Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc24g0004200 Simmondsia chinensis HOM05D004127 ORTHO05D005119 3.3e-216 755.7 764 100.0
Hund09649 Selenicereus undatus HOM05D004127 ORTHO05D005119 1.0e-124 451.8 769 73.5
AUR62024623 Chenopodium quinoa HOM05D004127 ORTHO05D005119 2.8e-122 443.7 781 70.7
AUR62011779 Chenopodium quinoa HOM05D004127 ORTHO05D005119 6.2e-122 442.6 781 70.6
QL12p019388 Quercus lobata HOM05D004127 ORTHO05D005119 4.9e-119 433.0 786 77.6
COL.COLO4_23210 Corchorus olitorius HOM05D004127 ORTHO05D005119 7.1e-118 429.1 785 76.2
Thecc.01G315900 Theobroma cacao HOM05D004127 ORTHO05D005119 7.1e-118 429.1 784 75.3
Ah.02g112420 Amaranthus hybridus HOM05D004127 ORTHO05D005119 6.0e-117 426.0 777 69.8
TAR633G0666 Trochodendron aralioides HOM05D004127 ORTHO05D005119 2.3e-116 424.1 783 75.7
PGR083G1839 Punica granatum HOM05D004127 ORTHO05D005119 4.3e-115 419.9 774 77.3
Nn4g25565 Nelumbo nucifera HOM05D004127 ORTHO05D005119 2.1e-114 417.5 783 75.9
Actinidia17915 Actinidia chinensis HOM05D004127 ORTHO05D005119 4.8e-114 416.4 781 75.2
Gorai.008G138300 Gossypium raimondii HOM05D004127 ORTHO05D005119 1.4e-113 414.8 787 74.2
Duzib138G0806 Durio zibethinus HOM05D004127 ORTHO05D005119 3.1e-113 413.7 784 76.3
Gohir.D12G127400 Gossypium hirsutum HOM05D004127 ORTHO05D005119 4.0e-113 413.3 787 74.1
Gohir.A12G123700 Gossypium hirsutum HOM05D004127 ORTHO05D005119 2.6e-112 410.6 785 72.1
Dinv33130 Davidia involucrata HOM05D004127 ORTHO05D005119 3.4e-112 410.2 750 76.9
TWI75G0020 Tripterygium wilfordii HOM05D004127 ORTHO05D005119 5.8e-112 409.5 708 80.1
Actinidia25862 Actinidia chinensis HOM05D004127 ORTHO05D005119 4.9e-111 406.4 712 79.5
THA.LOC104809612 Tarenaya hassleriana HOM05D004127 ORTHO05D005119 4.9e-111 406.4 793 73.0
Prupe.3G010400 Prunus persica HOM05D004127 ORTHO05D005119 1.1e-110 405.2 782 76.7
Cfa005772 Carpinus fangiana HOM05D004127 ORTHO05D005119 3.2e-110 403.7 713 79.7
Aqoxy2G02720 Aquilegia oxysepala HOM05D004127 ORTHO05D005119 5.5e-110 402.9 789 74.0
vmacro02392 Vaccinium macrocarpon HOM05D004127 ORTHO05D005119 9.3e-110 402.1 713 79.2
Manes.05G014100 Manihot esculenta HOM05D004127 ORTHO05D005119 4.6e-109 399.8 791 73.8
Gohir.A11G108300 Gossypium hirsutum HOM05D004127 ORTHO05D005119 6.0e-109 399.4 778 74.6
Nn3g21732 Nelumbo nucifera HOM05D004127 ORTHO05D005119 6.0e-109 399.4 777 74.4
Ciclev10018807m.g Citrus clementina HOM05D004127 ORTHO05D005119 1.3e-108 398.3 791 73.8
Potri.014G118500 Populus trichocarpa HOM05D004127 ORTHO05D005119 5.1e-108 396.4 791 75.5
