Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0001422 Sechium edule HOM05D002505 ORTHO05D007115 2.2e-230 802.0 416 100.0
ClCG05G020760 Citrullus lanatus HOM05D002505 ORTHO05D007115 6.9e-200 700.7 414 87.4
CsaV3_5G036540 Cucumis sativus L. HOM05D002505 ORTHO05D007115 3.9e-195 684.9 412 85.0
MELO3C012450.2 Cucumis melo HOM05D002505 ORTHO05D007115 2.7e-172 609.0 447 74.0
Cfa011943 Carpinus fangiana HOM05D002505 ORTHO05D007115 5.0e-150 535.0 405 68.9
QL02p027659 Quercus lobata HOM05D002505 ORTHO05D007115 1.1e-149 533.9 405 68.9
Haze_09143 Corylus avellana HOM05D002505 ORTHO05D007115 1.8e-147 526.6 406 68.0
CiPaw.11G114300 Carya illinoinensis HOM05D002505 ORTHO05D007115 2.6e-146 522.7 406 66.5
GSVIVG01019628001 Vitis vinifera HOM05D002505 ORTHO05D007115 5.7e-146 521.5 404 66.6
Thecc.03G223700 Theobroma cacao HOM05D002505 ORTHO05D007115 9.8e-146 520.8 406 65.5
TWI60G0007 Tripterygium wilfordii HOM05D002505 ORTHO05D007115 8.3e-145 517.7 407 66.1
FAN17G1638 Fragaria x ananassa HOM05D002505 ORTHO05D007115 7.0e-144 514.6 405 67.2
Duzib205G1766 Durio zibethinus HOM05D002505 ORTHO05D007115 9.2e-144 514.2 403 64.8
TAR375G0040 Trochodendron aralioides HOM05D002505 ORTHO05D007115 2.0e-143 513.1 417 64.0
FAN07G1120 Fragaria x ananassa HOM05D002505 ORTHO05D007115 4.6e-143 511.9 405 66.9
FvH4_4g16080 Fragaria vesca HOM05D002505 ORTHO05D007115 5.0e-142 508.4 405 66.7
FAN12G2820 Fragaria x ananassa HOM05D002505 ORTHO05D007115 5.0e-142 508.4 405 66.7
CANSAT21G2418 Cannabis sativa HOM05D002505 ORTHO05D007115 3.3e-141 505.8 405 67.2
FAN22G1998 Fragaria x ananassa HOM05D002505 ORTHO05D007115 4.3e-141 505.4 405 65.9
Gohir.A12G238900 Gossypium hirsutum HOM05D002505 ORTHO05D007115 9.5e-141 504.2 412 64.1
Prupe.5G127300 Prunus persica HOM05D002505 ORTHO05D007115 8.0e-140 501.1 399 67.4
TPR.G36929 Trifolium pratense HOM05D002505 ORTHO05D007115 1.0e-139 500.7 411 63.5
Gorai.008G257100 Gossypium raimondii HOM05D002505 ORTHO05D007115 1.8e-139 500.0 412 63.8
Ca_12555_v3 Cicer arietinum L. HOM05D002505 ORTHO05D007115 2.3e-139 499.6 412 63.8
Dinv11454 Davidia involucrata HOM05D002505 ORTHO05D007115 5.2e-139 498.4 415 63.9
CSS0047752 Camellia sinensis var. sinensis HOM05D002505 ORTHO05D007115 8.9e-139 497.7 418 65.1
Gohir.D12G240000 Gossypium hirsutum HOM05D002505 ORTHO05D007115 1.5e-138 496.9 412 63.6
Medtr5g025880 Medicago truncatula HOM05D002505 ORTHO05D007115 2.0e-138 496.5 401 63.8
Sopen08g031180 Solanum pennellii HOM05D002505 ORTHO05D007115 4.4e-138 495.4 407 63.9
Dinv37391 Davidia involucrata HOM05D002505 ORTHO05D007115 1.3e-137 493.8 374 68.2
Lj2A158G82 Lonicera japonica HOM05D002505 ORTHO05D007115 2.9e-137 492.7 440 59.8
Eucgr.D01694 Eucalyptus grandis HOM05D002505 ORTHO05D007115 3.7e-137 492.3 414 62.3
RcHm_v2.0_Chr7g0186571 Rosa chinensis HOM05D002505 ORTHO05D007115 3.7e-137 492.3 404 65.3
Lalb_Chr17g0338531 Lupinus albus HOM05D002505 ORTHO05D007115 4.9e-137 491.9 411 63.0
Nitab4.5_0002728g0050 Nicotiana tabacum HOM05D002505 ORTHO05D007115 4.9e-137 491.9 408 64.0
