Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc19g0004030 Simmondsia chinensis HOM05D004187 ORTHO05D004890 1.9e-92 342.4 167 100.0
AUR62001090 Chenopodium quinoa HOM05D004187 ORTHO05D004890 4.3e-52 208.4 166 59.6
Prupe.1G018500 Prunus persica HOM05D004187 ORTHO05D004890 4.3e-52 208.4 168 60.1
Rhsim04G0199500 Rhododendron simsii HOM05D004187 ORTHO05D004890 3.1e-50 202.2 166 56.6
TAR362G0393 Trochodendron aralioides HOM05D004187 ORTHO05D004890 5.3e-50 201.4 169 56.8
FvH4_4g00760 Fragaria vesca HOM05D004187 ORTHO05D004890 9.0e-50 200.7 168 58.3
FAN12G2319 Fragaria x ananassa HOM05D004187 ORTHO05D004890 9.0e-50 200.7 168 58.3
AUR62008916 Chenopodium quinoa HOM05D004187 ORTHO05D004890 1.2e-49 200.3 166 57.8
FAN22G0369 Fragaria x ananassa HOM05D004187 ORTHO05D004890 2.0e-49 199.5 168 58.3
Potri.008G155800 Populus trichocarpa HOM05D004187 ORTHO05D004890 2.0e-49 199.5 166 57.2
RcHm_v2.0_Chr4g0407591 Rosa chinensis HOM05D004187 ORTHO05D004890 4.5e-49 198.4 168 57.7
MBI11_g32998_MAGBIO Magnolia biondii HOM05D002650 ORTHO05D002924 5.8e-49 198.0 162 56.2
Actinidia40129 Actinidia chinensis HOM05D004187 ORTHO05D004890 7.6e-49 197.6 165 56.4
FvH4_5g32450 Fragaria vesca HOM05D004187 ORTHO05D004890 1.0e-48 197.2 168 57.1
FAN18G3642 Fragaria x ananassa HOM05D004187 ORTHO05D004890 1.0e-48 197.2 168 57.1
MD16G1197500 Malus domestica HOM05D004187 ORTHO05D004890 1.0e-48 197.2 168 57.1
Nn1g02390 Nelumbo nucifera HOM05D004187 ORTHO05D004890 4.9e-48 194.9 165 54.5
Sed0024336 Sechium edule HOM05D004187 ORTHO05D004890 6.5e-48 194.5 167 56.9
MELO3C006513.2 Cucumis melo HOM05D004187 ORTHO05D004890 8.4e-48 194.1 168 57.1
CsaV3_3G013040 Cucumis sativus L. HOM05D004187 ORTHO05D004890 8.4e-48 194.1 168 56.5
Dinv25939 Davidia involucrata HOM05D004187 ORTHO05D004890 8.4e-48 194.1 125 68.8
FAN13G2545 Fragaria x ananassa HOM05D004187 ORTHO05D004890 8.4e-48 194.1 168 56.0
Aqoxy2G03437 Aquilegia oxysepala HOM05D004187 ORTHO05D004890 1.1e-47 193.7 168 54.8
Ciclev10005993m.g Citrus clementina HOM05D004187 ORTHO05D004890 1.1e-47 193.7 158 59.5
Gohir.A10G118400 Gossypium hirsutum HOM05D004187 ORTHO05D004890 1.1e-47 193.7 173 54.9
Manes.15G031200 Manihot esculenta HOM05D004187 ORTHO05D004890 1.1e-47 193.7 166 55.4
ClCG05G004990 Citrullus lanatus HOM05D004187 ORTHO05D004890 3.2e-47 192.2 168 56.5
Nitab4.5_0000050g0260 Nicotiana tabacum HOM05D004187 ORTHO05D004890 3.2e-47 192.2 159 56.0
Duzib212G0360 Durio zibethinus HOM05D004187 ORTHO05D004890 7.1e-47 191.0 138 65.2
Thecc.04G235800 Theobroma cacao HOM05D002650 ORTHO05D002924 7.1e-47 191.0 170 55.3
Gorai.011G165600 Gossypium raimondii HOM05D004187 ORTHO05D004890 9.3e-47 190.7 173 53.8
Gohir.D10G148300 Gossypium hirsutum HOM05D004187 ORTHO05D004890 1.2e-46 190.3 173 54.9
THA.LOC104803042 Tarenaya hassleriana HOM05D004187 ORTHO05D004890 3.5e-46 188.7 167 54.5
VMungo0251G0090 Vigna mungo HOM05D004187 ORTHO05D004890 3.5e-46 188.7 125 66.4
