Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0001481 Sechium edule HOM05D003622 ORTHO05D004453 0.0e+00 1626.3 854 100.0
MELO3C010313.2 Cucumis melo HOM05D003622 ORTHO05D004453 0.0e+00 1387.9 857 85.8
CsaV3_1G026740 Cucumis sativus L. HOM05D003622 ORTHO05D004453 0.0e+00 1377.1 857 85.3
Sed0008371 Sechium edule HOM05D003622 ORTHO05D004453 0.0e+00 1258.8 858 81.1
ClCG06G011530 Citrullus lanatus HOM05D003622 ORTHO05D004453 1.6e-299 1032.7 653 84.2
Cfa003424 Carpinus fangiana HOM05D003622 ORTHO05D004453 1.0e-298 1030.0 838 66.0
CiPaw.03G248700 Carya illinoinensis HOM05D003622 ORTHO05D004453 1.4e-295 1019.6 871 65.0
Duzib168G1318 Durio zibethinus HOM05D003622 ORTHO05D004453 2.5e-289 998.8 863 63.7
VMungo1215G2226 Vigna mungo HOM05D003622 ORTHO05D004453 1.1e-284 983.4 866 62.6
Glyma.17G111200 Glycine max HOM05D003622 ORTHO05D004453 4.2e-284 981.5 865 62.4
Glyma.13G160300 Glycine max HOM05D003622 ORTHO05D004453 4.6e-283 978.0 867 62.2
CiPaw.04G174900 Carya illinoinensis HOM05D003622 ORTHO05D004453 6.0e-283 977.6 837 63.8
Gohir.A08G088500 Gossypium hirsutum HOM05D003622 ORTHO05D004453 8.7e-282 973.8 862 62.6
Phvul.003G169000 Phaseolus vulgaris HOM05D003622 ORTHO05D004453 3.3e-281 971.8 867 62.2
COL.COLO4_35161 Corchorus olitorius HOM05D003622 ORTHO05D004453 5.6e-281 971.1 866 62.5
Dinv41474 Davidia involucrata HOM05D003622 ORTHO05D004453 2.8e-280 968.8 830 63.5
Dinv36478 Davidia involucrata HOM05D003622 ORTHO05D004453 6.2e-280 967.6 861 62.1
arahy.Tifrunner.gnm1.ann1.HD4WN1 Arachis hypogaea HOM05D003622 ORTHO05D004453 1.8e-279 966.1 865 61.2
QL02p089888 Quercus lobata HOM05D003622 ORTHO05D004453 4.0e-279 964.9 983 56.1
Gorai.010G061100 Gossypium raimondii HOM05D003622 ORTHO05D004453 5.8e-278 961.1 864 62.6
Ciclev10007427m.g Citrus clementina HOM05D003622 ORTHO05D004453 2.2e-277 959.1 859 61.4
CANSAT11G0379 Cannabis sativa HOM05D003622 ORTHO05D004453 1.1e-276 956.8 857 63.4
Lj4g0015305 Lotus japonicus HOM05D003622 ORTHO05D004453 1.1e-276 956.8 866 61.2
Thecc.09G132400 Theobroma cacao HOM05D003622 ORTHO05D004453 7.1e-276 954.1 862 62.1
Gohir.D06G052700 Gossypium hirsutum HOM05D003622 ORTHO05D004453 3.5e-275 951.8 864 62.2
GSVIVG01015594001 Vitis vinifera HOM05D003622 ORTHO05D004453 1.0e-274 950.3 851 61.7
Gohir.A06G053800 Gossypium hirsutum HOM05D003622 ORTHO05D004453 1.3e-274 949.9 864 62.2
Manes.06G047000 Manihot esculenta HOM05D003622 ORTHO05D004453 1.3e-274 949.9 842 62.5
Gorai.004G107500 Gossypium raimondii HOM05D003622 ORTHO05D004453 5.6e-273 944.5 863 61.3
Gorai.013G235300 Gossypium raimondii HOM05D003622 ORTHO05D004453 5.6e-273 944.5 867 61.0
Potri.018G126100 Populus trichocarpa HOM05D003622 ORTHO05D004453 2.1e-272 942.6 869 61.2
