Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc24g0002820 Simmondsia chinensis HOM05D002102 ORTHO05D008242 4.3e-128 461.5 252 100.0
TAR627G1208 Trochodendron aralioides HOM05D002102 ORTHO05D008242 2.6e-64 249.6 246 59.3
Nn7g38425 Nelumbo nucifera HOM05D002102 ORTHO05D008242 5.3e-62 241.9 251 59.8
GSVIVG01037088001 Vitis vinifera HOM05D002102 ORTHO05D008242 2.6e-61 239.6 185 69.2
arahy.Tifrunner.gnm1.ann1.1TYS6L Arachis hypogaea HOM05D002102 ORTHO05D008242 7.7e-61 238.0 249 59.8
arahy.Tifrunner.gnm1.ann1.N8G6CJ Arachis hypogaea HOM05D002102 ORTHO05D008242 1.3e-60 237.3 235 60.9
QL11p010809 Quercus lobata HOM05D002102 ORTHO05D008242 1.7e-60 236.9 174 72.4
Ah.06g191610 Amaranthus hybridus HOM05D002851 ORTHO05D003084 2.9e-60 236.1 254 57.5
Actinidia34700 Actinidia chinensis HOM05D002102 ORTHO05D008242 8.5e-60 234.6 245 56.7
CSS0016773 Camellia sinensis var. sinensis HOM05D002102 ORTHO05D008242 1.9e-59 233.4 246 54.9
PGR004G2223 Punica granatum HOM05D002102 ORTHO05D008242 1.9e-59 233.4 216 59.7
EL10Ac4g09967 Beta vulgaris HOM05D002102 ORTHO05D008242 3.2e-59 232.6 243 56.8
Glyma.08G267700 Glycine max HOM05D002102 ORTHO05D008242 5.5e-59 231.9 180 66.7
Ciclev10016300m.g Citrus clementina HOM05D002102 ORTHO05D008242 1.6e-58 230.3 188 70.2
CsaV3_6G053190 Cucumis sativus L. HOM05D002102 ORTHO05D008242 2.1e-58 229.9 147 78.2
Lj4g0016411 Lotus japonicus HOM05D002102 ORTHO05D008242 2.7e-58 229.6 176 67.6
HanXRQChr09g0257721 Helianthus annuus HOM05D002102 ORTHO05D008242 3.6e-58 229.2 147 78.9
Lalb_Chr21g0315091 Lupinus albus HOM05D002102 ORTHO05D008242 6.1e-58 228.4 148 76.4
Peaxi162Scf00313g00048 Petunia axillaris HOM05D002102 ORTHO05D008242 1.0e-57 227.6 148 79.7
CiPaw.09G140600 Carya illinoinensis HOM05D002102 ORTHO05D008242 1.4e-57 227.3 148 78.4
Eucgr.E03887 Eucalyptus grandis HOM05D002102 ORTHO05D008242 1.4e-57 227.3 151 76.8
Glyma.16G094300 Glycine max HOM05D002102 ORTHO05D008242 1.8e-57 226.9 180 66.1
Manes.03G073000 Manihot esculenta HOM05D002102 ORTHO05D008242 2.3e-57 226.5 257 56.0
Nitab4.5_0002246g0020 Nicotiana tabacum HOM05D002102 ORTHO05D008242 3.9e-57 225.7 148 76.4
CANSAT35G0655 Cannabis sativa HOM05D002102 ORTHO05D008242 6.7e-57 224.9 171 69.6
Sed0010823 Sechium edule HOM05D002102 ORTHO05D008242 6.7e-57 224.9 151 75.5
Gohir.D02G240400 Gossypium hirsutum HOM05D002102 ORTHO05D008242 8.8e-57 224.6 186 65.1
TWI63G1577 Tripterygium wilfordii HOM05D002102 ORTHO05D008242 8.8e-57 224.6 149 75.2
Haze_05188 Corylus avellana HOM05D002102 ORTHO05D008242 1.1e-56 224.2 183 66.7
Ca_22534_v3 Cicer arietinum L. HOM05D002102 ORTHO05D008242 1.5e-56 223.8 151 74.2