Rhsim13G0003800 Rhododendron simsii HOM05D004127 ORTHO05D005119 8.7e-108 395.6 714 79.6
Sabra02G0162500 Salix brachista HOM05D004127 ORTHO05D005119 1.1e-107 395.2 790 72.3
Potri.002G193900 Populus trichocarpa HOM05D004127 ORTHO05D005119 2.5e-107 394.0 788 73.6
Haze_05068 Corylus avellana HOM05D004127 ORTHO05D005119 4.3e-107 393.3 712 79.2
Manes.01G229400 Manihot esculenta HOM05D004127 ORTHO05D005119 4.3e-107 393.3 786 73.3
Gorai.007G121300 Gossypium raimondii HOM05D004127 ORTHO05D005119 5.7e-107 392.9 778 74.6
MD09G1284400 Malus domestica HOM05D004127 ORTHO05D005119 1.3e-106 391.7 781 73.4
RcHm_v2.0_Chr3g0487361 Rosa chinensis HOM05D004127 ORTHO05D005119 2.8e-106 390.6 786 73.4
CANSAT25G0729 Cannabis sativa HOM05D004127 ORTHO05D005119 8.2e-106 389.0 793 73.3
Gohir.D11G112800 Gossypium hirsutum HOM05D004127 ORTHO05D005119 1.8e-105 387.9 778 74.2
THA.LOC104819204 Tarenaya hassleriana HOM05D004127 ORTHO05D005119 2.4e-105 387.5 793 73.6
ClCG09G004980 Citrullus lanatus HOM05D004127 ORTHO05D005119 3.1e-105 387.1 786 73.0
Thhalv10006755m.g Eutrema salsugineum HOM05D004127 ORTHO05D005119 3.1e-105 387.1 818 71.5
MELO3C015913.2 Cucumis melo HOM05D004127 ORTHO05D005119 4.1e-105 386.7 780 73.5
Sabra14G0088000 Salix brachista HOM05D004127 ORTHO05D005119 4.1e-105 386.7 792 74.1
CsaV3_7G030080 Cucumis sativus L. HOM05D004127 ORTHO05D005119 5.3e-105 386.3 781 73.0
Oeu058159.1 Olea europaea HOM05D004127 ORTHO05D005119 5.3e-105 386.3 775 73.7
CiPaw.07G119200 Carya illinoinensis HOM05D004127 ORTHO05D005119 4.5e-104 383.3 702 80.1
FAN23G1564 Fragaria x ananassa HOM05D004127 ORTHO05D005119 1.3e-103 381.7 784 73.3
PSO357G0209 Papaver somniferum HOM05D004127 ORTHO05D005119 1.7e-103 381.3 781 73.0
FvH4_1g27040 Fragaria vesca HOM05D004127 ORTHO05D005119 3.8e-103 380.2 784 73.2
Carub.0004s1272 Capsella rubella HOM05D004127 ORTHO05D005119 5.0e-103 379.8 711 77.9
Sed0018206 Sechium edule HOM05D004127 ORTHO05D005119 6.5e-103 379.4 786 72.5
CSS0010117 Camellia sinensis var. sinensis HOM05D004127 ORTHO05D005119 8.5e-103 379.0 712 77.8
AL4G26650 Arabidopsis lyrata HOM05D004127 ORTHO05D005119 1.4e-102 378.3 710 77.0
Lj2C1208T0 Lonicera japonica HOM05D004127 ORTHO05D005119 1.9e-102 377.9 763 74.3
FAN19G1378 Fragaria x ananassa HOM05D004127 ORTHO05D005119 2.5e-102 377.5 784 73.1
FAN28G2982 Fragaria x ananassa HOM05D004127 ORTHO05D005119 2.5e-102 377.5 785 73.0
Aa31LG1G8250 Aethionema arabicum HOM05D004127 ORTHO05D005119 3.2e-102 377.1 799 72.3
Cc01_g21590 Coffea canephora HOM05D004127 ORTHO05D005119 4.2e-102 376.7 787 72.9