Cfa008463 Carpinus fangiana HOM05D004187 ORTHO05D004890 6.0e-46 188.0 189 51.9
QL06p001566 Quercus lobata HOM05D004187 ORTHO05D004890 6.0e-46 188.0 172 53.5
TWI73G1209 Tripterygium wilfordii HOM05D004187 ORTHO05D004890 6.0e-46 188.0 174 53.4
Hma1.2p1_0207F.1_g088010 Hydrangea macrophylla HOM05D004187 ORTHO05D004890 7.9e-46 187.6 162 54.9
Sed0012407 Sechium edule HOM05D004187 ORTHO05D004890 1.0e-45 187.2 168 56.5
Lj3A731T58 Lonicera japonica HOM05D004187 ORTHO05D004890 1.8e-45 186.4 158 57.0
Phvul.002G043400 Phaseolus vulgaris HOM05D004187 ORTHO05D004890 1.8e-45 186.4 125 66.4
Ca_24413_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 2.3e-45 186.0 125 66.4
Rhsim02G0027200 Rhododendron simsii HOM05D004187 ORTHO05D004890 2.3e-45 186.0 167 56.9
Haze_11210 Corylus avellana HOM05D004187 ORTHO05D004890 3.0e-45 185.7 189 51.3
vmacro15360 Vaccinium macrocarpon HOM05D004187 ORTHO05D004890 3.0e-45 185.7 163 57.7
GSVIVG01018017001 Vitis vinifera HOM05D004187 ORTHO05D004890 5.1e-45 184.9 169 55.6
Sopen10g014270 Solanum pennellii HOM05D004187 ORTHO05D004890 8.7e-45 184.1 159 54.7
CSS0045006 Camellia sinensis var. sinensis HOM05D004187 ORTHO05D004890 1.1e-44 183.7 126 65.1
Manes.03G175300 Manihot esculenta HOM05D004187 ORTHO05D004890 1.1e-44 183.7 167 52.1
CSS0034976 Camellia sinensis var. sinensis HOM05D004187 ORTHO05D004890 2.5e-44 182.6 145 59.3
Medtr5g006610 Medicago truncatula HOM05D004187 ORTHO05D004890 2.5e-44 182.6 160 56.9
AL3G36980 Arabidopsis lyrata HOM05D004187 ORTHO05D004890 4.3e-44 181.8 122 63.1
CANSAT78G1519 Cannabis sativa HOM05D004187 ORTHO05D004890 4.3e-44 181.8 162 52.5
Glyma.01G235900 Glycine max HOM05D004187 ORTHO05D004890 4.3e-44 181.8 158 53.8
Sabra08G0118600 Salix brachista HOM05D004187 ORTHO05D004890 5.7e-44 181.4 166 53.0
PGSC0003DMG401028774 Solanum tuberosum HOM05D004187 ORTHO05D004890 1.3e-43 180.3 160 53.1
Eucgr.H03428 Eucalyptus grandis HOM05D004187 ORTHO05D004890 1.6e-43 179.9 167 54.5
Carub.0003s2284 Capsella rubella HOM05D004187 ORTHO05D004890 2.2e-43 179.5 148 56.1
AT3G22680 Arabidopsis thaliana HOM05D004187 ORTHO05D004890 2.8e-43 179.1 122 62.3
TAR633G0827 Trochodendron aralioides HOM05D004187 ORTHO05D004890 2.8e-43 179.1 123 64.2
arahy.Tifrunner.gnm1.ann1.Q4QH0F Arachis hypogaea HOM05D004187 ORTHO05D004890 3.7e-43 178.7 147 57.1
Lalb_Chr05g0211101 Lupinus albus HOM05D004187 ORTHO05D004890 3.7e-43 178.7 150 55.3
arahy.Tifrunner.gnm1.ann1.Q6C7EF Arachis hypogaea HOM05D004187 ORTHO05D004890 6.3e-43 177.9 122 64.8
TWI53G1349 Tripterygium wilfordii HOM05D004187 ORTHO05D004890 6.3e-43 177.9 178 50.0
arahy.Tifrunner.gnm1.ann1.8FXP11 Arachis hypogaea HOM05D004187 ORTHO05D004890 1.4e-42 176.8 149 57.0
arahy.Tifrunner.gnm1.ann1.LSRC2Y Arachis hypogaea HOM05D004187 ORTHO05D004890 1.4e-42 176.8 147 56.5
CiPaw.02G122700 Carya illinoinensis HOM05D004187 ORTHO05D004890 1.4e-42 176.8 192 47.4
FAN08G0419 Fragaria x ananassa HOM05D004187 ORTHO05D004890 1.4e-42 176.8 120 63.3