Cc09_g04620 Coffea canephora HOM05D002102 ORTHO05D008242 2.6e-56 223.0 259 52.5
MELO3C006996.2 Cucumis melo HOM05D002102 ORTHO05D008242 2.6e-56 223.0 145 77.2
PGSC0003DMG402011260 Solanum tuberosum HOM05D002102 ORTHO05D008242 3.3e-56 222.6 237 55.3
Aqoxy1G01357 Aquilegia oxysepala HOM05D002102 ORTHO05D008242 4.4e-56 222.2 245 54.7
Medtr8g070680 Medicago truncatula HOM05D002102 ORTHO05D008242 4.4e-56 222.2 147 76.9
Lsat_1_v5_gn_8_106940 Lactuca sativa HOM05D002102 ORTHO05D008242 5.7e-56 221.9 148 75.7
Gohir.A03G218300 Gossypium hirsutum HOM05D002102 ORTHO05D008242 7.4e-56 221.5 186 64.5
Solyc10g005180.3 Solanum lycopersicum HOM05D002102 ORTHO05D008242 7.4e-56 221.5 146 76.7
Gorai.005G268700 Gossypium raimondii HOM05D002102 ORTHO05D008242 9.7e-56 221.1 147 75.5
Nitab4.5_0001299g0100 Nicotiana tabacum HOM05D002102 ORTHO05D008242 9.7e-56 221.1 243 56.0
Phvul.003G275400 Phaseolus vulgaris HOM05D002102 ORTHO05D008242 1.3e-55 220.7 152 75.7
Psat0s2609g0120 Pisum sativum HOM05D002102 ORTHO05D008242 1.3e-55 220.7 146 74.7
Sabra01G0052500 Salix brachista HOM05D002102 ORTHO05D008242 1.7e-55 220.3 149 75.2
Sopen10g001170 Solanum pennellii HOM05D002102 ORTHO05D008242 1.7e-55 220.3 146 76.0
COL.COLO4_25027 Corchorus olitorius HOM05D002102 ORTHO05D008242 2.2e-55 219.9 148 76.4
TPR.G19825 Trifolium pratense HOM05D002102 ORTHO05D008242 2.2e-55 219.9 236 56.4
Atru.chr10.236 Acer truncatum HOM05D002102 ORTHO05D008242 3.7e-55 219.2 152 72.4
Cpa.g.sc30.78 Carica papaya HOM05D002102 ORTHO05D008242 3.7e-55 219.2 147 75.5
Potri.001G074200 Populus trichocarpa HOM05D002102 ORTHO05D008242 3.7e-55 219.2 149 74.5
PSO170G6365 Papaver somniferum HOM05D002102 ORTHO05D008242 1.1e-54 217.6 159 68.6
ClCG01G025950 Citrullus lanatus HOM05D002102 ORTHO05D008242 1.4e-54 217.2 147 76.2
PSO675G4370 Papaver somniferum HOM05D002102 ORTHO05D008242 1.4e-54 217.2 159 68.6
Rhsim02G0171500 Rhododendron simsii HOM05D002102 ORTHO05D008242 1.4e-54 217.2 246 56.1
ECA232G0416 Erigeron canadensis HOM05D002102 ORTHO05D008242 3.5e-53 212.6 148 70.9
FAN25G3128 Fragaria x ananassa HOM05D002102 ORTHO05D008242 3.5e-53 212.6 150 72.7
Oeu023527.1 Olea europaea HOM05D002102 ORTHO05D008242 3.5e-53 212.6 149 73.8
RcHm_v2.0_Chr5g0021821 Rosa chinensis HOM05D002102 ORTHO05D008242 4.5e-53 212.2 152 71.1
Os01g0798500 Oryza sativa ssp. japonica HOM05D002102 ORTHO05D008242 5.9e-53 211.8 195 60.5
vmacro11020 Vaccinium macrocarpon HOM05D002102 ORTHO05D008242 5.9e-53 211.8 269 53.2
FvH4_3g13341 Fragaria vesca HOM05D002102 ORTHO05D008242 7.7e-53 211.5 150 72.0
FAN11G2372 Fragaria x ananassa HOM05D002102 ORTHO05D008242 7.7e-53 211.5 150 72.0