Sp4g13890 Schrenkiella parvula HOM05D004127 ORTHO05D005119 4.2e-102 376.7 785 72.5
FAN26G0855 Fragaria x ananassa HOM05D004127 ORTHO05D005119 5.5e-102 376.3 789 72.8
BolC4t27597H Brassica oleracea HOM05D004127 ORTHO05D005119 9.4e-102 375.6 760 74.9
MBI18_g03637_MAGBIO Magnolia biondii HOM05D004127 ORTHO05D005119 2.1e-101 374.4 785 73.5
BcaC02g07981 Brassica carinata HOM05D004127 ORTHO05D005119 1.0e-100 372.1 781 73.4
C04p61120 Brassica napus HOM05D004127 ORTHO05D005119 1.0e-100 372.1 781 73.4
Nitab4.5_0000363g0190 Nicotiana tabacum HOM05D004127 ORTHO05D005119 1.4e-100 371.7 777 72.1
SalBow3G1425 Salvia bowleyana HOM05D004127 ORTHO05D005119 3.9e-100 370.2 772 72.8
PSO170G0800 Papaver somniferum HOM05D004127 ORTHO05D005119 5.1e-100 369.8 781 72.7
CiPaw.08G088200 Carya illinoinensis HOM05D004127 ORTHO05D005119 1.1e-99 368.6 703 75.7
Eucgr.H00998 Eucalyptus grandis HOM05D004127 ORTHO05D005119 1.1e-99 368.6 681 73.4
AT2G31400 Arabidopsis thaliana HOM05D004127 ORTHO05D005119 1.5e-99 368.2 710 77.6
HanXRQChr10g0285041 Helianthus annuus HOM05D004127 ORTHO05D005119 1.5e-99 368.2 774 74.3
Nitab4.5_0007407g0040 Nicotiana tabacum HOM05D004127 ORTHO05D005119 1.5e-99 368.2 777 72.2
Migut.D00068 Erythranthe guttata HOM05D004127 ORTHO05D005119 2.5e-99 367.5 779 72.4
Sopen06g004180 Solanum pennellii HOM05D004127 ORTHO05D005119 2.5e-99 367.5 776 72.9
A04p24290 Brassica napus HOM05D004127 ORTHO05D005119 3.7e-98 363.6 781 72.1
A05p14200 Brassica napus HOM05D004127 ORTHO05D005119 8.2e-98 362.5 715 77.9
BraA05t20351Z Brassica rapa HOM05D004127 ORTHO05D005119 1.1e-97 362.1 775 73.4
ECA247G3842 Erigeron canadensis HOM05D004127 ORTHO05D005119 1.4e-97 361.7 774 73.9
BcaB06g28547 Brassica carinata HOM05D004127 ORTHO05D005119 1.8e-97 361.3 780 72.6
Lsat_1_v5_gn_9_4701 Lactuca sativa HOM05D004127 ORTHO05D005119 4.1e-97 360.1 786 71.2
CARHR125030 Cardamine hirsuta HOM05D004127 ORTHO05D005119 6.9e-97 359.4 710 77.2
Thhalv10016219m.g Eutrema salsugineum HOM05D004127 ORTHO05D005119 6.9e-97 359.4 776 72.9
C04p18930 Brassica napus HOM05D004127 ORTHO05D005119 3.4e-96 357.1 774 73.3
BolC4t23423H Brassica oleracea HOM05D004127 ORTHO05D005119 3.4e-96 357.1 774 73.3
BcaC02g11240 Brassica carinata HOM05D004127 ORTHO05D005119 4.5e-96 356.7 714 77.3
CDE08G0979 Ceratophyllum demersum HOM05D004127 ORTHO05D005119 4.5e-96 356.7 719 69.3
Peaxi162Scf00058g02410 Petunia axillaris HOM05D004127 ORTHO05D005119 5.0e-95 353.2 777 73.4
ATR0693G036 Amborella trichopoda HOM05D004127 ORTHO05D005119 1.9e-94 351.3 771 72.2