Lalb_Chr13g0301561 Lupinus albus HOM05D003622 ORTHO05D004453 8.1e-272 940.6 867 60.8
Manes.14G116100 Manihot esculenta HOM05D003622 ORTHO05D004453 1.4e-271 939.9 869 61.1
arahy.Tifrunner.gnm1.ann1.DJE2D0 Arachis hypogaea HOM05D003622 ORTHO05D004453 6.9e-271 937.6 906 58.2
TWI34G1661 Tripterygium wilfordii HOM05D003622 ORTHO05D004453 2.6e-270 935.6 862 59.5
Gohir.D08G099700 Gossypium hirsutum HOM05D003622 ORTHO05D004453 2.2e-269 932.6 834 62.8
Potri.006G065600 Populus trichocarpa HOM05D003622 ORTHO05D004453 7.1e-268 927.5 870 60.6
TWI63G1810 Tripterygium wilfordii HOM05D003622 ORTHO05D004453 2.1e-267 926.0 860 59.2
Prupe.7G248800 Prunus persica HOM05D003622 ORTHO05D004453 3.5e-267 925.2 850 60.8
TWI32G0590 Tripterygium wilfordii HOM05D003622 ORTHO05D004453 4.6e-267 924.9 861 59.1
Lalb_Chr12g0198231 Lupinus albus HOM05D003622 ORTHO05D004453 5.1e-266 921.4 854 60.8
Lalb_Chr07g0179261 Lupinus albus HOM05D003622 ORTHO05D004453 1.1e-265 920.2 866 59.4
Medtr4g115350 Medicago truncatula HOM05D003622 ORTHO05D004453 2.1e-264 916.0 865 58.8
Sabra18G0107100 Salix brachista HOM05D003622 ORTHO05D004453 1.5e-262 909.8 867 59.2
MD02G1023300 Malus domestica HOM05D003622 ORTHO05D004453 7.6e-262 907.5 848 59.4
Actinidia21950 Actinidia chinensis HOM05D003622 ORTHO05D004453 8.4e-261 904.0 866 58.5
FvH4_1g02580 Fragaria vesca HOM05D003622 ORTHO05D004453 7.2e-260 901.0 855 59.1
TAR625G0175 Trochodendron aralioides HOM05D003622 ORTHO05D004453 7.2e-260 901.0 855 59.5
FAN19G0217 Fragaria x ananassa HOM05D003622 ORTHO05D004453 2.1e-259 899.4 855 58.9
FAN23G2517 Fragaria x ananassa HOM05D003622 ORTHO05D004453 1.0e-258 897.1 854 58.9
FAN28G0611 Fragaria x ananassa HOM05D003622 ORTHO05D004453 1.0e-258 897.1 855 58.9
MD15G1166400 Malus domestica HOM05D003622 ORTHO05D004453 3.9e-258 895.2 854 58.9
CSS0022552 Camellia sinensis var. sinensis HOM05D003622 ORTHO05D004453 6.7e-258 894.4 863 58.7
Gohir.A13G200800 Gossypium hirsutum HOM05D003622 ORTHO05D004453 8.7e-258 894.0 866 58.0
Lalb_Chr11g0072261 Lupinus albus HOM05D003622 ORTHO05D004453 2.5e-257 892.5 893 56.3
RcHm_v2.0_Chr2g0087611 Rosa chinensis HOM05D003622 ORTHO05D004453 4.3e-257 891.7 840 59.0
Psat0s188g0040 Pisum sativum HOM05D003622 ORTHO05D004453 1.4e-255 886.7 864 57.6
Sabra06G0047800 Salix brachista HOM05D003622 ORTHO05D004453 1.5e-254 883.2 985 53.1
Atru.chr7.1951 Acer truncatum HOM05D003622 ORTHO05D004453 6.3e-248 861.3 715 64.1
Duzib187G1700 Durio zibethinus HOM05D003622 ORTHO05D004453 6.9e-247 857.8 856 57.4
Eucgr.C01387 Eucalyptus grandis HOM05D003622 ORTHO05D004453 6.7e-242 841.3 848 55.4
Peaxi162Scf00088g01327 Petunia axillaris HOM05D003622 ORTHO05D004453 1.5e-241 840.1 856 55.7
