Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc17g0001700 Simmondsia chinensis HOM05D002211 ORTHO05D002206 3.9e-86 321.6 187 100.0
Ciclev10017076m.g Citrus clementina HOM05D002211 ORTHO05D002206 3.3e-24 115.9 145 49.0
Gohir.A11G142300 Gossypium hirsutum HOM05D002211 ORTHO05D002206 1.6e-23 113.6 146 47.3
Duzib138G0235 Durio zibethinus HOM05D002211 ORTHO05D002206 3.6e-23 112.5 147 46.9
Gorai.007G159300 Gossypium raimondii HOM05D002211 ORTHO05D002206 6.2e-23 111.7 146 46.6
Thecc.01G211400 Theobroma cacao HOM05D002211 ORTHO05D002206 2.3e-22 109.8 147 46.3
Gohir.D11G148600 Gossypium hirsutum HOM05D002211 ORTHO05D002206 6.8e-22 108.2 146 45.9
QL09p046170 Quercus lobata HOM05D002211 ORTHO05D002206 3.4e-21 105.9 161 44.1
CSS0050270 Camellia sinensis var. sinensis HOM05D002211 ORTHO05D002206 4.4e-21 105.5 146 45.9
Haze_23452 Corylus avellana HOM05D002211 ORTHO05D002206 4.4e-21 105.5 146 43.8
Peaxi162Scf01242g00126 Petunia axillaris HOM05D002211 ORTHO05D002206 4.4e-21 105.5 147 46.3
COL.COLO4_38590 Corchorus olitorius HOM05D002211 ORTHO05D002206 5.8e-21 105.1 148 45.3
RcHm_v2.0_Chr6g0282871 Rosa chinensis HOM05D002211 ORTHO05D002206 5.8e-21 105.1 148 46.6
vmacro14694 Vaccinium macrocarpon HOM05D002211 ORTHO05D002206 5.8e-21 105.1 166 46.4
Potri.002G250800 Populus trichocarpa HOM05D002211 ORTHO05D002206 7.5e-21 104.8 149 44.3
CSS0000478 Camellia sinensis var. sinensis HOM05D002211 ORTHO05D002206 9.8e-21 104.4 155 45.2
MD05G1159900 Malus domestica HOM05D002211 ORTHO05D002206 9.8e-21 104.4 146 45.2
Nitab4.5_0011983g0010 Nicotiana tabacum HOM05D002211 ORTHO05D002206 9.8e-21 104.4 147 45.6
Rhsim01G0248800 Rhododendron simsii HOM05D002211 ORTHO05D002206 9.8e-21 104.4 156 45.5
CiPaw.13G055000 Carya illinoinensis HOM05D002211 ORTHO05D002206 1.3e-20 104.0 146 43.8
AUR62008124 Chenopodium quinoa HOM05D002211 ORTHO05D002206 1.3e-20 104.0 157 43.9
Phvul.010G031300 Phaseolus vulgaris HOM05D002211 ORTHO05D002206 1.3e-20 104.0 149 45.6
Actinidia23360 Actinidia chinensis HOM05D002211 ORTHO05D002206 1.7e-20 103.6 169 44.4
Glyma.03G089800 Glycine max HOM05D002211 ORTHO05D002206 2.2e-20 103.2 149 45.6
Peaxi162Scf00335g00107 Petunia axillaris HOM05D002211 ORTHO05D002206 2.2e-20 103.2 157 46.5
DCAR_018626 Daucus carota HOM05D002211 ORTHO05D002206 2.9e-20 102.8 158 43.0
DCAR_012692 Daucus carota HOM05D002211 ORTHO05D002206 3.7e-20 102.4 152 43.4
CANSAT01G1044 Cannabis sativa HOM05D002211 ORTHO05D002206 4.9e-20 102.1 151 43.7
FvH4_2g17840 Fragaria vesca HOM05D002211 ORTHO05D002206 6.4e-20 101.7 148 45.3
Gohir.A07G196800 Gossypium hirsutum HOM05D002211 ORTHO05D002206 6.4e-20 101.7 162 42.6
Dinv28814 Davidia involucrata HOM05D002211 ORTHO05D002206 8.3e-20 101.3 170 44.1
Lj3g0001912 Lotus japonicus HOM05D002211 ORTHO05D002206 8.3e-20 101.3 146 45.2