Medtr1g032200 Medicago truncatula HOM05D002505 ORTHO05D007115 6.4e-137 491.5 411 63.5
VMungo1309G3079 Vigna mungo HOM05D002505 ORTHO05D007115 6.4e-137 491.5 409 63.6
Solyc08g082960.3 Solanum lycopersicum HOM05D002505 ORTHO05D007115 1.1e-136 490.7 407 62.9
MD06G1114600 Malus domestica HOM05D002505 ORTHO05D007115 1.4e-136 490.3 405 64.2
Nitab4.5_0005042g0030 Nicotiana tabacum HOM05D002505 ORTHO05D007115 3.2e-136 489.2 381 65.9
Manes.02G004600 Manihot esculenta HOM05D002505 ORTHO05D007115 4.1e-136 488.8 418 63.6
Glyma.06G132900 Glycine max HOM05D002505 ORTHO05D007115 2.7e-135 486.1 414 61.6
vmacro11517 Vaccinium macrocarpon HOM05D002505 ORTHO05D007115 4.6e-135 485.3 480 55.6
arahy.Tifrunner.gnm1.ann1.Y3P1ER Arachis hypogaea HOM05D002505 ORTHO05D007115 1.0e-134 484.2 410 63.2
Cpa.g.sc175.6 Carica papaya HOM05D002505 ORTHO05D007115 1.0e-134 484.2 390 65.6
Potri.003G145100 Populus trichocarpa HOM05D002505 ORTHO05D007115 1.0e-134 484.2 418 62.2
Glyma.04G232000 Glycine max HOM05D002505 ORTHO05D007115 1.3e-134 483.8 406 62.3
LjContig00141g0018407 Lotus japonicus HOM05D002505 ORTHO05D007115 2.3e-134 483.0 408 61.8
Ca_12566_v3 Cicer arietinum L. HOM05D002505 ORTHO05D007115 3.9e-134 482.3 391 64.5
arahy.Tifrunner.gnm1.ann1.31YZJ9 Arachis hypogaea HOM05D002505 ORTHO05D007115 5.0e-134 481.9 410 62.9
Psat6g045400 Pisum sativum HOM05D002505 ORTHO05D007115 6.6e-134 481.5 416 60.8
Aqoxy5G02423 Aquilegia oxysepala HOM05D002505 ORTHO05D007115 1.1e-133 480.7 417 60.2
Peaxi162Scf00074g00358 Petunia axillaris HOM05D002505 ORTHO05D007115 1.1e-133 480.7 389 64.5
Lalb_Chr10g0095811 Lupinus albus HOM05D002505 ORTHO05D007115 1.5e-133 480.3 411 61.8
Phvul.009G039500 Phaseolus vulgaris HOM05D002505 ORTHO05D007115 2.8e-132 476.1 409 61.9
Aqoxy5G01632 Aquilegia oxysepala HOM05D002505 ORTHO05D007115 8.1e-132 474.6 417 60.0
Oeu010746.1 Olea europaea HOM05D002505 ORTHO05D007115 3.1e-131 472.6 406 61.3
HanXRQChr02g0047181 Helianthus annuus HOM05D002505 ORTHO05D007115 6.8e-131 471.5 404 60.6
Cc00_g23270 Coffea canephora HOM05D002505 ORTHO05D007115 4.4e-130 468.8 407 61.2
MSTRG.2011 Avicennia marina HOM05D002505 ORTHO05D007115 2.4e-128 463.0 394 61.9
AUR62019897 Chenopodium quinoa HOM05D002505 ORTHO05D007115 2.7e-127 459.5 408 59.8
AUR62007033 Chenopodium quinoa HOM05D002505 ORTHO05D007115 3.5e-127 459.1 420 58.1
MBI04_g06931_MAGBIO Magnolia biondii HOM05D002505 ORTHO05D007115 7.8e-127 458.0 414 58.2
Ciclev10020379m.g Citrus clementina HOM05D002505 ORTHO05D007115 1.7e-126 456.8 405 59.5
Aa31LG1G18070 Aethionema arabicum HOM05D002505 ORTHO05D007115 6.6e-126 454.9 421 58.7
Actinidia22196 Actinidia chinensis HOM05D002505 ORTHO05D007115 4.3e-125 452.2 410 62.4
SalBow6G5481 Salvia bowleyana HOM05D002505 ORTHO05D007115 7.3e-125 451.4 405 59.8
COL.COLO4_10772 Corchorus olitorius HOM05D002505 ORTHO05D007115 1.2e-124 450.7 356 65.7
Migut.J00879 Erythranthe guttata HOM05D002505 ORTHO05D007115 1.6e-124 450.3 414 58.7
