Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc22g0004750 Simmondsia chinensis HOM05D002505 ORTHO05D007115 1.2e-149 533.1 267 100.0
Haze_09143 Corylus avellana HOM05D002505 ORTHO05D007115 6.0e-96 354.8 265 66.8
Actinidia22196 Actinidia chinensis HOM05D002505 ORTHO05D007115 2.5e-94 349.4 266 65.8
Cfa011943 Carpinus fangiana HOM05D002505 ORTHO05D007115 2.5e-94 349.4 265 66.4
CiPaw.11G114300 Carya illinoinensis HOM05D002505 ORTHO05D007115 5.6e-94 348.2 265 63.4
EL10Ac5g12461 Beta vulgaris HOM05D002505 ORTHO05D007115 7.3e-94 347.8 264 64.0
Prupe.5G127300 Prunus persica HOM05D002505 ORTHO05D007115 1.6e-93 346.7 265 63.8
TWI60G0007 Tripterygium wilfordii HOM05D002505 ORTHO05D007115 1.6e-93 346.7 265 63.8
MD06G1114600 Malus domestica HOM05D002505 ORTHO05D007115 2.8e-93 345.9 266 63.5
QL02p027659 Quercus lobata HOM05D002505 ORTHO05D007115 2.8e-93 345.9 266 65.0
AUR62019897 Chenopodium quinoa HOM05D002505 ORTHO05D007115 3.6e-93 345.5 265 66.4
AUR62007033 Chenopodium quinoa HOM05D002505 ORTHO05D007115 4.7e-93 345.1 265 65.7
GSVIVG01019628001 Vitis vinifera HOM05D002505 ORTHO05D007115 6.2e-93 344.7 265 63.0
FAN07G1120 Fragaria x ananassa HOM05D002505 ORTHO05D007115 1.4e-92 343.6 265 63.4
FAN17G1638 Fragaria x ananassa HOM05D002505 ORTHO05D007115 1.2e-91 340.5 265 63.0
CANSAT21G2418 Cannabis sativa HOM05D002505 ORTHO05D007115 5.8e-91 338.2 264 62.1
FvH4_4g16080 Fragaria vesca HOM05D002505 ORTHO05D007115 9.9e-91 337.4 265 63.0
FAN12G2820 Fragaria x ananassa HOM05D002505 ORTHO05D007115 9.9e-91 337.4 265 63.0
TAR375G0040 Trochodendron aralioides HOM05D002505 ORTHO05D007115 9.9e-91 337.4 267 62.2
Dinv25607 Davidia involucrata HOM05D002505 ORTHO05D007115 1.7e-90 336.7 265 63.4
Dinv37391 Davidia involucrata HOM05D002505 ORTHO05D007115 3.7e-90 335.5 236 68.6
Lj2A158G82 Lonicera japonica HOM05D002505 ORTHO05D007115 4.9e-90 335.1 267 61.4
vmacro11517 Vaccinium macrocarpon HOM05D002505 ORTHO05D007115 4.9e-90 335.1 265 61.5
Potri.003G145100 Populus trichocarpa HOM05D002505 ORTHO05D007115 1.1e-89 334.0 264 59.8
Cpa.g.sc175.6 Carica papaya HOM05D002505 ORTHO05D007115 2.4e-89 332.8 266 63.5
DCAR_009648 Daucus carota HOM05D002505 ORTHO05D007115 2.4e-89 332.8 265 60.8
Duzib205G1766 Durio zibethinus HOM05D002505 ORTHO05D007115 2.4e-89 332.8 264 61.0
CSS0047752 Camellia sinensis var. sinensis HOM05D002505 ORTHO05D007115 3.2e-89 332.4 264 62.5
Dinv11454 Davidia involucrata HOM05D002505 ORTHO05D007115 3.2e-89 332.4 265 62.6
Ciclev10020379m.g Citrus clementina HOM05D002505 ORTHO05D007115 4.1e-89 332.0 265 63.0
FAN22G1998 Fragaria x ananassa HOM05D002505 ORTHO05D007115 4.1e-89 332.0 265 61.5
TPR.G36929 Trifolium pratense HOM05D002505 ORTHO05D007115 1.2e-88 330.5 265 61.9
Sabra01G0062100 Salix brachista HOM05D002505 ORTHO05D007115 4.6e-88 328.6 264 59.8
