Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc19g0001080 Simmondsia chinensis HOM05D006803 ORTHO05D008552 3.2e-79 298.5 167 100.0
ClCG05G008590 Citrullus lanatus HOM05D006803 ORTHO05D008552 8.2e-51 204.1 155 67.1
Hund11694 Selenicereus undatus HOM05D006803 ORTHO05D008552 1.4e-50 203.4 137 72.3
Potri.012G033700 Populus trichocarpa HOM05D006803 ORTHO05D008552 2.6e-49 199.1 174 61.5
Hma1.2p1_0327F.1_g126650 Hydrangea macrophylla HOM05D006803 ORTHO05D008552 3.4e-49 198.7 162 66.0
Nn1g01776 Nelumbo nucifera HOM05D006803 ORTHO05D008552 3.4e-49 198.7 159 64.8
Actinidia34181 Actinidia chinensis HOM05D006803 ORTHO05D008552 7.6e-49 197.6 172 60.5
MD01G1213500 Malus domestica HOM05D006803 ORTHO05D008552 7.6e-49 197.6 162 63.0
TAR333G0006 Trochodendron aralioides HOM05D006803 ORTHO05D008552 7.6e-49 197.6 166 63.9
Aqoxy7G00212 Aquilegia oxysepala HOM05D006803 ORTHO05D008552 1.7e-48 196.4 174 61.5
vmacro06587 Vaccinium macrocarpon HOM05D006803 ORTHO05D008552 2.9e-48 195.7 161 64.0
GSVIVG01028745001 Vitis vinifera HOM05D006803 ORTHO05D008552 3.8e-48 195.3 170 60.6
MELO3C006968.2 Cucumis melo HOM05D006803 ORTHO05D008552 4.9e-48 194.9 138 69.6
PSO135G0887 Papaver somniferum HOM05D006803 ORTHO05D008552 4.9e-48 194.9 166 63.9
CiPaw.05G259100 Carya illinoinensis HOM05D006803 ORTHO05D008552 8.4e-48 194.1 153 66.7
SalBow4G1856 Salvia bowleyana HOM05D006803 ORTHO05D008552 8.4e-48 194.1 171 62.6
SalBow4G1881 Salvia bowleyana HOM05D006803 ORTHO05D008552 8.4e-48 194.1 171 62.6
Ca_19336_v3 Cicer arietinum L. HOM05D006803 ORTHO05D008552 1.1e-47 193.7 169 60.9
Gohir.D08G108400 Gossypium hirsutum HOM05D006803 ORTHO05D008552 1.1e-47 193.7 155 64.5
Gorai.004G116000 Gossypium raimondii HOM05D006803 ORTHO05D008552 1.1e-47 193.7 155 64.5
PSO384G2893 Papaver somniferum HOM05D006803 ORTHO05D008552 1.1e-47 193.7 97 90.7
unitig_37.g11977 Utricularia gibba HOM05D000211 ORTHO05D002285 1.4e-47 193.4 96 88.5
MBI06_g04289_MAGBIO Magnolia biondii HOM05D006803 ORTHO05D008552 2.5e-47 192.6 175 61.7
Manes.14G019756 Manihot esculenta HOM05D006803 ORTHO05D008552 2.5e-47 192.6 96 88.5
Atru.chr1.293 Acer truncatum HOM05D006803 ORTHO05D008552 4.2e-47 191.8 150 63.3
Ciclev10006070m.g Citrus clementina HOM05D006803 ORTHO05D008552 7.1e-47 191.0 174 57.5
Cc02_g02040 Coffea canephora HOM05D006803 ORTHO05D008552 7.1e-47 191.0 96 87.5
Dinv28351 Davidia involucrata HOM05D006803 ORTHO05D008552 7.1e-47 191.0 96 88.5
Rhsim03G0197200 Rhododendron simsii HOM05D006803 ORTHO05D008552 7.1e-47 191.0 156 71.8