Psat2g190440 Pisum sativum HOM05D004187 ORTHO05D004890 1.8e-42 176.4 120 65.0
CARHR098560 Cardamine hirsuta HOM05D004187 ORTHO05D004890 3.1e-42 175.6 166 53.0
Peaxi162Scf00245g00106 Petunia axillaris HOM05D004187 ORTHO05D004890 4.1e-42 175.3 150 53.3
THA.LOC104808564 Tarenaya hassleriana HOM05D004187 ORTHO05D004890 4.1e-42 175.3 162 53.1
Nitab4.5_0001547g0030 Nicotiana tabacum HOM05D004187 ORTHO05D004890 5.3e-42 174.9 159 54.1
Nitab4.5_0001792g0010 Nicotiana tabacum HOM05D004187 ORTHO05D004890 5.3e-42 174.9 114 64.9
MSTRG.4047 Avicennia marina HOM05D004187 ORTHO05D004890 1.2e-41 173.7 165 53.9
Nitab4.5_0000085g0360 Nicotiana tabacum HOM05D004187 ORTHO05D004890 1.2e-41 173.7 159 53.5
Medtr5g006600 Medicago truncatula HOM05D004187 ORTHO05D004890 1.5e-41 173.3 125 60.8
TPR.G37887 Trifolium pratense HOM05D004187 ORTHO05D004890 1.5e-41 173.3 125 60.0
TPR.G37866 Trifolium pratense HOM05D004187 ORTHO05D004890 2.0e-41 172.9 125 61.6
LjContig00408g0013113 Lotus japonicus HOM05D004187 ORTHO05D004890 2.6e-41 172.6 133 60.2
SalBow2G2347 Salvia bowleyana HOM05D004187 ORTHO05D004890 1.0e-40 170.6 158 51.3
Ca_24412_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 1.3e-40 170.2 125 59.2
Ca_30960_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 1.3e-40 170.2 125 59.2
A03p42920 Brassica napus HOM05D004187 ORTHO05D004890 1.7e-40 169.9 162 52.5
BraA03t13436Z Brassica rapa HOM05D004187 ORTHO05D004890 1.7e-40 169.9 162 52.5
PSO210G5857 Papaver somniferum HOM05D004187 ORTHO05D004890 1.7e-40 169.9 168 47.6
Aa31LG3G2350 Aethionema arabicum HOM05D004187 ORTHO05D004890 2.2e-40 169.5 126 61.1
SalBow2G0844 Salvia bowleyana HOM05D004187 ORTHO05D004890 2.2e-40 169.5 158 50.0
Thhalv10021679m.g Eutrema salsugineum HOM05D004187 ORTHO05D004890 2.9e-40 169.1 122 59.0
PSO170G4884 Papaver somniferum HOM05D004187 ORTHO05D004890 2.9e-40 169.1 168 47.6
HPP92_009615 Vanilla planifolia HOM05D004187 ORTHO05D004890 2.9e-40 169.1 153 54.2
Psat2g190480 Pisum sativum HOM05D004187 ORTHO05D004890 3.8e-40 168.7 125 60.0
COL.COLO4_21526 Corchorus olitorius HOM05D004187 ORTHO05D004890 5.0e-40 168.3 113 66.4
BcaC01g03429 Brassica carinata HOM05D004187 ORTHO05D004890 6.5e-40 167.9 162 51.9
BcaC01g03430 Brassica carinata HOM05D004187 ORTHO05D004890 6.5e-40 167.9 162 51.9
C03p52670 Brassica napus HOM05D004187 ORTHO05D004890 6.5e-40 167.9 162 51.9
BolC3t17535H Brassica oleracea HOM05D004187 ORTHO05D004890 6.5e-40 167.9 162 51.9
Atru.chr4.2417 Acer truncatum HOM05D004187 ORTHO05D004890 2.5e-39 166.0 159 50.9
CDE07G0031 Ceratophyllum demersum HOM05D004187 ORTHO05D004890 2.5e-39 166.0 154 49.4
DCAR_031726 Daucus carota HOM05D004187 ORTHO05D004890 2.5e-39 166.0 154 51.3
Atru.chr4.2392 Acer truncatum HOM05D004187 ORTHO05D004890 3.2e-39 165.6 159 50.9
Glyma.11G007300 Glycine max HOM05D004187 ORTHO05D004890 3.2e-39 165.6 114 61.4
Peaxi162Scf00092g00016 Petunia axillaris HOM05D004187 ORTHO05D004890 5.5e-39 164.9 120 59.2
