTHO05D005110 1.2e-152 545.4 662 45.6
Haze_20158 Corylus avellana HOM05D004363 ORTHO05D005110 1.7e-143 515.0 505 57.4
Lj1A1055T62 Lonicera japonica HOM05D004363 ORTHO05D005110 2.8e-143 514.2 349 74.2
Cpa.g.sc104.13 Carica papaya HOM05D004363 ORTHO05D005110 9.8e-128 462.6 462 54.3
Cpa.g.sc104.16 Carica papaya HOM05D004363 ORTHO05D005110 7.8e-117 426.4 322 65.2
Haze_20157 Corylus avellana HOM05D004363 ORTHO05D005110 1.5e-96 359.0 222 73.0
Cre01.g024400 Chlamydomonas reinhardtii HOM05D004363 ORTHO05D005110 6.2e-90 337.0 1095 26.0
Gohir.A04G054750 Gossypium hirsutum HOM05D004363 ORTHO05D005110 1.5e-88 332.4 213 75.1
Actinidia03876 Actinidia chinensis HOM05D004363 ORTHO05D005110 3.4e-88 331.3 415 44.8
Gohir.D04G091900 Gossypium hirsutum HOM05D004363 ORTHO05D005110 1.4e-86 325.9 208 74.5
Actinidia03984 Actinidia chinensis HOM05D004363 ORTHO05D005110 1.1e-83 316.2 479 39.9
Lj1C1055T8 Lonicera japonica HOM05D004363 ORTHO05D005110 6.2e-82 310.5 213 69.5
PRCOL_00001893 Prasinoderma coloniale HOM05D004363 ORTHO05D005110 1.1e-75 289.7 1055 25.3
Hma1.2p1_0064F.1_g034600 Hydrangea macrophylla HOM05D004363 ORTHO05D005110 8.7e-68 263.5 290 49.0
CSS0042424 Camellia sinensis var. sinensis HOM05D004363 ORTHO05D005110 4.2e-62 244.6 158 69.0
CSS0011588 Camellia sinensis var. sinensis HOM05D004363 ORTHO05D005110 3.1e-57 228.4 146 68.5
SEGI_33831 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 9.1e-57 226.9 189 56.6
MCO09G191 Micromonas commoda HOM05D004363 ORTHO05D005110 6.1e-53 214.2 841 24.7
CBR_g74641 Chara braunii HOM05D004363 ORTHO05D005110 1.1e-51 209.9 711 25.9
Nn3g20229 Nelumbo nucifera HOM05D004363 ORTHO05D005110 8.0e-45 187.2 167 59.3
Ah.07g203610 Amaranthus hybridus HOM05D004363 ORTHO05D005110 1.0e-44 186.8 216 44.9
Actinidia03879 Actinidia chinensis HOM05D004363 ORTHO05D005110 1.5e-43 183.0 143 62.9
RcHm_v2.0_Chr3g0476311 Rosa chinensis HOM05D004363 ORTHO05D005110 2.5e-38 165.6 150 58.0
C09p60760 Brassica napus HOM05D004363 ORTHO05D005110 5.2e-36 157.9 117 64.1
Actinidia03986 Actinidia chinensis HOM05D004363 ORTHO05D005110 1.2e-35 156.8 111 65.8
SEGI_10491 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 4.4e-35 154.8 123 56.1
CSS0037163 Camellia sinensis var. sinensis HOM05D004363 ORTHO05D005110 2.4e-33 149.1 109 66.1
SEGI_28545 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 4.1e-33 148.3 118 73.7
SEGI_22432 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 2.7e-32 145.6 207 41.1
Rhsim11G0045100 Rhododendron simsii HOM05D004363 ORTHO05D005110 8.6e-31 140.6 147 53.7
SHI08956 Sapria himalayana HOM05D004363 ORTHO05D005110 2.8e-29 135.6 113 73.5
SHI08961 Sapria himalayana HOM05D004363 ORTHO05D005110 1.2e-27 130.2 386 29.8
SHI08960 Sapria himalayana HOM05D004363 ORTHO05D005110 9.8e-27 127.1 187 40.6
Ah.07g203630 Amaranthus hybridus HOM05D004363 ORTHO05D005110 1.5e-22 113.2 207 36.2
SEGI_19509 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 1.8e-20 106.3 85 61.2
arahy.Tifrunner.gnm1.ann1.BA6WS2 Arachis hypogaea HOM05D004363 ORTHO05D005110 1.3e-18 100.1 68 70.6
SHI08951 Sapria himalayana HOM05D004363 ORTHO05D005110 2.9e-18 99.0 85 58.8
Actinidia03877 Actinidia chinensis HOM05D004363 ORTHO05D005110 4.6e-16 91.7 100 47.0
arahy.Tifrunner.gnm1.ann1.P34FZA Arachis hypogaea HOM05D004363 ORTHO05D005110 1.5e-14 86.7 55 70.9
SHI08962 Sapria himalayana HOM05D004363 ORTHO05D005110 3.3e-14 85.5 227 32.6
ATR0820G261 Amborella trichopoda HOM05D004363 ORTHO05D005110 2.1e-13 82.8 208 34.1
SHI08954 Sapria himalayana HOM05D004363 ORTHO05D005110 2.3e-12 79.3 65 55.4
Lsat_1_v5_gn_8_3860 Lactuca sativa HOM05D004363 ORTHO05D005110 3.7e-10 72.0 87 44.8
arahy.Tifrunner.gnm1.ann1.5GE6FN Arachis hypogaea HOM05D000323 ORTHO05D000201 2.0e-08 66.2 41 70.7
Lsat_1_v5_gn_3_22681 Lactuca sativa HOM05D004363 ORTHO05D005110 1.3e-07 63.5 45 66.7
Lsat_1_v5_gn_8_81001 Lactuca sativa HOM05D004363 ORTHO05D005110 8.6e-07 60.8 61 44.3
CAN.G526.3 Capsicum annuum HOM05D004363 ORTHO05D005110 7.3e-06 57.8 76 61.8


User provided reference genes

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