MSTRG.21699 Avicennia marina HOM05D004127 ORTHO05D005119 5.5e-94 349.7 695 76.3
BcaB02g10389 Brassica carinata HOM05D004127 ORTHO05D005119 7.2e-94 349.4 711 77.4
DCAR_012332 Daucus carota HOM05D004127 ORTHO05D005119 4.7e-93 346.7 682 68.5
Thhalv10016252m.g Eutrema salsugineum HOM05D004127 ORTHO05D005119 3.3e-91 340.5 780 57.6
PGSC0003DMG402007298 Solanum tuberosum HOM05D004127 ORTHO05D005119 5.7e-91 339.7 679 78.1
Rhsim01G0292100 Rhododendron simsii HOM05D004127 ORTHO05D005119 4.8e-90 336.7 677 77.3
Solyc06g009520.3 Solanum lycopersicum HOM05D004127 ORTHO05D005119 4.8e-90 336.7 679 77.9
BraA04t17948Z Brassica rapa HOM05D004127 ORTHO05D005119 3.1e-89 334.0 682 77.9
Atru.BG.78.p Acer truncatum HOM05D004127 ORTHO05D005119 1.2e-88 332.0 643 76.4
Lj1g0020612 Lotus japonicus HOM05D004127 ORTHO05D005119 2.0e-88 331.3 700 73.3
Dinv10119 Davidia involucrata HOM05D004127 ORTHO05D005119 2.7e-85 320.9 732 74.6
GSVIVG01028141001 Vitis vinifera HOM05D004127 ORTHO05D005119 6.1e-85 319.7 192 79.2
CAN.G1280.36 Capsicum annuum HOM05D004127 ORTHO05D005119 9.7e-83 312.4 679 76.6
CDE02G4605 Ceratophyllum demersum HOM05D004127 ORTHO05D005119 2.2e-82 311.2 226 68.6
CSS0036979 Camellia sinensis var. sinensis HOM05D004127 ORTHO05D005119 7.0e-81 306.2 217 69.6
MSTRG.18089 Avicennia marina HOM05D004127 ORTHO05D005119 5.9e-80 303.1 836 65.9
vmacro15103 Vaccinium macrocarpon HOM05D004127 ORTHO05D005119 3.8e-79 300.4 706 70.0
Lalb_Chr10g0092591 Lupinus albus HOM05D004127 ORTHO05D005119 5.3e-73 280.0 228 61.8
Medtr7g017530 Medicago truncatula HOM05D004127 ORTHO05D005119 5.0e-71 273.5 195 66.7
arahy.Tifrunner.gnm1.ann1.1I1C4M Arachis hypogaea HOM05D004127 ORTHO05D005119 3.2e-70 270.8 217 64.5
arahy.Tifrunner.gnm1.ann1.X62M7H Arachis hypogaea HOM05D004127 ORTHO05D005119 4.2e-70 270.4 217 64.1
Psat0s287g0280 Pisum sativum HOM05D004127 ORTHO05D005119 2.1e-69 268.1 215 59.5
TPR.G3276 Trifolium pratense HOM05D004127 ORTHO05D005119 4.0e-68 263.8 197 63.5
Medtr7g017570 Medicago truncatula HOM05D004127 ORTHO05D005119 3.4e-67 260.8 710 62.8
SGA_v2.0_scaffold334G49080 Striga asiatica HOM05D004127 ORTHO05D005119 4.4e-67 260.4 633 76.6
Ca_06960_v3 Cicer arietinum L. HOM05D004127 ORTHO05D005119 5.4e-65 253.4 191 64.4
Glyma.08G254000 Glycine max HOM05D004127 ORTHO05D005119 2.3e-63 248.1 230 53.9
EL10As5g23557 Beta vulgaris HOM05D004127 ORTHO05D005119 7.2e-62 243.0 135 84.4
Phvul.008G024400 Phaseolus vulgaris HOM05D004127 ORTHO05D005119 1.6e-61 241.9 232 52.2
Glyma.18G276500 Glycine max HOM05D004127 ORTHO05D005119 2.1e-61 241.5 228 52.2