Sp3g20440 Schrenkiella parvula HOM05D004187 ORTHO05D004890 5.5e-39 164.9 123 58.5
BraA05t21487Z Brassica rapa HOM05D004187 ORTHO05D004890 9.3e-39 164.1 163 51.5
ECA247G1582 Erigeron canadensis HOM05D004187 ORTHO05D004890 1.2e-38 163.7 164 48.2
Rhsim03G0003800 Rhododendron simsii HOM05D004187 ORTHO05D004890 1.2e-38 163.7 125 54.4
BcaB06g26379 Brassica carinata HOM05D004187 ORTHO05D004890 1.6e-38 163.3 163 50.3
BcaC05g28028 Brassica carinata HOM05D004187 ORTHO05D004890 1.6e-38 163.3 157 52.2
C05p40440 Brassica napus HOM05D004187 ORTHO05D004890 1.6e-38 163.3 157 52.2
BolC5t32785H Brassica oleracea HOM05D004187 ORTHO05D004890 1.6e-38 163.3 157 52.2
Solyc10g045190.3 Solanum lycopersicum HOM05D004187 ORTHO05D004890 1.6e-38 163.3 114 62.3
AUR62001087 Chenopodium quinoa HOM05D004187 ORTHO05D004890 2.7e-38 162.5 176 50.6
A05p26020 Brassica napus HOM05D004187 ORTHO05D004890 3.6e-38 162.2 163 50.3
Dinv03045 Davidia involucrata HOM05D004187 ORTHO05D004890 3.6e-38 162.2 124 54.0
Lsat_1_v5_gn_8_21341 Lactuca sativa HOM05D004187 ORTHO05D004890 6.1e-38 161.4 125 56.8
Actinidia32414 Actinidia chinensis HOM05D004187 ORTHO05D004890 7.9e-38 161.0 116 59.5
ECA247G0434 Erigeron canadensis HOM05D000045 ORTHO05D004890 7.9e-38 161.0 124 55.6
CAN.G1402.3 Capsicum annuum HOM05D004187 ORTHO05D004890 1.0e-37 160.6 166 50.6
Migut.G00365 Erythranthe guttata HOM05D004187 ORTHO05D004890 1.8e-37 159.8 165 46.7
PGSC0003DMG402028774 Solanum tuberosum HOM05D004187 ORTHO05D004890 1.8e-37 159.8 114 61.4
ECA233G0410 Erigeron canadensis HOM05D004187 ORTHO05D004890 2.3e-37 159.5 164 47.6
HanXRQChr08g0219391 Helianthus annuus HOM05D004187 ORTHO05D004890 3.0e-37 159.1 162 50.0
ATR0665G390 Amborella trichopoda HOM05D004187 ORTHO05D004890 3.9e-37 158.7 163 47.2
PGR129G0008 Punica granatum HOM05D004187 ORTHO05D004890 5.1e-37 158.3 165 49.1
PGR142G1722 Punica granatum HOM05D004187 ORTHO05D004890 5.1e-37 158.3 165 49.1
Solyc09g082480.2 Solanum lycopersicum HOM05D004187 ORTHO05D004890 5.1e-37 158.3 122 59.0
Cc10_g08560 Coffea canephora HOM05D004187 ORTHO05D004890 6.7e-37 157.9 158 50.0
SGA_v2.0_scaffold191G40487 Striga asiatica HOM05D004187 ORTHO05D004890 4.3e-36 155.2 131 54.2
Thhalv10017318m.g Eutrema salsugineum HOM05D004187 ORTHO05D004890 7.4e-36 154.5 121 55.4
Sopen09g031340 Solanum pennellii HOM05D004187 ORTHO05D004890 2.2e-35 152.9 122 57.4
PGSC0003DMG400039476 Solanum tuberosum HOM05D004187 ORTHO05D004890 1.8e-34 149.8 114 55.3
Thhalv10029384m.g Eutrema salsugineum HOM05D004187 ORTHO05D004890 7.7e-33 144.4 120 54.2
unitig_22.g6822 Utricularia gibba HOM05D004187 ORTHO05D004890 3.8e-32 142.1 160 43.1
QL08p059729 Quercus lobata HOM05D004187 ORTHO05D004890 1.9e-31 139.8 135 44.4
Cfa001472 Carpinus fangiana HOM05D004187 ORTHO05D004890 4.2e-31 138.7 125 49.6
Potri.008G076500 Populus trichocarpa HOM05D004187 ORTHO05D004890 4.2e-31 138.7 119 54.6
Haze_17068 Corylus avellana HOM05D004187 ORTHO05D004890 5.5e-31 138.3 132 48.5