Glyma.13G008000 Glycine max HOM05D002211 ORTHO05D002206 1.1e-19 100.9 149 45.0
MD10G1152300 Malus domestica HOM05D002211 ORTHO05D002206 1.1e-19 100.9 146 44.5
Medtr8g011470 Medicago truncatula HOM05D002211 ORTHO05D002206 1.1e-19 100.9 147 44.2
TWI36G0467 Tripterygium wilfordii HOM05D002211 ORTHO05D002206 1.1e-19 100.9 154 44.2
MSTRG.17972 Avicennia marina HOM05D002211 ORTHO05D002206 1.4e-19 100.5 156 44.2
Gohir.D07G167000 Gossypium hirsutum HOM05D002211 ORTHO05D002206 1.4e-19 100.5 158 42.4
Prupe.8G190600 Prunus persica HOM05D002211 ORTHO05D002206 1.4e-19 100.5 146 43.8
CiPaw.14G043400 Carya illinoinensis HOM05D002211 ORTHO05D002206 1.9e-19 100.1 155 43.2
FAN24G0249 Fragaria x ananassa HOM05D002211 ORTHO05D002206 1.9e-19 100.1 148 44.6
Gohir.D07G203200 Gossypium hirsutum HOM05D002211 ORTHO05D002206 1.9e-19 100.1 149 42.3
Gorai.001G228600 Gossypium raimondii HOM05D002211 ORTHO05D002206 1.9e-19 100.1 149 43.0
Dinv10434 Davidia involucrata HOM05D002211 ORTHO05D002206 3.2e-19 99.4 153 43.1
FAN27G0804 Fragaria x ananassa HOM05D002211 ORTHO05D002206 3.2e-19 99.4 147 44.2
Gorai.N003500 Gossypium raimondii HOM05D002211 ORTHO05D002206 4.1e-19 99.0 145 41.4
Nitab4.5_0000038g0090 Nicotiana tabacum HOM05D002211 ORTHO05D002206 4.1e-19 99.0 158 43.0
Rhsim13G0052500 Rhododendron simsii HOM05D002211 ORTHO05D002206 4.1e-19 99.0 144 47.2
VMungo0331G1849 Vigna mungo HOM05D002211 ORTHO05D002206 4.1e-19 99.0 147 44.2
Cc01_g16160 Coffea canephora HOM05D002211 ORTHO05D002206 7.1e-19 98.2 158 43.7
FAN15G0122 Fragaria x ananassa HOM05D002211 ORTHO05D002206 7.1e-19 98.2 147 44.9
Migut.N00663 Erythranthe guttata HOM05D002211 ORTHO05D002206 1.6e-18 97.1 162 42.6
Eucgr.H00728 Eucalyptus grandis HOM05D002211 ORTHO05D002206 1.6e-18 97.1 151 41.7
Nitab4.5_0005972g0020 Nicotiana tabacum HOM05D002211 ORTHO05D002206 1.6e-18 97.1 143 45.5
Sopen06g034470 Solanum pennellii HOM05D002211 ORTHO05D002206 2.1e-18 96.7 146 42.5
Glyma.18G152300 Glycine max HOM05D002211 ORTHO05D002206 2.7e-18 96.3 148 43.2
Lsat_1_v5_gn_8_97941 Lactuca sativa HOM05D002211 ORTHO05D002206 2.7e-18 96.3 142 43.0
EL10Ac5g10628 Beta vulgaris HOM05D002211 ORTHO05D002206 3.5e-18 95.9 151 44.4
Nitab4.5_0002463g0070 Nicotiana tabacum HOM05D002211 ORTHO05D002206 3.5e-18 95.9 147 42.9
PGSC0003DMG400020177 Solanum tuberosum HOM05D002211 ORTHO05D002206 3.5e-18 95.9 150 42.7
Atru.chr6.3550 Acer truncatum HOM05D002211 ORTHO05D002206 4.6e-18 95.5 159 40.9
Cpa.g.sc8.75 Carica papaya HOM05D002211 ORTHO05D002206 4.6e-18 95.5 153 44.4
Lalb_Chr01g0022001 Lupinus albus HOM05D002211 ORTHO05D002206 6.0e-18 95.1 148 41.9
Manes.13G054300 Manihot esculenta HOM05D002211 ORTHO05D002206 6.0e-18 95.1 156 41.7
Nitab4.5_0005972g0010 Nicotiana tabacum HOM05D002211 ORTHO05D002206 7.8e-18 94.7 157 40.8