Os12g0562300 Oryza sativa ssp. japonica HOM05D004127 ORTHO05D005119 2.1e-61 241.5 218 58.3
Zm00001eb028500 Zea mays HOM05D004127 ORTHO05D005119 2.1e-61 241.5 166 69.3
VMungo1383G2579 Vigna mungo HOM05D004127 ORTHO05D005119 6.1e-61 240.0 229 52.8
Medtr7g017525 Medicago truncatula HOM05D004127 ORTHO05D005119 3.0e-60 237.7 154 71.4
Actinidia21391 Actinidia chinensis HOM05D004127 ORTHO05D005119 1.5e-59 235.3 218 58.7
AagrBONN_evm.TU.Sc2ySwM_117.2521 Anthoceros agrestis HOM05D004127 ORTHO05D005119 3.4e-59 234.2 169 66.3
HPP92_017249 Vanilla planifolia HOM05D004127 ORTHO05D005119 3.4e-59 234.2 199 59.3
HPP92_017253 Vanilla planifolia HOM05D004127 ORTHO05D005119 2.2e-58 231.5 199 58.8
Mapoly0036s0086 Marchantia polymorpha HOM05D004127 ORTHO05D005119 1.2e-56 225.7 168 64.9
Pp3c6_15900 Physcomitrium patens HOM05D004127 ORTHO05D005119 2.3e-55 221.5 178 58.4
TAR362G1247 Trochodendron aralioides HOM05D004127 ORTHO05D005119 4.1e-49 200.7 212 55.2
Sed0015183 Sechium edule HOM05D004127 ORTHO05D005119 2.0e-48 198.4 209 53.6
Cpa.g.sc18.78 Carica papaya HOM05D004127 ORTHO05D005119 6.0e-48 196.8 249 47.0
Actinidia20981 Actinidia chinensis HOM05D004127 ORTHO05D005119 7.3e-46 189.9 182 57.1
Oeu048867.1 Olea europaea HOM05D004127 ORTHO05D005119 2.3e-44 184.9 159 60.4
MD17G1277600 Malus domestica HOM05D004127 ORTHO05D005119 3.2e-41 174.5 209 49.3
SMO365G0082 Selaginella moellendorffii HOM05D004127 ORTHO05D005119 7.3e-38 163.3 174 50.6
CBR_g9159 Chara braunii HOM05D004127 ORTHO05D005119 2.1e-37 161.8 171 48.0
TAR362G1073 Trochodendron aralioides HOM05D004127 ORTHO05D005119 1.4e-33 149.1 90 74.4
SEGI_11136 Sequoiadendron giganteum HOM05D004127 ORTHO05D005119 1.1e-28 132.9 148 48.0
vmacro23006 Vaccinium macrocarpon HOM05D004127 ORTHO05D005119 8.9e-28 129.8 113 56.6
SEGI_26777 Sequoiadendron giganteum HOM05D004127 ORTHO05D005119 6.4e-26 123.6 100 61.0
Oeu044735.1 Olea europaea HOM05D004127 ORTHO05D005119 1.2e-24 119.4 215 40.0
Pp3c5_16950 Physcomitrium patens HOM05D004127 ORTHO05D005119 3.5e-24 117.9 143 48.3
SEGI_31801 Sequoiadendron giganteum HOM05D004127 ORTHO05D005119 1.5e-19 102.4 62 74.2
Psat4g056960 Pisum sativum HOM05D004127 ORTHO05D005119 9.9e-19 99.8 92 52.2
BcaC01g05953 Brassica carinata HOM05D004127 ORTHO05D005119 1.4e-17 95.9 89 52.8
BraA06t25679Z Brassica rapa HOM05D004127 ORTHO05D005119 9.6e-14 83.2 50 76.0
Mapoly0003s0152 Marchantia polymorpha HOM05D006217 ORTHO05D008480 8.1e-13 80.1 145 31.7
Pp3c14_15490 Physcomitrium patens HOM05D004127 ORTHO05D005119 1.2e-11 76.3 158 29.1
Prupe.5G181900 Prunus persica HOM05D006217 ORTHO05D008480 1.3e-10 72.8 165 28.5