Thecc.03G223700 Theobroma cacao HOM05D002505 ORTHO05D007115 6.0e-88 328.2 265 61.9
LjContig00141g0018407 Lotus japonicus HOM05D002505 ORTHO05D007115 2.3e-87 326.2 265 60.4
HanXRQChr02g0047181 Helianthus annuus HOM05D002505 ORTHO05D007115 6.6e-87 324.7 264 60.6
Cc00_g23270 Coffea canephora HOM05D002505 ORTHO05D007115 1.1e-86 323.9 262 60.7
arahy.Tifrunner.gnm1.ann1.31YZJ9 Arachis hypogaea HOM05D002505 ORTHO05D007115 1.5e-86 323.6 266 61.3
Ca_12555_v3 Cicer arietinum L. HOM05D002505 ORTHO05D007115 1.9e-86 323.2 264 59.8
Ca_12566_v3 Cicer arietinum L. HOM05D002505 ORTHO05D007115 1.9e-86 323.2 264 59.8
CAN.G567.73 Capsicum annuum HOM05D002505 ORTHO05D007115 2.5e-86 322.8 265 58.9
ECA240G2126 Erigeron canadensis HOM05D002505 ORTHO05D007115 2.5e-86 322.8 265 61.5
Eucgr.D01694 Eucalyptus grandis HOM05D002505 ORTHO05D007115 2.5e-86 322.8 265 59.2
Gohir.A12G238900 Gossypium hirsutum HOM05D002505 ORTHO05D007115 2.5e-86 322.8 264 60.6
arahy.Tifrunner.gnm1.ann1.Y3P1ER Arachis hypogaea HOM05D002505 ORTHO05D007115 3.3e-86 322.4 266 60.9
Gohir.D12G240000 Gossypium hirsutum HOM05D002505 ORTHO05D007115 7.3e-86 321.2 264 60.6
Psat6g045400 Pisum sativum HOM05D002505 ORTHO05D007115 7.3e-86 321.2 265 60.0
Peaxi162Scf00074g00358 Petunia axillaris HOM05D002505 ORTHO05D007115 3.6e-85 318.9 265 60.0
Medtr5g025880 Medicago truncatula HOM05D002505 ORTHO05D007115 4.7e-85 318.5 253 61.7
Aqoxy5G02423 Aquilegia oxysepala HOM05D002505 ORTHO05D007115 8.1e-85 317.8 264 58.3
Gorai.008G257100 Gossypium raimondii HOM05D002505 ORTHO05D007115 8.1e-85 317.8 264 60.2
Medtr1g032200 Medicago truncatula HOM05D002505 ORTHO05D007115 8.1e-85 317.8 264 60.6
Oeu010746.1 Olea europaea HOM05D002505 ORTHO05D007115 8.1e-85 317.8 265 60.8
Nitab4.5_0002728g0050 Nicotiana tabacum HOM05D002505 ORTHO05D007115 1.4e-84 317.0 265 60.4
Glyma.04G232000 Glycine max HOM05D002505 ORTHO05D007115 3.1e-84 315.8 264 60.2
Nitab4.5_0005042g0030 Nicotiana tabacum HOM05D002505 ORTHO05D007115 3.1e-84 315.8 244 62.3
Lalb_Chr17g0338531 Lupinus albus HOM05D002505 ORTHO05D007115 4.0e-84 315.5 265 61.1
PGR031G3103 Punica granatum HOM05D002505 ORTHO05D007115 6.8e-84 314.7 265 57.4
VMungo1309G3079 Vigna mungo HOM05D002505 ORTHO05D007115 6.8e-84 314.7 265 60.8
Glyma.06G132900 Glycine max HOM05D002505 ORTHO05D007115 8.9e-84 314.3 264 59.5
Manes.02G004600 Manihot esculenta HOM05D002505 ORTHO05D007115 8.9e-84 314.3 265 58.9
RcHm_v2.0_Chr7g0186571 Rosa chinensis HOM05D002505 ORTHO05D007115 2.6e-83 312.8 265 58.9
PGSC0003DMG400012246 Solanum tuberosum HOM05D002505 ORTHO05D007115 2.6e-83 312.8 265 57.7
Aqoxy5G01632 Aquilegia oxysepala HOM05D002505 ORTHO05D007115 9.9e-83 310.8 264 58.0
MSTRG.2011 Avicennia marina HOM05D002505 ORTHO05D007115 9.9e-83 310.8 253 59.7
Sed0001422 Sechium edule HOM05D002505 ORTHO05D007115 1.3e-82 310.5 266 60.5
