Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc22g0004440 Simmondsia chinensis HOM05D006045 ORTHO05D007678 2.2e-174 615.5 318 100.0
EL10Ac2g03023 Beta vulgaris HOM05D006045 ORTHO05D007678 1.1e-120 437.2 319 71.8
AUR62018119 Chenopodium quinoa HOM05D006045 ORTHO05D007678 3.2e-120 435.6 319 70.5
AUR62034450 Chenopodium quinoa HOM05D006045 ORTHO05D007678 2.3e-118 429.5 319 69.6
Hund15247 Selenicereus undatus HOM05D006045 ORTHO05D007678 2.5e-117 426.0 333 67.0
TAR623G1560 Trochodendron aralioides HOM05D006045 ORTHO05D007678 3.9e-110 402.1 319 67.7
Manes.09G092411 Manihot esculenta HOM05D006045 ORTHO05D007678 1.7e-102 376.7 318 64.2
CSS0032526 Camellia sinensis var. sinensis HOM05D006045 ORTHO05D007678 6.6e-102 374.8 314 64.0
CiPaw.09G195700 Carya illinoinensis HOM05D006045 ORTHO05D007678 3.3e-101 372.5 317 63.4
Potri.002G091400 Populus trichocarpa HOM05D006045 ORTHO05D007678 1.3e-100 370.5 317 63.7
Thecc.05G035700 Theobroma cacao HOM05D006045 ORTHO05D007678 3.6e-100 369.0 318 62.9
QL07p030118 Quercus lobata HOM05D006045 ORTHO05D007678 5.8e-98 361.7 316 60.4
GSVIVG01034130001 Vitis vinifera HOM05D006045 ORTHO05D007678 7.6e-98 361.3 318 61.3
DCAR_028758 Daucus carota HOM05D006045 ORTHO05D007678 1.7e-97 360.1 318 62.6
QL07p030894 Quercus lobata HOM05D006045 ORTHO05D007678 3.8e-97 359.0 318 60.7
MD12G1145400 Malus domestica HOM05D006045 ORTHO05D007678 4.9e-97 358.6 318 59.7
Nn2g11183 Nelumbo nucifera HOM05D006045 ORTHO05D007678 1.4e-96 357.1 319 62.1
PGSC0003DMG400008825 Solanum tuberosum HOM05D006045 ORTHO05D007678 1.4e-96 357.1 318 61.3
Gorai.009G406000 Gossypium raimondii HOM05D006045 ORTHO05D007678 2.7e-95 352.8 318 61.6
Oeu010102.1 Olea europaea HOM05D006045 ORTHO05D007678 7.9e-95 351.3 319 60.8
Prupe.6G259100 Prunus persica HOM05D006045 ORTHO05D007678 3.0e-94 349.4 318 60.1
Sopen09g005740 Solanum pennellii HOM05D006045 ORTHO05D007678 3.0e-94 349.4 318 60.1
Eucgr.K03104 Eucalyptus grandis HOM05D006045 ORTHO05D007678 3.9e-94 349.0 324 61.1
PGR004G1833 Punica granatum HOM05D006045 ORTHO05D007678 3.9e-94 349.0 317 61.8
Gohir.A04G065300 Gossypium hirsutum HOM05D006045 ORTHO05D007678 6.7e-94 348.2 317 60.9
Gohir.D04G102700 Gossypium hirsutum HOM05D006045 ORTHO05D007678 1.1e-93 347.4 318 60.7
CAN.G597.3 Capsicum annuum HOM05D006045 ORTHO05D007678 1.9e-93 346.7 318 59.4
FvH4_6g13250 Fragaria vesca HOM05D006045 ORTHO05D007678 1.9e-93 346.7 330 55.8
FAN14G1932 Fragaria x ananassa HOM05D006045 ORTHO05D007678 1.9e-93 346.7 330 55.8
