Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc21g0004900 Simmondsia chinensis HOM05D000782 ORTHO05D000571 1.7e-99 365.9 180 100.0
AUR62036230 Chenopodium quinoa HOM05D006271 ORTHO05D008237 4.4e-34 148.7 150 52.7
AUR62009715 Chenopodium quinoa HOM05D000782 ORTHO05D000571 1.1e-32 144.1 153 52.3
Ah.08g215420 Amaranthus hybridus HOM05D000782 ORTHO05D000571 1.8e-32 143.3 156 49.4
EL10Ac7g15871 Beta vulgaris HOM05D000782 ORTHO05D000571 9.1e-32 141.0 150 52.7
Duzib168G2101 Durio zibethinus HOM05D000782 ORTHO05D000571 1.4e-24 117.1 143 42.7
Actinidia32599 Actinidia chinensis HOM05D000782 ORTHO05D000571 5.4e-24 115.2 138 46.4
Dinv12248 Davidia involucrata HOM05D000782 ORTHO05D000571 3.5e-23 112.5 140 43.6
Rhsim13G0062600 Rhododendron simsii HOM05D000782 ORTHO05D000571 4.5e-23 112.1 141 48.2
Gohir.A08G203700 Gossypium hirsutum HOM05D000782 ORTHO05D000571 5.9e-23 111.7 139 41.7
Atru.chr1.2094 Acer truncatum HOM05D000782 ORTHO05D000571 1.0e-22 110.9 168 40.5
Gohir.A03G024700 Gossypium hirsutum HOM05D000782 ORTHO05D000571 2.9e-22 109.4 147 38.8
Gohir.D03G143800 Gossypium hirsutum HOM05D000782 ORTHO05D000571 3.8e-22 109.0 147 38.8
TAR623G1242 Trochodendron aralioides HOM05D000782 ORTHO05D000571 3.8e-22 109.0 160 38.8
Actinidia23186 Actinidia chinensis HOM05D006271 ORTHO05D008237 5.0e-22 108.6 139 43.9
Thecc.09G359700 Theobroma cacao HOM05D000782 ORTHO05D000571 5.0e-22 108.6 137 40.9
GSVIVG01024611001 Vitis vinifera HOM05D000001 ORTHO05D012572 5.0e-22 108.6 136 43.4
Gohir.D08G221000 Gossypium hirsutum HOM05D000782 ORTHO05D000571 6.6e-22 108.2 138 40.6
Gorai.003G151100 Gossypium raimondii HOM05D000782 ORTHO05D000571 6.6e-22 108.2 147 38.8
Gorai.004G234700 Gossypium raimondii HOM05D000782 ORTHO05D000571 6.6e-22 108.2 138 40.6
TAR623G0287 Trochodendron aralioides HOM05D000782 ORTHO05D000571 8.6e-22 107.8 141 39.7
vmacro02905 Vaccinium macrocarpon HOM05D000782 ORTHO05D000571 1.5e-21 107.1 138 44.2
Hma1.2p1_1421F.1_g282460 Hydrangea macrophylla HOM05D000782 ORTHO05D000571 1.9e-21 106.7 137 42.3
CSS0014731 Camellia sinensis var. sinensis HOM05D001072 ORTHO05D006807 3.3e-21 105.9 137 43.1
COL.COLO4_11173 Corchorus olitorius HOM05D000782 ORTHO05D000571 9.5e-21 104.4 147 40.8
Lsat_1_v5_gn_8_108720 Lactuca sativa HOM05D000782 ORTHO05D000571 1.2e-20 104.0 139 40.3
Lj2A1095G46 Lonicera japonica HOM05D000782 ORTHO05D000571 1.6e-20 103.6 138 44.9
Phvul.008G250800 Phaseolus vulgaris HOM05D000782 ORTHO05D000571 2.1e-20 103.2 141 40.4
Glyma.14G200600 Glycine max HOM05D000782 ORTHO05D000571 4.7e-20 102.1 141 39.7
VMungo0647G1733 Vigna mungo HOM05D000782 ORTHO05D000571 4.7e-20 102.1 141 39.7
QL01p025713 Quercus lobata HOM05D000782 ORTHO05D000571 1.4e-19 100.5 140 38.6
TAR369G0987 Trochodendron aralioides HOM05D000782 ORTHO05D000571 1.8e-19 100.1 155 35.5