TPR.G24803 Trifolium pratense HOM05D003622 ORTHO05D004453 3.3e-241 839.0 874 55.1
Ca_06943_v3 Cicer arietinum L. HOM05D003622 ORTHO05D004453 5.7e-241 838.2 829 56.8
AUR62013307 Chenopodium quinoa HOM05D003622 ORTHO05D004453 6.3e-240 834.7 866 54.8
AUR62011177 Chenopodium quinoa HOM05D003622 ORTHO05D004453 5.9e-238 828.2 866 54.6
Solyc07g007890.3 Solanum lycopersicum HOM05D003622 ORTHO05D004453 5.9e-238 828.2 864 54.2
Sopen07g003790 Solanum pennellii HOM05D003622 ORTHO05D004453 1.0e-237 827.4 864 54.2
EL10Ac8g18721 Beta vulgaris HOM05D003622 ORTHO05D004453 1.3e-237 827.0 855 55.3
Nitab4.5_0003393g0070 Nicotiana tabacum HOM05D003622 ORTHO05D004453 4.2e-236 822.0 857 55.5
Aqoxy7G03634 Aquilegia oxysepala HOM05D003622 ORTHO05D004453 1.6e-235 820.1 866 53.5
Nitab4.5_0002008g0030 Nicotiana tabacum HOM05D003622 ORTHO05D004453 1.6e-235 820.1 857 55.1
PGSC0003DMG400030907 Solanum tuberosum HOM05D003622 ORTHO05D004453 6.1e-235 818.1 865 53.9
Sc08g0006260 Simmondsia chinensis HOM05D003622 ORTHO05D004453 6.7e-234 814.7 857 54.6
Hund09284 Selenicereus undatus HOM05D003622 ORTHO05D004453 3.1e-231 805.8 862 54.1
PSO017G7291 Papaver somniferum HOM05D003622 ORTHO05D004453 7.2e-228 794.7 833 53.4
PSO170G2238 Papaver somniferum HOM05D003622 ORTHO05D004453 2.3e-226 789.6 833 52.9
FAN26G1654 Fragaria x ananassa HOM05D003622 ORTHO05D004453 4.0e-226 788.9 941 50.4
PGR102G2297 Punica granatum HOM05D003622 ORTHO05D004453 2.6e-225 786.2 854 53.0
vmacro07722 Vaccinium macrocarpon HOM05D003622 ORTHO05D004453 3.4e-225 785.8 803 55.2
CAN.G1266.4 Capsicum annuum HOM05D003622 ORTHO05D004453 3.7e-224 782.3 845 52.9
Hund26549 Selenicereus undatus HOM05D003622 ORTHO05D004453 8.3e-224 781.2 860 51.5
vmacro06154 Vaccinium macrocarpon HOM05D003622 ORTHO05D004453 3.5e-222 775.8 839 53.2
Rhsim01G0061400 Rhododendron simsii HOM05D003622 ORTHO05D004453 8.5e-221 771.2 1011 47.3
SalBow1G3694 Salvia bowleyana HOM05D003622 ORTHO05D004453 1.5e-220 770.4 857 52.2
Cc06_g08050 Coffea canephora HOM05D003622 ORTHO05D004453 1.5e-217 760.4 866 53.2
Rhsim03G0251600 Rhododendron simsii HOM05D003622 ORTHO05D004453 1.3e-216 757.3 854 52.5
MSTRG.26437 Avicennia marina HOM05D003622 ORTHO05D004453 1.7e-216 756.9 860 51.9
Cpa.g.sc46.43 Carica papaya HOM05D003622 ORTHO05D004453 6.3e-216 755.0 655 62.1
Duzib150G0473 Durio zibethinus HOM05D003622 ORTHO05D004453 4.5e-214 748.8 861 51.1
THA.LOC104808966 Tarenaya hassleriana HOM05D003622 ORTHO05D004453 3.8e-213 745.7 861 50.3
SalBow6G3081 Salvia bowleyana HOM05D003622 ORTHO05D004453 1.5e-212 743.8 857 52.4
Gohir.D13G206400 Gossypium hirsutum HOM05D003622 ORTHO05D004453 2.5e-212 743.0 865 51.2