Duzib084G0216 Durio zibethinus HOM05D006803 ORTHO05D008552 9.3e-47 190.7 173 59.5
MD07G1283300 Malus domestica HOM05D006803 ORTHO05D008552 9.3e-47 190.7 96 88.5
ATR0721G182 Amborella trichopoda HOM05D006803 ORTHO05D008552 1.6e-46 189.9 164 59.1
Peaxi162Scf00904g00457 Petunia axillaris HOM05D006803 ORTHO05D008552 1.6e-46 189.9 96 86.5
Prupe.2G305500 Prunus persica HOM05D006803 ORTHO05D008552 1.6e-46 189.9 162 62.3
Cpa.g.sc3.33 Carica papaya HOM05D006803 ORTHO05D008552 2.1e-46 189.5 174 58.6
FAN01G0710 Fragaria x ananassa HOM05D006803 ORTHO05D008552 2.1e-46 189.5 96 88.5
FAN06G1048 Fragaria x ananassa HOM05D006803 ORTHO05D008552 2.1e-46 189.5 96 88.5
FAN06G4527 Fragaria x ananassa HOM05D006803 ORTHO05D008552 2.1e-46 189.5 96 88.5
FAN10G2870 Fragaria x ananassa HOM05D006803 ORTHO05D008552 2.1e-46 189.5 96 88.5
Lsat_1_v5_gn_9_57340 Lactuca sativa HOM05D006803 ORTHO05D008552 2.1e-46 189.5 96 86.5
RcHm_v2.0_Chr1g0379821 Rosa chinensis HOM05D006803 ORTHO05D008552 2.1e-46 189.5 96 88.5
EL10Ac3g05364 Beta vulgaris HOM05D006803 ORTHO05D008552 2.7e-46 189.1 166 60.8
CSS0034587 Camellia sinensis var. sinensis HOM05D006803 ORTHO05D008552 2.7e-46 189.1 96 85.4
FAN03G2299 Fragaria x ananassa HOM05D006803 ORTHO05D008552 2.7e-46 189.1 96 87.5
QL09p011586 Quercus lobata HOM05D006803 ORTHO05D008552 2.7e-46 189.1 152 62.5
SGA_v2.0_scaffold44G16771 Striga asiatica HOM05D006803 ORTHO05D008552 2.7e-46 189.1 96 88.5
TPR.G36689 Trifolium pratense HOM05D006803 ORTHO05D008552 2.7e-46 189.1 154 64.3
arahy.Tifrunner.gnm1.ann1.GHK1U8 Arachis hypogaea HOM05D006803 ORTHO05D008552 3.5e-46 188.7 138 67.4
arahy.Tifrunner.gnm1.ann1.V6YLC6 Arachis hypogaea HOM05D006803 ORTHO05D008552 3.5e-46 188.7 138 67.4
CDE04G2534 Ceratophyllum demersum HOM05D006803 ORTHO05D008552 3.5e-46 188.7 96 88.5
Migut.F00254 Erythranthe guttata HOM05D006803 ORTHO05D008552 4.6e-46 188.3 170 59.4
FvH4_7g30800 Fragaria vesca HOM05D006803 ORTHO05D008552 4.6e-46 188.3 96 87.5
Thecc.03G190700 Theobroma cacao HOM05D006803 ORTHO05D008552 4.6e-46 188.3 152 64.5
TWI14G0759 Tripterygium wilfordii HOM05D006803 ORTHO05D008552 4.6e-46 188.3 96 86.5
COL.COLO4_07418 Corchorus olitorius HOM05D006803 ORTHO05D008552 7.9e-46 187.6 169 60.4
Duzib205G0804 Durio zibethinus HOM05D006803 ORTHO05D008552 7.9e-46 187.6 96 87.5
CANSAT21G0672 Cannabis sativa HOM05D006803 ORTHO05D008552 1.3e-45 186.8 96 86.5
Sed0009140 Sechium edule HOM05D006803 ORTHO05D008552 1.3e-45 186.8 96 86.5
Carub.0008s1314 Capsella rubella HOM05D006803 ORTHO05D008552 2.3e-45 186.0 96 86.5