Phvul.008G137200 Phaseolus vulgaris HOM05D002211 ORTHO05D002206 7.8e-18 94.7 147 43.5
Solyc06g083080.3 Solanum lycopersicum HOM05D002211 ORTHO05D002206 7.8e-18 94.7 146 42.5
Psat4g206640 Pisum sativum HOM05D002211 ORTHO05D002206 1.0e-17 94.4 147 42.9
VMungo1383G1511 Vigna mungo HOM05D002211 ORTHO05D002206 1.0e-17 94.4 149 41.6
Lalb_Chr03g0041111 Lupinus albus HOM05D002211 ORTHO05D002206 1.3e-17 94.0 143 42.7
Gohir.A07G159400 Gossypium hirsutum HOM05D002211 ORTHO05D002206 1.7e-17 93.6 145 41.4
Manes.12G053700 Manihot esculenta HOM05D002211 ORTHO05D002206 1.7e-17 93.6 158 42.4
Peaxi162Scf00335g00116 Petunia axillaris HOM05D002211 ORTHO05D002206 2.3e-17 93.2 161 42.2
Nitab4.5_0009151g0010 Nicotiana tabacum HOM05D002211 ORTHO05D002206 3.0e-17 92.8 147 43.5
Sopen09g020090 Solanum pennellii HOM05D002211 ORTHO05D002206 3.0e-17 92.8 158 39.2
PGSC0003DMG400006602 Solanum tuberosum HOM05D002211 ORTHO05D002206 3.0e-17 92.8 158 39.9
CsaV3_7G026890 Cucumis sativus L. HOM05D002211 ORTHO05D002206 5.1e-17 92.0 144 39.6
ECA247G4066 Erigeron canadensis HOM05D002211 ORTHO05D002206 5.1e-17 92.0 169 37.3
HanXRQChr16g0507881 Helianthus annuus HOM05D002211 ORTHO05D002206 5.1e-17 92.0 156 39.7
Ah.02g111170 Amaranthus hybridus HOM05D002211 ORTHO05D002206 1.1e-16 90.9 164 40.2
Hund09466 Selenicereus undatus HOM05D002211 ORTHO05D002206 1.1e-16 90.9 149 43.0
Migut.D00729 Erythranthe guttata HOM05D002211 ORTHO05D002206 1.5e-16 90.5 162 38.3
arahy.Tifrunner.gnm1.ann1.0TX68Y Arachis hypogaea HOM05D002211 ORTHO05D002206 1.9e-16 90.1 148 43.9
arahy.Tifrunner.gnm1.ann1.PCV855 Arachis hypogaea HOM05D002211 ORTHO05D002206 1.9e-16 90.1 148 43.9
ClCG09G008150 Citrullus lanatus HOM05D002211 ORTHO05D002206 1.9e-16 90.1 147 41.5
Lsat_1_v5_gn_9_16221 Lactuca sativa HOM05D002211 ORTHO05D002206 2.5e-16 89.7 174 39.1
PGR083G1506 Punica granatum HOM05D002211 ORTHO05D002206 2.5e-16 89.7 161 40.4
Aa31sc1803G10 Aethionema arabicum HOM05D002211 ORTHO05D002206 3.3e-16 89.4 157 38.9
MSTRG.21304 Avicennia marina HOM05D002211 ORTHO05D002206 3.3e-16 89.4 158 41.1
SGA_v2.0_scaffold566G52949 Striga asiatica HOM05D002211 ORTHO05D002206 5.6e-16 88.6 148 42.6
Actinidia30019 Actinidia chinensis HOM05D002211 ORTHO05D002206 1.2e-15 87.4 156 40.4
Glyma.08G344400 Glycine max HOM05D002211 ORTHO05D002206 1.2e-15 87.4 148 40.5
DCAR_004766 Daucus carota HOM05D006769 ORTHO05D008522 1.6e-15 87.0 161 36.0
unitig_0.g1220 Utricularia gibba HOM05D002211 ORTHO05D002206 1.6e-15 87.0 141 41.1
Oeu003632.1 Olea europaea HOM05D002211 ORTHO05D002206 2.1e-15 86.7 173 37.0
Sabra02G0190700 Salix brachista HOM05D002211 ORTHO05D002206 2.1e-15 86.7 169 36.7
vmacro02814 Vaccinium macrocarpon HOM05D002211 ORTHO05D002206 6.2e-15 85.1 166 39.8
CARHR183520 Cardamine hirsuta HOM05D002211 ORTHO05D002206 8.1e-15 84.7 159 37.1