Hma1.2p1_0343F.1_g130930 Hydrangea macrophylla HOM05D003622 ORTHO05D004453 8.9e-210 734.6 707 57.1
Migut.K00423 Erythranthe guttata HOM05D003622 ORTHO05D004453 2.6e-209 733.0 852 50.8
DCAR_020889 Daucus carota HOM05D003622 ORTHO05D004453 8.3e-208 728.0 845 52.2
DCAR_009323 Daucus carota HOM05D003622 ORTHO05D004453 1.8e-207 726.9 898 50.1
BcaB06g26937 Brassica carinata HOM05D003622 ORTHO05D004453 6.6e-205 718.4 854 49.1
A04p09700 Brassica napus HOM05D003622 ORTHO05D004453 9.5e-204 714.5 842 49.8
Thhalv10003437m.g Eutrema salsugineum HOM05D003622 ORTHO05D004453 9.5e-204 714.5 853 49.2
ATR0800G088 Amborella trichopoda HOM05D003622 ORTHO05D004453 2.8e-203 713.0 859 50.3
C04p43220 Brassica napus HOM05D003622 ORTHO05D004453 3.6e-203 712.6 843 49.5
SGA_v2.0_scaffold464G52002 Striga asiatica HOM05D003622 ORTHO05D004453 2.3e-202 709.9 849 50.2
CARHR217470 Cardamine hirsuta HOM05D003622 ORTHO05D004453 2.0e-201 706.8 862 48.0
Sp7g06890 Schrenkiella parvula HOM05D003622 ORTHO05D004453 9.8e-201 704.5 858 49.0
CDE03G0113 Ceratophyllum demersum HOM05D003622 ORTHO05D004453 1.5e-196 690.6 835 49.5
BcaB02g08053 Brassica carinata HOM05D003622 ORTHO05D004453 2.5e-196 689.9 851 48.5
AL7G44290 Arabidopsis lyrata HOM05D003622 ORTHO05D004453 4.0e-194 682.6 858 47.1
Actinidia07317 Actinidia chinensis HOM05D003622 ORTHO05D004453 6.8e-194 681.8 720 54.7
Carub.0007s3125 Capsella rubella HOM05D003622 ORTHO05D004453 8.9e-194 681.4 858 46.2
Migut.J01215 Erythranthe guttata HOM05D003622 ORTHO05D004453 1.5e-193 680.6 865 48.8
THA.LOC104826553 Tarenaya hassleriana HOM05D003622 ORTHO05D004453 2.6e-193 679.9 871 47.5
CSS0014966 Camellia sinensis var. sinensis HOM05D003622 ORTHO05D004453 1.7e-192 677.2 655 56.8
Lj7C432T7 Lonicera japonica HOM05D003622 ORTHO05D004453 3.7e-192 676.0 1010 43.5
CSS0042071 Camellia sinensis var. sinensis HOM05D003622 ORTHO05D004453 2.1e-190 670.2 682 54.8
AT5G35430 Arabidopsis thaliana HOM05D003622 ORTHO05D004453 4.6e-190 669.1 853 47.2
Nn2g12120 Nelumbo nucifera HOM05D003622 ORTHO05D004453 8.6e-189 664.8 680 57.6
TAR636G0579 Trochodendron aralioides HOM05D003622 ORTHO05D004453 1.1e-186 657.9 598 61.4
Aa31LG9G18070 Aethionema arabicum HOM05D003622 ORTHO05D004453 1.4e-186 657.5 856 47.1
CDE06G0586 Ceratophyllum demersum HOM05D003622 ORTHO05D004453 3.1e-186 656.4 833 48.0
SGA_v2.0_scaffold63G21826 Striga asiatica HOM05D003622 ORTHO05D004453 2.1e-182 643.7 780 49.0
Lsat_1_v5_gn_5_91841 Lactuca sativa HOM05D003622 ORTHO05D004453 2.4e-178 630.2 846 45.7
HanXRQChr12g0356631 Helianthus annuus HOM05D003622 ORTHO05D004453 4.0e-178 629.4 863 44.5
HanXRQChr10g0315861 Helianthus annuus HOM05D003622 ORTHO05D004453 2.6e-177 626.7 843 45.3