Sabra01G0062100 Salix brachista HOM05D002505 ORTHO05D007115 6.8e-123 444.9 403 59.8
PSO339G4385 Papaver somniferum HOM05D002505 ORTHO05D007115 2.2e-121 439.9 400 57.5
DCAR_009648 Daucus carota HOM05D002505 ORTHO05D007115 8.4e-121 438.0 410 57.3
CDE11G0043 Ceratophyllum demersum HOM05D002505 ORTHO05D007115 5.4e-120 435.3 409 55.3
Sp2g26890 Schrenkiella parvula HOM05D002505 ORTHO05D007115 7.1e-120 434.9 422 56.4
Nn4g26685 Nelumbo nucifera HOM05D002505 ORTHO05D007115 1.6e-119 433.7 332 68.4
THA.LOC104823623 Tarenaya hassleriana HOM05D002505 ORTHO05D007115 1.6e-119 433.7 378 59.8
Os10g0520700 Oryza sativa ssp. japonica HOM05D002505 ORTHO05D007115 2.7e-119 433.0 394 55.1
Dinv25607 Davidia involucrata HOM05D002505 ORTHO05D007115 2.3e-118 429.9 355 64.2
CARHR277730 Cardamine hirsuta HOM05D002505 ORTHO05D007115 5.1e-118 428.7 424 56.4
SGA_v2.0_scaffold104G30125 Striga asiatica HOM05D002505 ORTHO05D007115 1.9e-117 426.8 417 54.7
unitig_22.g5105 Utricularia gibba HOM05D002505 ORTHO05D007115 3.3e-117 426.0 396 57.1
A06p30440 Brassica napus HOM05D002505 ORTHO05D007115 7.3e-117 424.9 420 56.0
BcaC01g02620 Brassica carinata HOM05D002505 ORTHO05D007115 3.6e-116 422.5 397 56.7
BolC3t18519H Brassica oleracea HOM05D002505 ORTHO05D007115 3.6e-116 422.5 421 55.1
C03p62620 Brassica napus HOM05D002505 ORTHO05D007115 8.1e-116 421.4 419 55.1
PGR031G3103 Punica granatum HOM05D002505 ORTHO05D007115 1.4e-115 420.6 364 60.7
BraA06t25993Z Brassica rapa HOM05D002505 ORTHO05D007115 4.0e-115 419.1 420 55.2
Lsat_1_v5_gn_6_9040 Lactuca sativa HOM05D002505 ORTHO05D007115 6.9e-115 418.3 405 54.1
PSO384G5034 Papaver somniferum HOM05D002505 ORTHO05D007115 8.9e-115 417.9 423 54.4
PSO017G1033 Papaver somniferum HOM05D002505 ORTHO05D007115 3.4e-114 416.0 370 58.4
PGSC0003DMG400012246 Solanum tuberosum HOM05D002505 ORTHO05D007115 1.3e-113 414.1 351 62.1
AT5G63830 Arabidopsis thaliana HOM05D002505 ORTHO05D007115 1.7e-113 413.7 423 54.1
Zm00001eb021220 Zea mays HOM05D002505 ORTHO05D007115 2.9e-113 412.9 405 52.6
CAN.G567.73 Capsicum annuum HOM05D002505 ORTHO05D007115 6.0e-111 405.2 356 60.4
Thhalv10004334m.g Eutrema salsugineum HOM05D002505 ORTHO05D007115 3.0e-110 402.9 423 53.4
Carub.0008s2460 Capsella rubella HOM05D002505 ORTHO05D007115 3.9e-110 402.5 423 53.4
ATR0757G152 Amborella trichopoda HOM05D002505 ORTHO05D007115 2.5e-109 399.8 397 54.9
Glyma.13G121900 Glycine max HOM05D002505 ORTHO05D007115 6.2e-108 395.2 354 59.6
AL8G41060 Arabidopsis lyrata HOM05D002505 ORTHO05D007115 3.4e-106 389.4 420 52.1
EL10Ac5g12461 Beta vulgaris HOM05D002505 ORTHO05D007115 6.4e-105 385.2 365 55.9
HPP92_022335 Vanilla planifolia HOM05D002505 ORTHO05D007115 2.4e-104 383.3 445 47.2
HPP92_022360 Vanilla planifolia HOM05D002505 ORTHO05D007115 4.2e-104 382.5 458 46.5
SEGI_04382 Sequoiadendron giganteum HOM05D002505 ORTHO05D007115 4.6e-103 379.0 429 48.5
FAN08G0319 Fragaria x ananassa HOM05D002505 ORTHO05D007115 4.5e-98 362.5 303 66.0