TWI77G0138 Tripterygium wilfordii HOM05D006045 ORTHO05D007678 2.5e-93 346.3 318 61.0
vmacro08642 Vaccinium macrocarpon HOM05D006045 ORTHO05D007678 1.3e-92 344.0 321 58.3
Ciclev10011734m.g Citrus clementina HOM05D006045 ORTHO05D007678 1.6e-92 343.6 319 58.9
ECA248G0328 Erigeron canadensis HOM05D006045 ORTHO05D007678 1.6e-92 343.6 316 59.5
RcHm_v2.0_Chr3g0466081 Rosa chinensis HOM05D006045 ORTHO05D007678 4.8e-92 342.0 328 56.4
Solyc09g011020.4 Solanum lycopersicum HOM05D006045 ORTHO05D007678 8.1e-92 341.3 318 59.4
CANSAT35G0136 Cannabis sativa HOM05D006045 ORTHO05D007678 4.0e-91 339.0 320 61.2
Cc06_g02350 Coffea canephora HOM05D006045 ORTHO05D007678 1.5e-90 337.0 326 57.4
FAN02G2147 Fragaria x ananassa HOM05D006045 ORTHO05D007678 2.6e-90 336.3 330 54.5
MSTRG.19073 Avicennia marina HOM05D006045 ORTHO05D007678 3.8e-89 332.4 319 58.0
Duzib106G0862 Durio zibethinus HOM05D006045 ORTHO05D007678 3.8e-89 332.4 318 58.5
HanXRQChr13g0406931 Helianthus annuus HOM05D006045 ORTHO05D007678 6.4e-89 331.6 319 56.4
Migut.J00307 Erythranthe guttata HOM05D006045 ORTHO05D007678 9.3e-88 327.8 318 56.0
Lsat_1_v5_gn_5_154000 Lactuca sativa HOM05D006045 ORTHO05D007678 1.0e-86 324.3 316 56.6
SGA_v2.0_scaffold126G33761 Striga asiatica HOM05D006045 ORTHO05D007678 6.7e-86 321.6 321 54.8
PSO339G1759 Papaver somniferum HOM05D006045 ORTHO05D007678 8.7e-86 321.2 318 56.9
ATR0559G357 Amborella trichopoda HOM05D006045 ORTHO05D007678 1.6e-84 317.0 320 55.9
Rhsim04G0158800 Rhododendron simsii HOM05D006045 ORTHO05D007678 2.1e-84 316.6 384 49.7
CDE06G1975 Ceratophyllum demersum HOM05D006045 ORTHO05D007678 3.7e-84 315.8 320 56.2
MBI14_g08020_MAGBIO Magnolia biondii HOM05D006045 ORTHO05D007678 4.0e-83 312.4 322 56.5
Sabra02G0072200 Salix brachista HOM05D006045 ORTHO05D007678 7.6e-82 308.1 317 55.8
Sed0026133 Sechium edule HOM05D006045 ORTHO05D007678 4.9e-81 305.4 318 52.2
Lj3g0020199 Lotus japonicus HOM05D006045 ORTHO05D007678 8.4e-81 304.7 317 54.6
Lalb_Chr03g0042401 Lupinus albus HOM05D006045 ORTHO05D007678 3.2e-80 302.8 317 55.2
SHI12713 Sapria himalayana HOM05D006045 ORTHO05D007678 8.7e-78 294.7 329 54.1
Lj1g0013519 Lotus japonicus HOM05D006045 ORTHO05D007678 2.8e-76 289.7 317 52.7
THA.LOC104816254 Tarenaya hassleriana HOM05D006045 ORTHO05D007678 8.2e-76 288.1 318 50.3
CiPaw.09G197100 Carya illinoinensis HOM05D006045 ORTHO05D007678 1.1e-75 287.7 223 66.8
MELO3C009242.2 Cucumis melo HOM05D006045 ORTHO05D007678 1.2e-74 284.3 318 49.7