Carub.0001s0938 Capsella rubella HOM05D003622 ORTHO05D004453 3.2e-175 619.8 847 44.3
MBI13_g37002_MAGBIO Magnolia biondii HOM05D003622 ORTHO05D004453 1.6e-174 617.5 633 55.1
ECA234G4065 Erigeron canadensis HOM05D003622 ORTHO05D004453 1.8e-170 604.0 843 44.2
Ah.09g224810 Amaranthus hybridus HOM05D003622 ORTHO05D004453 4.0e-170 602.8 851 44.9
SEGI_29075 Sequoiadendron giganteum HOM05D003622 ORTHO05D004453 3.8e-168 596.3 861 44.9
Oeu056946.1 Olea europaea HOM05D003622 ORTHO05D004453 2.4e-167 593.6 654 53.1
Os09g0123100 Oryza sativa ssp. japonica HOM05D003622 ORTHO05D004453 1.1e-164 584.7 853 43.8
Oeu052762.1 Olea europaea HOM05D003622 ORTHO05D004453 1.1e-156 558.1 654 51.1
unitig_0.g2718 Utricularia gibba HOM05D003622 ORTHO05D004453 9.0e-154 548.5 890 41.8
Zm00001eb308130 Zea mays HOM05D003622 ORTHO05D004453 1.2e-153 548.1 838 41.2
Zm00001eb095440 Zea mays HOM05D003622 ORTHO05D004453 1.1e-151 541.6 849 40.6
BcaC02g09474 Brassica carinata HOM05D003622 ORTHO05D004453 2.5e-151 540.4 843 42.7
Mapoly0024s0101 Marchantia polymorpha HOM05D003622 ORTHO05D004453 1.4e-143 514.6 872 38.9
BolC4t25899H Brassica oleracea HOM05D003622 ORTHO05D004453 2.2e-136 490.7 580 51.0
BraA04t16629Z Brassica rapa HOM05D003622 ORTHO05D004453 5.0e-136 489.6 579 51.1
HPP92_000465 Vanilla planifolia HOM05D003622 ORTHO05D004453 4.1e-130 469.9 581 48.9
Oeu055962.1 Olea europaea HOM05D003622 ORTHO05D004453 1.0e-128 465.3 771 41.6
SMO351G0297 Selaginella moellendorffii HOM05D003622 ORTHO05D004453 4.2e-127 459.9 840 37.5
Pp3c9_20660 Physcomitrium patens HOM05D003622 ORTHO05D004453 6.1e-126 456.1 831 37.2
BcaC02g09475 Brassica carinata HOM05D003622 ORTHO05D004453 6.3e-123 446.0 790 38.2
SHI22466 Sapria himalayana HOM05D003622 ORTHO05D004453 9.1e-122 442.2 658 43.6
Pp3c15_17690 Physcomitrium patens HOM05D003622 ORTHO05D004453 2.6e-121 440.7 838 37.2
CSS0037660 Camellia sinensis var. sinensis HOM05D003622 ORTHO05D004453 1.8e-109 401.4 441 52.6
unitig_748.g7167 Utricularia gibba HOM05D003622 ORTHO05D004453 8.9e-101 372.5 470 46.4
MBI13_g02370_MAGBIO Magnolia biondii HOM05D003622 ORTHO05D004453 9.9e-76 289.3 441 45.8
Oeu052177.3 Olea europaea HOM05D003622 ORTHO05D004453 4.6e-73 280.4 830 32.2
CBR_g27935 Chara braunii HOM05D000019 ORTHO05D000048 4.9e-67 260.4 673 31.2
unitig_748.g7166 Utricularia gibba HOM05D003622 ORTHO05D004453 2.9e-59 234.6 350 44.0
BolC4t25898H Brassica oleracea HOM05D003622 ORTHO05D004453 2.5e-55 221.5 324 45.4
ClCG06G011520 Citrullus lanatus HOM05D003622 ORTHO05D004453 4.6e-49 200.7 116 90.5
A04p09720 Brassica napus HOM05D003622 ORTHO05D004453 1.8e-48 198.7 274 46.0
TAR383G0647 Trochodendron aralioides HOM05D003622 ORTHO05D004453 3.9e-48 197.6 194 54.1