Eucgr.K00316 Eucalyptus grandis HOM05D006803 ORTHO05D008552 2.3e-45 186.0 96 86.5
Glyma.09G125800 Glycine max HOM05D006803 ORTHO05D008552 2.3e-45 186.0 96 87.5
AL8G27460 Arabidopsis lyrata HOM05D006803 ORTHO05D008552 3.0e-45 185.7 96 86.5
HanXRQChr09g0253111 Helianthus annuus HOM05D006803 ORTHO05D008552 3.0e-45 185.7 156 61.5
A10p10450 Brassica napus HOM05D006803 ORTHO05D008552 5.1e-45 184.9 96 85.4
C09p42680 Brassica napus HOM05D006803 ORTHO05D008552 5.1e-45 184.9 96 85.4
BolC9t57144H Brassica oleracea HOM05D006803 ORTHO05D008552 5.1e-45 184.9 96 85.4
BraA10t43128Z Brassica rapa HOM05D006803 ORTHO05D008552 5.1e-45 184.9 96 85.4
DCAR_014527 Daucus carota HOM05D006803 ORTHO05D008552 5.1e-45 184.9 96 82.3
Lj3C914T13 Lonicera japonica HOM05D006803 ORTHO05D008552 5.1e-45 184.9 135 68.9
TWI39G0241 Tripterygium wilfordii HOM05D006803 ORTHO05D008552 5.1e-45 184.9 147 61.9
AT5G52960 Arabidopsis thaliana HOM05D006803 ORTHO05D008552 8.7e-45 184.1 96 84.4
CAN.G108.11 Capsicum annuum HOM05D006803 ORTHO05D008552 8.7e-45 184.1 174 55.7
CDE03G0029 Ceratophyllum demersum HOM05D006803 ORTHO05D008552 8.7e-45 184.1 149 63.1
Gohir.A08G097600 Gossypium hirsutum HOM05D006803 ORTHO05D008552 8.7e-45 184.1 167 58.7
Aa31LG3G9190 Aethionema arabicum HOM05D006803 ORTHO05D008552 1.1e-44 183.7 96 83.3
ECA232G4170 Erigeron canadensis HOM05D006803 ORTHO05D008552 1.1e-44 183.7 167 66.5
Phvul.004G101300 Phaseolus vulgaris HOM05D006803 ORTHO05D008552 1.1e-44 183.7 171 56.1
Potri.016G123100 Populus trichocarpa HOM05D006803 ORTHO05D008552 1.1e-44 183.7 144 63.2
Thhalv10014833m.g Eutrema salsugineum HOM05D006803 ORTHO05D008552 1.9e-44 183.0 96 84.4
Sp6g15120 Schrenkiella parvula HOM05D006803 ORTHO05D008552 1.9e-44 183.0 96 84.4
PGSC0003DMG400009065 Solanum tuberosum HOM05D006803 ORTHO05D008552 1.9e-44 183.0 136 64.0
THA.LOC104825126 Tarenaya hassleriana HOM05D006803 ORTHO05D008552 1.9e-44 183.0 96 84.4
Medtr6g034205 Medicago truncatula HOM05D006803 ORTHO05D008552 2.5e-44 182.6 156 62.2
Psat1g097000 Pisum sativum HOM05D006803 ORTHO05D008552 2.5e-44 182.6 129 65.9
Oeu044167.1 Olea europaea HOM05D006803 ORTHO05D008552 3.3e-44 182.2 172 58.1
PGR142G1334 Punica granatum HOM05D006803 ORTHO05D008552 3.3e-44 182.2 96 84.4
Sed0024434 Sechium edule HOM05D006803 ORTHO05D008552 4.3e-44 181.8 96 84.4
VMungo0464G0281 Vigna mungo HOM05D006803 ORTHO05D008552 5.7e-44 181.4 173 56.1
Lalb_Chr01g0009661 Lupinus albus HOM05D006803 ORTHO05D008552 9.7e-44 180.6 176 54.0