Sabra19G0130500 Salix brachista HOM05D000782 ORTHO05D000571 2.3e-19 99.8 147 38.8
QL04p095962 Quercus lobata HOM05D000782 ORTHO05D000571 4.0e-19 99.0 137 37.2
Ciclev10002580m.g Citrus clementina HOM05D000782 ORTHO05D000571 5.2e-19 98.6 145 38.6
DCAR_023953 Daucus carota HOM05D000782 ORTHO05D000571 5.2e-19 98.6 141 38.3
Cc01_g15010 Coffea canephora HOM05D000782 ORTHO05D000571 6.8e-19 98.2 147 39.5
Medtr5g074550 Medicago truncatula HOM05D000782 ORTHO05D000571 6.8e-19 98.2 143 38.5
Migut.N00751 Erythranthe guttata HOM05D000782 ORTHO05D000571 4.4e-18 95.5 136 39.0
QL04p095983 Quercus lobata HOM05D000782 ORTHO05D000571 4.4e-18 95.5 137 36.5
Oeu050028.1 Olea europaea HOM05D000782 ORTHO05D000571 9.8e-18 94.4 139 38.1
Sopen06g033770 Solanum pennellii HOM05D000782 ORTHO05D000571 9.8e-18 94.4 139 38.8
TPR.G25342 Trifolium pratense HOM05D000782 ORTHO05D000571 9.8e-18 94.4 141 38.3
Psat0s2794g0120 Pisum sativum HOM05D000782 ORTHO05D000571 1.3e-17 94.0 138 37.7
Glyma.02G233000 Glycine max HOM05D000782 ORTHO05D000571 1.7e-17 93.6 141 38.3
Eucgr.K01367 Eucalyptus grandis HOM05D000782 ORTHO05D000571 2.2e-17 93.2 144 38.9
Solyc06g082380.3 Solanum lycopersicum HOM05D000782 ORTHO05D000571 2.9e-17 92.8 139 38.1
HanXRQChr11g0339921 Helianthus annuus HOM05D000782 ORTHO05D000571 6.4e-17 91.7 140 37.9
Manes.18G126600 Manihot esculenta HOM05D000782 ORTHO05D000571 6.4e-17 91.7 149 40.3
Cpa.g.sc2.336 Carica papaya HOM05D000782 ORTHO05D000571 8.3e-17 91.3 141 35.5
Sed0021709 Sechium edule HOM05D000782 ORTHO05D000571 1.1e-16 90.9 139 36.0
PGSC0003DMG400030460 Solanum tuberosum HOM05D000782 ORTHO05D000571 1.1e-16 90.9 140 37.9
ECA236G0449 Erigeron canadensis HOM05D000782 ORTHO05D000571 1.4e-16 90.5 116 42.2
Haze_24431 Corylus avellana HOM05D000782 ORTHO05D000571 2.4e-16 89.7 139 35.3
Prupe.6G045600 Prunus persica HOM05D000782 ORTHO05D000571 2.4e-16 89.7 155 34.8
MD11G1060400 Malus domestica HOM05D000782 ORTHO05D000571 4.1e-16 89.0 152 34.9
CsaV3_7G022830 Cucumis sativus L. HOM05D000782 ORTHO05D000571 5.4e-16 88.6 137 37.2
Ca_05681_v3 Cicer arietinum L. HOM05D000782 ORTHO05D000571 1.6e-15 87.0 148 33.8
MELO3C024977.2 Cucumis melo HOM05D000782 ORTHO05D000571 1.6e-15 87.0 146 35.6
Sabra19G0124100 Salix brachista HOM05D000782 ORTHO05D000571 1.6e-15 87.0 172 32.6
SalBow2G3499 Salvia bowleyana HOM05D000782 ORTHO05D000571 1.6e-15 87.0 139 38.1
CAN.G1095.28 Capsicum annuum HOM05D000782 ORTHO05D000571 2.0e-15 86.7 137 37.2
ClCG08G003160 Citrullus lanatus HOM05D000782 ORTHO05D000571 4.6e-15 85.5 137 35.0
MD03G1058200 Malus domestica HOM05D000782 ORTHO05D000571 7.8e-15 84.7 152 34.2
A03p16910 Brassica napus HOM05D000782 ORTHO05D000571 1.0e-14 84.3 142 34.5
BraA03t10980Z Brassica rapa HOM05D000782 ORTHO05D000571 1.0e-14 84.3 142 34.5
LjContig00141g0026997 Lotus japonicus HOM05D000782 ORTHO05D000571 1.0e-14 84.3 138 34.1