BraA04t16634Z Brassica rapa HOM05D003622 ORTHO05D004453 6.9e-45 186.8 230 48.7
Actinidia38718 Actinidia chinensis HOM05D003622 ORTHO05D004453 1.6e-41 175.6 162 53.1
C04p43210 Brassica napus HOM05D003622 ORTHO05D004453 1.6e-41 175.6 202 51.0
SEGI_39442 Sequoiadendron giganteum HOM05D003622 ORTHO05D004453 3.5e-41 174.5 345 39.7
Cpa.g.sc46.42 Carica papaya HOM05D003622 ORTHO05D004453 2.3e-40 171.8 161 64.6
MBI13_g36807_MAGBIO Magnolia biondii HOM05D003622 ORTHO05D004453 3.3e-39 167.9 119 68.9
HPP92_000473 Vanilla planifolia HOM05D003622 ORTHO05D004453 5.5e-34 150.6 237 38.8
AagrBONN_evm.TU.Sc2ySwM_344.2257 Anthoceros agrestis HOM05D003622 ORTHO05D004453 1.2e-33 149.4 206 41.3
AagrBONN_evm.TU.Sc2ySwM_344.2256 Anthoceros agrestis HOM05D003622 ORTHO05D004453 1.6e-33 149.1 306 35.3
TAR636G1395 Trochodendron aralioides HOM05D007419 ORTHO05D009327 5.1e-32 144.1 139 58.3
ClCG06G011510 Citrullus lanatus HOM05D003622 ORTHO05D004453 6.7e-32 143.7 109 73.4
Haze_25503 Corylus avellana HOM05D003622 ORTHO05D004453 7.4e-31 140.2 116 64.7
SEGI_22443 Sequoiadendron giganteum HOM05D003622 ORTHO05D004453 1.2e-20 106.3 121 47.9
Actinidia38717 Actinidia chinensis HOM05D003622 ORTHO05D004453 4.5e-20 104.4 114 52.6
SEGI_04910 Sequoiadendron giganteum HOM05D003622 ORTHO05D004453 5.0e-19 100.9 151 39.7
GSVIVG01013521001 Vitis vinifera HOM05D004687 ORTHO05D006002 1.1e-18 99.8 73 68.5
Potri.004G126780 Populus trichocarpa HOM05D000030 ORTHO05D000009 2.5e-18 98.6 101 60.4
SHI22468 Sapria himalayana HOM05D003622 ORTHO05D004453 2.5e-18 98.6 116 49.1
SEGI_12874 Sequoiadendron giganteum HOM05D003622 ORTHO05D004453 1.2e-17 96.3 73 63.0
Potri.004G126740 Populus trichocarpa HOM05D000030 ORTHO05D000009 2.1e-17 95.5 101 59.4
HPP92_000472 Vanilla planifolia HOM05D003622 ORTHO05D004453 2.6e-15 88.6 193 37.8
MBI13_g36805_MAGBIO Magnolia biondii HOM05D003622 ORTHO05D004453 4.4e-15 87.8 144 46.5
MD02G1023900 Malus domestica HOM05D003622 ORTHO05D048666 1.4e-13 82.8 86 51.2
Sabra10G0016400 Salix brachista HOM05D003622 ORTHO05D004453 2.0e-12 79.0 59 62.7
MBI13_g48239_MAGBIO Magnolia biondii HOM05D003622 ORTHO05D004453 4.5e-12 77.8 150 37.3
MBI13_g02371_MAGBIO Magnolia biondii HOM05D003622 ORTHO05D000708 5.5e-10 70.9 65 58.5
Oeu042754.1 Olea europaea HOM05D003622 ORTHO05D004453 2.6e-07 62.0 47 57.4
Actinidia38716 Actinidia chinensis HOM05D003622 ORTHO05D004453 9.7e-07 60.1 57 54.4
Oeu055964.1 Olea europaea HOM05D001574 ORTHO05D000708 3.7e-06 58.2 68 50.0
CBR_g27932 Chara braunii HOM05D000019 ORTHO05D000002 6.3e-06 57.4 151 30.5


User provided reference genes

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