Glyma.13G121900 Glycine max HOM05D002505 ORTHO05D007115 1.1e-81 307.4 264 58.7
Phvul.009G039500 Phaseolus vulgaris HOM05D002505 ORTHO05D007115 1.4e-81 307.0 265 58.9
SalBow6G5481 Salvia bowleyana HOM05D002505 ORTHO05D007115 1.4e-81 307.0 264 54.9
Sopen08g031180 Solanum pennellii HOM05D002505 ORTHO05D007115 1.4e-81 307.0 265 57.4
Solyc08g082960.3 Solanum lycopersicum HOM05D002505 ORTHO05D007115 1.9e-81 306.6 265 57.0
CsaV3_5G036540 Cucumis sativus L. HOM05D002505 ORTHO05D007115 2.1e-80 303.1 267 58.8
MELO3C012450.2 Cucumis melo HOM05D002505 ORTHO05D007115 2.3e-79 299.7 267 58.4
Hma1.2p1_0456F.1_g156510 Hydrangea macrophylla HOM05D002505 ORTHO05D007115 3.0e-79 299.3 225 68.0
Lalb_Chr10g0095811 Lupinus albus HOM05D002505 ORTHO05D007115 3.9e-79 298.9 263 57.0
ClCG05G020760 Citrullus lanatus HOM05D002505 ORTHO05D007115 6.6e-79 298.1 266 58.3
MBI04_g06931_MAGBIO Magnolia biondii HOM05D002505 ORTHO05D007115 1.1e-78 297.4 264 56.4
PSO339G4385 Papaver somniferum HOM05D002505 ORTHO05D007115 3.1e-76 289.3 267 53.6
Migut.J00879 Erythranthe guttata HOM05D002505 ORTHO05D007115 6.9e-76 288.1 265 53.2
FAN08G0319 Fragaria x ananassa HOM05D002505 ORTHO05D007115 2.6e-75 286.2 220 63.2
PSO384G5034 Papaver somniferum HOM05D002505 ORTHO05D007115 2.2e-74 283.1 267 52.8
SGA_v2.0_scaffold104G30125 Striga asiatica HOM05D002505 ORTHO05D007115 2.9e-74 282.7 264 52.7
Os10g0520700 Oryza sativa ssp. japonica HOM05D002505 ORTHO05D007115 1.1e-73 280.8 265 52.8
unitig_22.g5105 Utricularia gibba HOM05D002505 ORTHO05D007115 1.4e-73 280.4 267 56.6
Aa31LG1G18070 Aethionema arabicum HOM05D002505 ORTHO05D007115 1.9e-73 280.0 244 56.1
Zm00001eb021220 Zea mays HOM05D002505 ORTHO05D007115 9.3e-73 277.7 267 50.2
ATR0757G152 Amborella trichopoda HOM05D002505 ORTHO05D007115 1.2e-72 277.3 269 52.0
Lsat_1_v5_gn_6_9040 Lactuca sativa HOM05D002505 ORTHO05D007115 1.6e-72 276.9 264 53.0
Carub.0008s2460 Capsella rubella HOM05D002505 ORTHO05D007115 6.0e-72 275.0 238 58.4
COL.COLO4_10772 Corchorus olitorius HOM05D002505 ORTHO05D007115 1.7e-71 273.5 207 65.2
CARHR277730 Cardamine hirsuta HOM05D002505 ORTHO05D007115 3.0e-71 272.7 238 58.4
Nn4g26685 Nelumbo nucifera HOM05D002505 ORTHO05D007115 3.0e-71 272.7 197 67.0
THA.LOC104823623 Tarenaya hassleriana HOM05D002505 ORTHO05D007115 3.0e-71 272.7 244 54.1
A06p30440 Brassica napus HOM05D002505 ORTHO05D007115 5.1e-71 271.9 264 54.5
HPP92_022335 Vanilla planifolia HOM05D002505 ORTHO05D007115 5.1e-71 271.9 264 51.1
HPP92_022360 Vanilla planifolia HOM05D002505 ORTHO05D007115 5.1e-71 271.9 264 51.1
SEGI_04382 Sequoiadendron giganteum HOM05D002505 ORTHO05D007115 1.1e-70 270.8 290 47.9
BcaC01g02620 Brassica carinata HOM05D002505 ORTHO05D007115 1.3e-69 267.3 243 57.2
BolC3t18519H Brassica oleracea HOM05D002505 ORTHO05D007115 1.3e-69 267.3 264 53.8