FAN21G0593 Fragaria x ananassa HOM05D000782 ORTHO05D000571 1.3e-14 84.0 139 35.3
Aqoxy4G02166 Aquilegia oxysepala HOM05D000782 ORTHO05D000571 3.0e-14 82.8 151 38.4
BcaC01g06019 Brassica carinata HOM05D000782 ORTHO05D000571 3.9e-14 82.4 142 33.8
C03p19910 Brassica napus HOM05D000782 ORTHO05D000571 3.9e-14 82.4 142 34.5
BolC3t14370H Brassica oleracea HOM05D000782 ORTHO05D000571 3.9e-14 82.4 142 34.5
CANSAT54G1735 Cannabis sativa HOM05D000782 ORTHO05D000571 6.6e-14 81.6 91 41.8
Medtr5g074560 Medicago truncatula HOM05D000782 ORTHO05D000571 6.6e-14 81.6 138 34.8
TWI79G1409 Tripterygium wilfordii HOM05D000782 ORTHO05D000571 6.6e-14 81.6 154 31.2
FAN25G1963 Fragaria x ananassa HOM05D000001 ORTHO05D012572 8.6e-14 81.3 139 34.5
MBI15_g20019_MAGBIO Magnolia biondii HOM05D000782 ORTHO05D000571 8.6e-14 81.3 117 37.6
MD17G1185800 Malus domestica HOM05D000782 ORTHO05D000571 1.1e-13 80.9 138 36.2
RcHm_v2.0_Chr5g0071971 Rosa chinensis HOM05D000782 ORTHO05D000571 1.5e-13 80.5 138 36.2
THA.LOC104800764 Tarenaya hassleriana HOM05D000782 ORTHO05D000571 7.3e-13 78.2 153 30.7
ClCG03G000180 Citrullus lanatus HOM05D000782 ORTHO05D000571 1.6e-12 77.0 188 27.1
Thhalv10017277m.g Eutrema salsugineum HOM05D000782 ORTHO05D000571 1.6e-12 77.0 96 42.7
CiPaw.14G053200 Carya illinoinensis HOM05D000782 ORTHO05D000571 2.8e-12 76.3 135 34.1
Aa31LG5G6450 Aethionema arabicum HOM05D002411 ORTHO05D002564 3.6e-12 75.9 153 32.0
Nn2g11061 Nelumbo nucifera HOM05D000782 ORTHO05D000571 1.4e-11 73.9 145 35.2
Sp4g12850 Schrenkiella parvula HOM05D000782 ORTHO05D000571 1.8e-11 73.6 142 32.4
unitig_22.g5204 Utricularia gibba HOM05D006159 ORTHO05D007624 3.1e-11 72.8 116 34.5
CARHR123590 Cardamine hirsuta HOM05D000782 ORTHO05D000571 5.2e-11 72.0 142 31.7
SGA_v2.0_scaffold120G32965 Striga asiatica HOM05D000782 ORTHO05D000571 5.2e-11 72.0 197 27.9
Potri.019G126300 Populus trichocarpa HOM05D000782 ORTHO05D000571 1.2e-10 70.9 142 32.4
PSO170G6702 Papaver somniferum HOM05D000782 ORTHO05D000571 2.0e-10 70.1 144 31.9
AL4G25120 Arabidopsis lyrata HOM05D000782 ORTHO05D000571 7.5e-10 68.2 136 32.4
MSTRG.12694 Avicennia marina HOM05D000782 ORTHO05D000571 1.3e-09 67.4 159 32.7
Carub.0004s1143 Capsella rubella HOM05D000782 ORTHO05D000571 1.3e-09 67.4 142 31.0
HPP92_001136 Vanilla planifolia HOM05D000782 ORTHO05D000571 3.7e-09 65.9 138 32.6
Nitab4.5_0003270g0030 Nicotiana tabacum HOM05D000782 ORTHO05D000571 4.9e-09 65.5 111 35.1
TAR623G0969 Trochodendron aralioides HOM05D000782 ORTHO05D000571 8.3e-09 64.7 70 44.3
AT2G30270 Arabidopsis thaliana HOM05D000782 ORTHO05D000571 2.4e-08 63.2 142 29.6
SalBow6G0271 Salvia bowleyana HOM05D004269 ORTHO05D000571 7.0e-08 61.6 69 44.9
arahy.Tifrunner.gnm1.ann1.NRMQ9K Arachis hypogaea HOM05D000782 ORTHO05D000571 2.0e-07 60.1 151 28.5


User provided reference genes

Program Settings