FAN16G2960 Fragaria x ananassa HOM05D002102 ORTHO05D008242 7.7e-53 211.5 152 71.1
Thecc.02G001200 Theobroma cacao HOM05D002102 ORTHO05D008242 1.7e-52 210.3 251 57.0
CARHR178230 Cardamine hirsuta HOM05D002102 ORTHO05D008242 6.5e-52 208.4 158 67.7
Migut.M02036 Erythranthe guttata HOM05D002102 ORTHO05D008242 1.1e-51 207.6 225 55.1
MD10G1224400 Malus domestica HOM05D002102 ORTHO05D008242 1.1e-51 207.6 157 68.8
Thhalv10000983m.g Eutrema salsugineum HOM05D002102 ORTHO05D008242 1.9e-51 206.8 147 71.4
AL8G14900 Arabidopsis lyrata HOM05D002102 ORTHO05D008242 4.2e-51 205.7 158 67.1
CDE11G0809 Ceratophyllum demersum HOM05D002102 ORTHO05D008242 4.2e-51 205.7 183 61.7
BcaB07g30508 Brassica carinata HOM05D002102 ORTHO05D008242 5.5e-51 205.3 144 72.2
Aa31LG9G8520 Aethionema arabicum HOM05D002102 ORTHO05D008242 7.2e-51 204.9 153 69.3
A06p47030 Brassica napus HOM05D002102 ORTHO05D008242 9.4e-51 204.5 144 71.5
BcaC06g34527 Brassica carinata HOM05D002102 ORTHO05D008242 1.2e-50 204.1 144 71.5
C07p27540 Brassica napus HOM05D002102 ORTHO05D008242 1.2e-50 204.1 144 71.5
BolC7t43285H Brassica oleracea HOM05D002102 ORTHO05D008242 1.2e-50 204.1 144 71.5
Carub.0008s0361 Capsella rubella HOM05D002102 ORTHO05D008242 2.1e-50 203.4 158 65.8
Sp2g09460 Schrenkiella parvula HOM05D002102 ORTHO05D008242 2.7e-50 203.0 144 70.8
AT5G44650 Arabidopsis thaliana HOM05D002102 ORTHO05D008242 3.6e-50 202.6 158 64.6
BcaC06g31600 Brassica carinata HOM05D002102 ORTHO05D008242 6.1e-50 201.8 144 70.8
Zm00001eb150810 Zea mays HOM05D002102 ORTHO05D008242 1.4e-49 200.7 174 61.5
Prupe.4G120800 Prunus persica HOM05D002102 ORTHO05D008242 2.0e-48 196.8 149 68.5
Dinv17885 Davidia involucrata HOM05D002102 ORTHO05D008242 2.6e-48 196.4 126 77.8
DCAR_001256 Daucus carota HOM05D002102 ORTHO05D008242 7.5e-48 194.9 147 68.0
BraA06t27576Z Brassica rapa HOM05D002102 ORTHO05D008242 2.2e-47 193.4 163 63.2
PGSC0003DMG401011260 Solanum tuberosum HOM05D002102 ORTHO05D008242 3.1e-46 189.5 126 75.4
unitig_92.g28193 Utricularia gibba HOM05D002594 ORTHO05D003499 2.2e-44 183.3 161 60.9
AUR62040994 Chenopodium quinoa HOM05D002102 ORTHO05D008242 5.0e-44 182.2 122 73.8
AUR62042810 Chenopodium quinoa HOM05D002102 ORTHO05D008242 6.1e-42 175.3 121 71.9
Duzib132G0691 Durio zibethinus HOM05D002102 ORTHO05D008242 5.2e-41 172.2 188 55.9
SGA_v2.0_scaffold423G51451 Striga asiatica HOM05D002102 ORTHO05D008242 1.1e-38 164.5 150 62.0
Lj1A1152G38 Lonicera japonica HOM05D002102 ORTHO05D008242 1.6e-37 160.6 117 69.2
PSO541G0118 Papaver somniferum HOM05D002102 ORTHO05D008242 5.9e-37 158.7 249 44.2
FAN21G2948 Fragaria x ananassa HOM05D002102 ORTHO05D008242 2.9e-36 156.4 151 58.3