ECA240G2126 Erigeron canadensis HOM05D002505 ORTHO05D007115 5.8e-98 362.1 357 56.0
Mapoly0049s0078 Marchantia polymorpha HOM05D002505 ORTHO05D007115 2.4e-83 313.5 443 40.6
Pp3c16_17440 Physcomitrium patens HOM05D002505 ORTHO05D007115 3.8e-81 306.2 473 38.9
Sc22g0004750 Simmondsia chinensis HOM05D002505 ORTHO05D007115 5.0e-81 305.8 266 60.5
SMO348G0019 Selaginella moellendorffii HOM05D002505 ORTHO05D007115 1.1e-77 294.7 370 43.5
Hma1.2p1_0456F.1_g156510 Hydrangea macrophylla HOM05D002505 ORTHO05D007115 2.2e-76 290.4 222 67.6
SEGI_16855 Sequoiadendron giganteum HOM05D002505 ORTHO05D007115 6.5e-73 278.9 315 48.3
vmacro04587 Vaccinium macrocarpon HOM05D002505 ORTHO05D007115 2.1e-71 273.9 357 47.3
FAN13G3213 Fragaria x ananassa HOM05D002505 ORTHO05D007115 6.3e-68 262.3 193 71.0
RcHm_v2.0_Chr7g0184121 Rosa chinensis HOM05D002505 ORTHO05D007115 1.7e-65 254.2 195 69.2
AagrBONN_evm.TU.Sc2ySwM_368.1194 Anthoceros agrestis HOM05D002505 ORTHO05D007115 1.9e-64 250.8 400 39.2
Potri.001G085800 Populus trichocarpa HOM05D002505 ORTHO05D007115 8.8e-62 241.9 187 66.8
RhsimUnG0115700 Rhododendron simsii HOM05D002505 ORTHO05D007115 1.1e-61 241.5 279 50.5
Atru.chr5.482 Acer truncatum HOM05D002505 ORTHO05D007115 2.2e-52 210.7 149 69.1
Medtr1g090530 Medicago truncatula HOM05D002505 ORTHO05D007115 2.1e-47 194.1 235 48.1
Atru.chr5.483 Acer truncatum HOM05D002505 ORTHO05D007115 2.1e-39 167.5 133 68.4
MCO07G240 Micromonas commoda HOM05D002505 ORTHO05D007115 3.6e-39 166.8 407 31.9
Rhsim10G0016900 Rhododendron simsii HOM05D000068 ORTHO05D004691 1.2e-37 161.8 139 62.6
CBR_g20449 Chara braunii HOM05D002505 ORTHO05D007115 5.7e-37 159.5 322 33.2
FAN05G1175 Fragaria x ananassa HOM05D002505 ORTHO05D007115 3.7e-36 156.8 118 68.6
Zm00001eb044440 Zea mays HOM05D002505 ORTHO05D007115 5.0e-33 146.4 150 52.0
FvH4_5g11280 Fragaria vesca HOM05D002505 ORTHO05D007115 4.3e-32 143.3 278 36.3
Sc22g0004760 Simmondsia chinensis HOM05D002505 ORTHO05D007115 1.0e-30 138.7 94 69.1
SMO285G0002 Selaginella moellendorffii HOM05D002505 ORTHO05D007115 5.7e-29 132.9 316 30.4
FAN14G3314 Fragaria x ananassa HOM05D002505 ORTHO05D007115 1.2e-26 125.2 139 51.8
Actinidia04163 Actinidia chinensis HOM05D002436 ORTHO05D002754 5.0e-25 119.8 167 43.1
Cre08.g379050 Chlamydomonas reinhardtii HOM05D002505 ORTHO05D007115 1.2e-23 115.2 332 28.6
RcHm_v2.0_Chr7g0184131 Rosa chinensis HOM05D002505 ORTHO05D007115 3.7e-20 103.6 70 71.4
Oeu004999.3 Olea europaea HOM05D002505 ORTHO05D007115 7.8e-18 95.9 123 43.1
FvH4_3g32050 Fragaria vesca HOM05D002505 ORTHO05D045879 1.6e-10 71.6 90 44.4
CSS0027773 Camellia sinensis var. sinensis HOM05D003159 ORTHO05D003780 1.0e-09 68.9 73 52.1
BraA06t26113Z Brassica rapa HOM05D005837 ORTHO05D007594 1.5e-08 65.1 105 41.9
HanXRQChr03g0061211 Helianthus annuus HOM05D002505 ORTHO05D007115 6.2e-07 59.7 82 42.7
PRCOL_00002153 Prasinoderma coloniale HOM05D024116 ORTHO05D023526 1.8e-06 58.2 331 24.5


User provided reference genes

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