BraA06t25993Z Brassica rapa HOM05D002505 ORTHO05D007115 1.3e-69 267.3 264 53.4
PSO017G1033 Papaver somniferum HOM05D002505 ORTHO05D007115 1.3e-69 267.3 242 55.0
C03p62620 Brassica napus HOM05D002505 ORTHO05D007115 1.6e-69 266.9 264 53.8
RcHm_v2.0_Chr7g0184121 Rosa chinensis HOM05D002505 ORTHO05D007115 3.6e-69 265.8 196 66.3
CDE11G0043 Ceratophyllum demersum HOM05D002505 ORTHO05D007115 4.8e-69 265.4 265 49.8
AL8G41060 Arabidopsis lyrata HOM05D002505 ORTHO05D007115 8.1e-69 264.6 243 55.6
FAN13G3213 Fragaria x ananassa HOM05D002505 ORTHO05D007115 2.4e-68 263.1 190 67.4
AT5G63830 Arabidopsis thaliana HOM05D002505 ORTHO05D007115 5.8e-67 258.5 238 55.5
Sp2g26890 Schrenkiella parvula HOM05D002505 ORTHO05D007115 7.6e-67 258.1 264 51.5
Potri.001G085800 Populus trichocarpa HOM05D002505 ORTHO05D007115 1.6e-64 250.4 185 63.2
Thhalv10004334m.g Eutrema salsugineum HOM05D002505 ORTHO05D007115 7.6e-59 231.5 245 50.6
vmacro04587 Vaccinium macrocarpon HOM05D002505 ORTHO05D007115 1.1e-57 227.6 259 48.3
AagrBONN_evm.TU.Sc2ySwM_368.1194 Anthoceros agrestis HOM05D002505 ORTHO05D007115 2.1e-56 223.4 269 46.8
SMO348G0019 Selaginella moellendorffii HOM05D002505 ORTHO05D007115 3.3e-54 216.1 237 47.7
RhsimUnG0115700 Rhododendron simsii HOM05D002505 ORTHO05D007115 1.6e-53 213.8 246 49.6
Mapoly0049s0078 Marchantia polymorpha HOM05D002505 ORTHO05D007115 3.1e-52 209.5 316 37.7
Pp3c16_17440 Physcomitrium patens HOM05D002505 ORTHO05D007115 1.9e-49 200.3 273 39.9
SEGI_16855 Sequoiadendron giganteum HOM05D002505 ORTHO05D007115 1.0e-42 177.9 131 63.4
Atru.chr5.483 Acer truncatum HOM05D002505 ORTHO05D007115 5.0e-42 175.6 132 65.2
Medtr1g090530 Medicago truncatula HOM05D002505 ORTHO05D007115 8.2e-37 158.3 190 45.8
FAN05G1175 Fragaria x ananassa HOM05D002505 ORTHO05D007115 1.2e-35 154.5 115 66.1
FAN14G3314 Fragaria x ananassa HOM05D002505 ORTHO05D007115 1.2e-32 144.4 138 53.6
CBR_g20449 Chara braunii HOM05D002505 ORTHO05D007115 1.4e-31 141.0 296 29.1
Actinidia04163 Actinidia chinensis HOM05D002436 ORTHO05D002754 8.8e-31 138.3 163 47.2
SMO285G0002 Selaginella moellendorffii HOM05D002505 ORTHO05D007115 7.7e-27 125.2 161 42.9
FvH4_5g11280 Fragaria vesca HOM05D002505 ORTHO05D007115 2.2e-26 123.6 252 31.7
MCO07G240 Micromonas commoda HOM05D002505 ORTHO05D007115 5.2e-23 112.5 254 31.9
BraA06t26113Z Brassica rapa HOM05D005837 ORTHO05D007594 2.2e-10 70.5 111 42.3
Oeu004999.3 Olea europaea HOM05D002505 ORTHO05D007115 5.0e-10 69.3 106 36.8
Cre08.g379050 Chlamydomonas reinhardtii HOM05D002505 ORTHO05D007115 1.5e-09 67.8 113 36.3
HanXRQChr03g0061211 Helianthus annuus HOM05D002505 ORTHO05D007115 7.2e-09 65.5 79 43.0
SMO348G0061 Selaginella moellendorffii HOM05D002505 ORTHO05D007115 4.7e-08 62.8 158 31.6


User provided reference genes

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