HPP92_001585 Vanilla planifolia HOM05D002102 ORTHO05D008242 3.8e-36 156.0 125 60.8
Mapoly0033s0150 Marchantia polymorpha HOM05D002102 ORTHO05D008242 1.2e-34 151.0 155 55.5
Pp3c15_7910 Physcomitrium patens HOM05D002102 ORTHO05D008242 6.1e-34 148.7 188 47.9
ATR0073G005 Amborella trichopoda HOM05D002102 ORTHO05D008242 2.6e-32 143.3 154 53.9
HPP92_001768 Vanilla planifolia HOM05D001389 ORTHO05D002892 9.8e-32 141.4 102 65.7
AagrBONN_evm.TU.Sc2ySwM_368.1584 Anthoceros agrestis HOM05D002102 ORTHO05D008242 2.2e-31 140.2 178 47.2
MBI02_g17886_MAGBIO Magnolia biondii HOM05D002102 ORTHO05D008242 4.9e-31 139.0 188 47.3
RcHm_v2.0_Chr5g0021891 Rosa chinensis HOM05D002102 ORTHO05D008242 4.1e-30 136.0 88 75.0
Oeu011782.1 Olea europaea HOM05D002102 ORTHO05D008242 7.0e-30 135.2 132 59.8
RcHm_v2.0_Chr5g0021971 Rosa chinensis HOM05D002102 ORTHO05D008242 3.6e-26 122.9 77 77.9
SEGI_24162 Sequoiadendron giganteum HOM05D002102 ORTHO05D008242 4.0e-25 119.4 92 64.1
Hund01844 Selenicereus undatus HOM05D002102 ORTHO05D008242 8.9e-25 118.2 66 89.4
Eucgr.L03440 Eucalyptus grandis HOM05D002102 ORTHO05D008242 1.7e-23 114.0 69 81.2
MD05G1242700 Malus domestica HOM05D002102 ORTHO05D004119 1.0e-20 104.8 81 65.4
Actinidia31356 Actinidia chinensis HOM05D002102 ORTHO05D008242 5.6e-19 99.0 98 60.2
MD05G1242600 Malus domestica HOM05D002102 ORTHO05D008242 6.8e-17 92.0 65 76.9
C02p45240 Brassica napus HOM05D002102 ORTHO05D008242 1.4e-14 84.3 106 48.1
Actinidia31357 Actinidia chinensis HOM05D002102 ORTHO05D008242 5.4e-14 82.4 56 75.0
RcHm_v2.0_Chr5g0021961 Rosa chinensis HOM05D002102 ORTHO05D008242 1.2e-13 81.3 68 60.3
Cre06.g280650 Chlamydomonas reinhardtii HOM05D002102 ORTHO05D008242 1.6e-13 80.9 93 51.6
CBR_g21832 Chara braunii HOM05D002102 ORTHO05D008242 4.6e-13 79.3 147 39.5
BraA02t07887Z Brassica rapa HOM05D002102 ORTHO05D008242 2.3e-12 77.0 89 47.2
BolC2t10554H Brassica oleracea HOM05D002102 ORTHO05D008242 3.9e-12 76.3 106 47.2
Nitab4.5_0007687g0040 Nicotiana tabacum HOM05D002102 ORTHO05D008242 8.1e-10 68.6 43 76.7
Nitab4.5_0001815g0140 Nicotiana tabacum HOM05D002102 ORTHO05D004119 5.2e-09 65.9 47 66.0
ATR0109G022 Amborella trichopoda HOM05D002102 ORTHO05D008242 6.8e-09 65.5 56 55.4
RcHm_v2.0_Chr5g0021881 Rosa chinensis HOM05D002102 ORTHO05D008242 1.5e-08 64.3 63 54.0
RcHm_v2.0_Chr5g0021951 Rosa chinensis HOM05D002102 ORTHO05D008242 1.5e-08 64.3 54 59.3
CANSAT25G0241 Cannabis sativa HOM05D002102 ORTHO05D008242 1.7e-07 60.8 51 70.6
AUR62041001 Chenopodium quinoa HOM05D002468 ORTHO05D009172 3.2e-06 56.6 38 71.1


User provided reference genes

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