Sopen03g003500 Solanum pennellii HOM05D006803 ORTHO05D008552 9.7e-44 180.6 136 63.2
Solyc03g007540.3 Solanum lycopersicum HOM05D006803 ORTHO05D008552 2.8e-43 179.1 168 54.8
Mapoly0006s0111 Marchantia polymorpha HOM05D006803 ORTHO05D008552 4.8e-43 178.3 96 78.1
Actinidia08612 Actinidia chinensis HOM05D006803 ORTHO05D008552 1.4e-42 176.8 173 56.6
Lj2g0024519 Lotus japonicus HOM05D006803 ORTHO05D008552 1.4e-42 176.8 165 54.5
Sabra15G0018100 Salix brachista HOM05D006803 ORTHO05D008552 3.1e-42 175.6 199 51.3
Glyma.16G172700 Glycine max HOM05D006803 ORTHO05D008552 4.1e-42 175.3 96 80.2
Sabra15G0020600 Salix brachista HOM05D006803 ORTHO05D008552 4.1e-42 175.3 117 70.9
Os05g0569200 Oryza sativa ssp. japonica HOM05D006803 ORTHO05D008552 2.0e-41 172.9 96 79.2
Zm00001eb296320 Zea mays HOM05D006803 ORTHO05D008552 3.4e-41 172.2 96 79.2
SEGI_13941 Sequoiadendron giganteum HOM05D006803 ORTHO05D008552 2.2e-40 169.5 96 79.2
AagrBONN_evm.TU.Sc2ySwM_228.1351 Anthoceros agrestis HOM05D006803 ORTHO05D008552 8.5e-40 167.5 93 79.6
SMO169G0228 Selaginella moellendorffii HOM05D006803 ORTHO05D008552 4.2e-39 165.2 96 75.0
Sabra12G0022800 Salix brachista HOM05D006803 ORTHO05D008552 2.1e-38 162.9 227 43.6
Pp3c4_26620 Physcomitrium patens HOM05D006803 ORTHO05D008552 1.4e-37 160.2 91 78.0
Pp3c26_8430 Physcomitrium patens HOM05D006803 ORTHO05D008552 2.8e-35 152.5 88 77.3
Nitab4.5_0000472g0050 Nicotiana tabacum HOM05D006803 ORTHO05D008552 2.5e-31 139.4 171 50.9
Nitab4.5_0001331g0090 Nicotiana tabacum HOM05D006803 ORTHO05D008552 4.2e-31 138.7 96 69.8
CBR_g9073 Chara braunii HOM05D006803 ORTHO05D008552 7.9e-30 134.4 96 62.5
Haze_00093 Corylus avellana HOM05D006803 ORTHO05D008552 1.4e-29 133.7 133 55.6
CARHR265930 Cardamine hirsuta HOM05D006803 ORTHO05D008552 2.6e-28 129.4 66 84.8
BcaB08g35659 Brassica carinata HOM05D006803 ORTHO05D008552 5.3e-26 121.7 62 83.9
HPP92_011456 Vanilla planifolia HOM05D006803 ORTHO05D008552 5.3e-26 121.7 65 83.1
Eucgr.L03342 Eucalyptus grandis HOM05D006803 ORTHO05D008552 2.9e-24 115.9 61 80.3
Oeu059677.1 Olea europaea HOM05D006803 ORTHO05D008552 7.2e-23 111.3 62 74.2
Oeu008094.1 Olea europaea HOM05D006803 ORTHO05D008552 6.3e-19 98.2 124 43.5
Oeu059693.1 Olea europaea HOM05D006803 ORTHO05D008552 1.7e-16 90.1 124 41.1
Thecc.03G190900 Theobroma cacao HOM05D006803 ORTHO05D008552 5.7e-12 75.1 36 94.4
RcHm_v2.0_Chr1g0379761 Rosa chinensis HOM05D006803 ORTHO05D008552 3.7e-11 72.4 35 94.3


User provided reference genes

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