BcaB01g06214 Brassica carinata HOM05D006045 ORTHO05D007678 5.9e-74 282.0 318 52.2
Ca_07336_v3 Cicer arietinum L. HOM05D006045 ORTHO05D007678 1.7e-73 280.4 317 50.5
AT5G02130 Arabidopsis thaliana HOM05D006045 ORTHO05D007678 2.9e-73 279.6 318 50.6
arahy.Tifrunner.gnm1.ann1.H3QXFP Arachis hypogaea HOM05D006045 ORTHO05D007678 5.0e-73 278.9 318 49.4
BolC9t60170H Brassica oleracea HOM05D006045 ORTHO05D007678 8.5e-73 278.1 318 50.9
BraA03t09445Z Brassica rapa HOM05D006045 ORTHO05D007678 8.5e-73 278.1 319 50.8
Cfa017339 Carpinus fangiana HOM05D006045 ORTHO05D007678 2.5e-72 276.6 258 58.1
Psat3g136040 Pisum sativum HOM05D006045 ORTHO05D007678 3.2e-72 276.2 317 48.9
Haze_20828 Corylus avellana HOM05D006045 ORTHO05D007678 7.2e-72 275.0 258 57.8
Medtr7g062630 Medicago truncatula HOM05D006045 ORTHO05D007678 1.2e-71 274.2 317 48.9
BraA10t45376Z Brassica rapa HOM05D006045 ORTHO05D007678 1.6e-71 273.9 319 49.8
A10p33460 Brassica napus HOM05D006045 ORTHO05D007678 2.1e-71 273.5 319 50.5
C09p74360 Brassica napus HOM05D006045 ORTHO05D007678 3.6e-71 272.7 318 50.3
CARHR211230 Cardamine hirsuta HOM05D006045 ORTHO05D007678 4.6e-71 272.3 318 50.0
Sp6g40310 Schrenkiella parvula HOM05D006045 ORTHO05D007678 4.6e-71 272.3 318 49.4
Thhalv10013663m.g Eutrema salsugineum HOM05D006045 ORTHO05D007678 6.1e-71 271.9 318 50.6
A03p00550 Brassica napus HOM05D006045 ORTHO05D007678 1.0e-70 271.2 339 47.8
CsaV3_3G034720 Cucumis sativus L. HOM05D006045 ORTHO05D007678 1.0e-70 271.2 318 48.7
AL6G11360 Arabidopsis lyrata HOM05D006045 ORTHO05D007678 1.4e-70 270.8 318 49.4
Lj3A965G74 Lonicera japonica HOM05D006045 ORTHO05D007678 1.4e-70 270.8 224 63.8
C03p00810 Brassica napus HOM05D006045 ORTHO05D007678 2.3e-70 270.0 307 50.2
Carub.0006s0097 Capsella rubella HOM05D006045 ORTHO05D007678 3.0e-70 269.6 318 50.0
MD04G1132700 Malus domestica HOM05D006045 ORTHO05D007678 3.0e-70 269.6 259 57.5
Aa31LG1G22600 Aethionema arabicum HOM05D006045 ORTHO05D007678 5.7e-69 265.4 322 48.4
FAN05G2873 Fragaria x ananassa HOM05D006045 ORTHO05D007678 4.1e-67 259.2 208 63.5
HPP92_014298 Vanilla planifolia HOM05D006045 ORTHO05D007678 2.0e-66 256.9 257 54.9
Os05g0457700 Oryza sativa ssp. japonica HOM05D006045 ORTHO05D007678 2.7e-63 246.5 318 47.5
Glyma.18G185200 Glycine max HOM05D006045 ORTHO05D007678 6.1e-63 245.4 322 45.3
Nitab4.5_0003394g0010 Nicotiana tabacum HOM05D006045 ORTHO05D007678 1.7e-60 237.3 217 59.9