Nn4g22966 Nelumbo nucifera HOM05D006217 ORTHO05D008480 2.2e-10 72.0 165 27.9
RcHm_v2.0_Chr7g0179951 Rosa chinensis HOM05D006217 ORTHO05D008480 2.2e-10 72.0 166 28.9
CSS0026115 Camellia sinensis var. sinensis HOM05D006217 ORTHO05D008480 2.9e-10 71.6 170 28.2
CSS0050348 Camellia sinensis var. sinensis HOM05D006217 ORTHO05D008480 2.9e-10 71.6 170 28.2
FvH4_5g16180 Fragaria vesca HOM05D006217 ORTHO05D008480 4.9e-10 70.9 166 28.9
CSS0020542 Camellia sinensis var. sinensis HOM05D006217 ORTHO05D008480 8.4e-10 70.1 165 27.3
BolC4t23421H Brassica oleracea HOM05D004127 ORTHO05D005119 1.9e-09 68.9 51 64.7
BolC4t23420H Brassica oleracea HOM05D009194 ORTHO05D024456 3.2e-09 68.2 71 56.3
SEGI_07964 Sequoiadendron giganteum HOM05D006217 ORTHO05D008480 4.2e-09 67.8 139 31.7
C01p31430 Brassica napus HOM05D004127 ORTHO05D005119 2.7e-08 65.1 57 56.1
CANSAT80G1888 Cannabis sativa HOM05D006217 ORTHO05D008480 2.7e-08 65.1 146 26.7
Pp3c17_2130 Physcomitrium patens HOM05D004127 ORTHO05D023528 4.6e-08 64.3 160 30.0
Pp3c4_4900 Physcomitrium patens HOM05D006217 ORTHO05D005119 6.0e-08 63.9 129 27.1
Medtr6g016955 Medicago truncatula HOM05D004127 ORTHO05D005119 7.9e-08 63.5 61 52.5
QL10p013967 Quercus lobata HOM05D006217 ORTHO05D008480 7.9e-08 63.5 135 28.1
HPP92_019917 Vanilla planifolia HOM05D006217 ORTHO05D008480 1.0e-07 63.2 139 28.8
MBI15_g21026_MAGBIO Magnolia biondii HOM05D006217 ORTHO05D008480 1.8e-07 62.4 143 28.7
Mapoly0009s0209 Marchantia polymorpha HOM05D004127 ORTHO05D043990 1.8e-07 62.4 175 30.3
Phvul.003G195800 Phaseolus vulgaris HOM05D006217 ORTHO05D008480 3.9e-07 61.2 153 26.1
Os03g0824100 Oryza sativa ssp. japonica HOM05D006217 ORTHO05D008480 6.7e-07 60.5 163 25.2
Cpa.g.sc35.13 Carica papaya HOM05D006217 ORTHO05D008480 1.5e-06 59.3 102 29.4
CBR_g60687 Chara braunii HOM05D001740 ORTHO05D001468 1.9e-06 58.9 86 36.0
unitig_750.g28482 Utricularia gibba HOM05D006217 ORTHO05D008480 1.9e-06 58.9 102 30.4
BcaC08g46908 Brassica carinata HOM05D006217 ORTHO05D008480 2.5e-06 58.5 102 31.4
Mapoly0059s0080 Marchantia polymorpha HOM05D001779 ORTHO05D023528 3.3e-06 58.2 147 29.9
CBR_g31394 Chara braunii HOM05D004127 ORTHO05D005119 5.6e-06 57.4 106 30.2
AagrBONN_evm.TU.Sc2ySwM_117.1400 Anthoceros agrestis HOM05D006217 ORTHO05D023528 7.4e-06 57.0 172 29.1
Glyma.05G032300 Glycine max HOM05D006217 ORTHO05D008480 7.4e-06 57.0 102 29.4
Glyma.17G094300 Glycine max HOM05D006217 ORTHO05D008480 7.4e-06 57.0 102 30.4


User provided reference genes

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