PGSC0003DMG400040737 Solanum tuberosum HOM05D004187 ORTHO05D004890 7.2e-31 137.9 109 53.2
Prupe.2G235500 Prunus persica HOM05D004187 ORTHO05D004890 2.7e-30 136.0 122 45.9
Sopen09g031300 Solanum pennellii HOM05D004187 ORTHO05D004890 6.1e-30 134.8 114 55.3
COL.COLO4_15044 Corchorus olitorius HOM05D004187 ORTHO05D004890 6.7e-29 131.3 123 50.4
PGSC0003DMG400039782 Solanum tuberosum HOM05D004187 ORTHO05D004890 1.1e-28 130.6 103 52.4
Sopen09g031290 Solanum pennellii HOM05D004187 ORTHO05D004890 7.4e-28 127.9 97 58.8
RcHm_v2.0_Chr1g0367131 Rosa chinensis HOM05D004187 ORTHO05D004890 2.8e-27 125.9 121 47.9
Atru.chr1.2916 Acer truncatum HOM05D004187 ORTHO05D004890 6.9e-26 121.3 112 46.4
Duzib114G0324 Durio zibethinus HOM05D004187 ORTHO05D004890 7.7e-25 117.9 112 48.2
Solyc09g082420.1 Solanum lycopersicum HOM05D004187 ORTHO05D004890 1.7e-24 116.7 89 59.6
Solyc09g082430.1 Solanum lycopersicum HOM05D004187 ORTHO05D004890 2.9e-24 115.9 96 57.3
Atru.chr7.913 Acer truncatum HOM05D004187 ORTHO05D004890 4.2e-23 112.1 111 43.2
Nn6g35138 Nelumbo nucifera HOM05D004187 ORTHO05D004890 4.2e-23 112.1 110 49.1
Lalb_Chr10g0091621 Lupinus albus HOM05D004187 ORTHO05D004890 9.4e-23 110.9 118 43.2
Phvul.008G010500 Phaseolus vulgaris HOM05D004187 ORTHO05D004890 1.2e-22 110.5 120 48.3
Manes.12G002301 Manihot esculenta HOM05D004187 ORTHO05D004890 1.6e-22 110.2 109 46.8
PGSC0003DMG400032269 Solanum tuberosum HOM05D004187 ORTHO05D004890 1.6e-22 110.2 84 57.1
Ca_12246_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 8.0e-22 107.8 110 47.3
VMungo1383G1788 Vigna mungo HOM05D004187 ORTHO05D004890 8.8e-21 104.4 116 43.1
Atru.chr1.2920 Acer truncatum HOM05D004187 ORTHO05D004890 3.3e-20 102.4 117 41.0
Lj1g0011366 Lotus japonicus HOM05D004187 ORTHO05D004890 1.7e-19 100.1 114 38.6
Lj1g0009372 Lotus japonicus HOM05D004187 ORTHO05D004890 2.8e-19 99.4 114 40.4
Lj1g0019332 Lotus japonicus HOM05D004187 ORTHO05D004890 2.8e-19 99.4 114 40.4
Solyc09g082440.1 Solanum lycopersicum HOM05D004187 ORTHO05D004890 6.3e-19 98.2 76 59.2
PGSC0003DMG400013771 Solanum tuberosum HOM05D004187 ORTHO05D004890 2.0e-17 93.2 77 51.9
Medtr5g006580 Medicago truncatula HOM05D004187 ORTHO05D004890 2.6e-17 92.8 121 43.0
Thecc.10G042200 Theobroma cacao HOM05D009017 ORTHO05D010462 6.5e-16 88.2 133 35.3
PGSC0003DMG400032265 Solanum tuberosum HOM05D004187 ORTHO05D004890 1.6e-14 83.6 68 52.9
Lalb_Chr16g0376451 Lupinus albus HOM05D004187 ORTHO05D004890 1.4e-13 80.5 60 60.0
Sabra10G0059200 Salix brachista HOM05D004187 ORTHO05D004890 2.3e-13 79.7 126 36.5
BcaB03g14654 Brassica carinata HOM05D004187 ORTHO05D004890 4.5e-09 65.5 72 41.7
Gohir.A10G219300 Gossypium hirsutum HOM05D009017 ORTHO05D010462 7.7e-09 64.7 99 38.4
Potri.010G083751 Populus trichocarpa HOM05D004187 ORTHO05D004890 3.2e-07 59.3 42 54.8
Zm00001eb275620 Zea mays HOM05D004187 ORTHO05D004890 5.5e-07 58.5 46 54.3


User provided reference genes

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