Nitab4.5_0000705g0060 Nicotiana tabacum HOM05D006045 ORTHO05D007678 3.7e-60 236.1 217 59.0
VMungo1383G2703 Vigna mungo HOM05D006045 ORTHO05D007678 1.4e-59 234.2 302 47.0
SEGI_25878 Sequoiadendron giganteum HOM05D006045 ORTHO05D007678 2.2e-57 226.9 329 41.3
Peaxi162Scf00527g00742 Petunia axillaris HOM05D006045 ORTHO05D007678 3.8e-57 226.1 217 56.7
BcaB01g06067 Brassica carinata HOM05D006045 ORTHO05D007678 6.5e-57 225.3 317 44.5
SalBow1G6939 Salvia bowleyana HOM05D006045 ORTHO05D007678 7.2e-56 221.9 218 56.0
Aqoxy1G00880 Aquilegia oxysepala HOM05D006045 ORTHO05D007678 2.1e-55 220.3 260 50.8
arahy.Tifrunner.gnm1.ann1.FBGI2B Arachis hypogaea HOM05D006045 ORTHO05D007678 1.4e-54 217.6 233 49.4
Rhsim04G0160900 Rhododendron simsii HOM05D006045 ORTHO05D007678 1.1e-51 208.0 337 42.1
ClCG10G021320 Citrullus lanatus HOM05D006045 ORTHO05D007678 1.6e-50 204.1 426 35.4
Medtr6g445490 Medicago truncatula HOM05D006045 ORTHO05D007678 1.4e-46 191.0 321 39.9
TPR.G18356 Trifolium pratense HOM05D006045 ORTHO05D007678 4.4e-45 186.0 216 47.7
SMO361G0160 Selaginella moellendorffii HOM05D006045 ORTHO05D007678 7.5e-37 158.7 314 37.3
SMO361G0306 Selaginella moellendorffii HOM05D006045 ORTHO05D007678 4.1e-35 152.9 315 36.8
Gohir.A04G065314 Gossypium hirsutum HOM05D006045 ORTHO05D007678 2.9e-33 146.7 117 65.0
COL.COLO4_14760 Corchorus olitorius HOM05D006045 ORTHO05D007678 6.6e-33 145.6 301 36.9
Phvul.008G118100 Phaseolus vulgaris HOM05D006045 ORTHO05D007678 6.1e-31 139.0 193 43.0
Pp3c17_13640 Physcomitrium patens HOM05D006045 ORTHO05D007678 8.9e-30 135.2 297 33.0
Mapoly0002s0152 Marchantia polymorpha HOM05D006045 ORTHO05D007678 5.7e-29 132.5 338 32.2
PSO339G4427 Papaver somniferum HOM05D006045 ORTHO05D007678 7.0e-27 125.6 162 46.9
Hma1.2p1_0028F.1_g017940 Hydrangea macrophylla HOM05D006045 ORTHO05D007678 1.4e-22 111.3 99 58.6
Atru.chr8.2013 Acer truncatum HOM05D006045 ORTHO05D007678 2.2e-20 104.0 95 57.9
CBR_g8766 Chara braunii HOM05D006045 ORTHO05D007678 1.1e-19 101.7 241 31.5
PSO063G1044 Papaver somniferum HOM05D006045 ORTHO05D007678 2.5e-16 90.5 122 44.3
Medtr7g062690 Medicago truncatula HOM05D006045 ORTHO05D007678 4.7e-07 59.7 77 46.8
Zm00001eb351230 Zea mays HOM05D006045 ORTHO05D007678 1.4e-06 58.2 150 33.3
TPR.G40448 Trifolium pratense HOM05D006045 ORTHO05D007678 1.8e-06 57.8 59 52.5
unitig_21.g21014 Utricularia gibba HOM05D006045 ORTHO05D007678 3.1e-06 57.0 70 45.7


User provided reference genes

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