Nitab4.5_0000038g0110 Nicotiana tabacum HOM05D002211 ORTHO05D002206 8.1e-15 84.7 181 36.5
Sed0022694 Sechium edule HOM05D002211 ORTHO05D002206 8.1e-15 84.7 158 39.2
AL8G21370 Arabidopsis lyrata HOM05D002211 ORTHO05D002206 1.1e-14 84.3 159 39.0
TWI18G0790 Tripterygium wilfordii HOM05D002211 ORTHO05D002206 2.3e-14 83.2 139 41.7
AT5G48500 Arabidopsis thaliana HOM05D002211 ORTHO05D002206 3.1e-14 82.8 159 38.4
THA.LOC104818996 Tarenaya hassleriana HOM05D002211 ORTHO05D002206 3.1e-14 82.8 156 40.4
GSVIVG01006232001 Vitis vinifera HOM05D002211 ORTHO05D002206 4.0e-14 82.4 119 42.9
Ah.11g051060 Amaranthus hybridus HOM05D002435 ORTHO05D002550 5.2e-14 82.0 147 41.5
SGA_v2.0_scaffold77G25293 Striga asiatica HOM05D002211 ORTHO05D002206 5.2e-14 82.0 165 36.4
BraA02t08738Z Brassica rapa HOM05D002211 ORTHO05D002206 8.9e-14 81.3 158 35.4
Peaxi162Scf00335g00096 Petunia axillaris HOM05D002211 ORTHO05D002206 8.9e-14 81.3 120 44.2
BcaC03g17656 Brassica carinata HOM05D002211 ORTHO05D002206 1.2e-13 80.9 159 36.5
C02p56580 Brassica napus HOM05D002211 ORTHO05D002206 1.2e-13 80.9 159 36.5
BolC2t11717H Brassica oleracea HOM05D002211 ORTHO05D002206 1.2e-13 80.9 159 36.5
Lsat_1_v5_gn_5_178360 Lactuca sativa HOM05D002211 ORTHO05D002206 1.2e-13 80.9 150 38.7
Sed0012250 Sechium edule HOM05D002211 ORTHO05D002206 1.5e-13 80.5 144 38.9
TPR.G28988 Trifolium pratense HOM05D002211 ORTHO05D002206 1.5e-13 80.5 125 43.2
HanXRQChr01g0007241 Helianthus annuus HOM05D002211 ORTHO05D002206 2.0e-13 80.1 156 36.5
ECA248G1643 Erigeron canadensis HOM05D002211 ORTHO05D002206 3.4e-13 79.3 143 39.2
Thhalv10005044m.g Eutrema salsugineum HOM05D002211 ORTHO05D002206 3.4e-13 79.3 157 37.6
MSTRG.18492 Avicennia marina HOM05D002211 ORTHO05D002206 7.6e-13 78.2 159 35.2
HanXRQChr08g0231451 Helianthus annuus HOM05D002211 ORTHO05D002206 7.6e-13 78.2 158 37.3
Sp2g18870 Schrenkiella parvula HOM05D002211 ORTHO05D002206 7.6e-13 78.2 158 34.8
A02p37510 Brassica napus HOM05D002211 ORTHO05D002206 9.9e-13 77.8 159 36.5
unitig_0.g413 Utricularia gibba HOM05D002211 ORTHO05D002206 1.7e-12 77.0 118 44.1
BcaC06g30788 Brassica carinata HOM05D002211 ORTHO05D002206 2.9e-12 76.3 159 39.0
Psat3g151120 Pisum sativum HOM05D002211 ORTHO05D002206 2.9e-12 76.3 148 37.2
A09p04550 Brassica napus HOM05D002211 ORTHO05D002206 3.7e-12 75.9 156 34.6
BraA09t36090Z Brassica rapa HOM05D002211 ORTHO05D002206 3.7e-12 75.9 156 34.6
AUR62028703 Chenopodium quinoa HOM05D002211 ORTHO05D002206 3.7e-12 75.9 86 48.8
SalBow6G1551 Salvia bowleyana HOM05D002211 ORTHO05D002206 3.7e-12 75.9 91 49.5
Lalb_Chr07g0194521 Lupinus albus HOM05D002211 ORTHO05D002206 4.9e-12 75.5 147 36.7
BcaB07g30027 Brassica carinata HOM05D002211 ORTHO05D002206 1.9e-11 73.6 157 35.0
Actinidia23790 Actinidia chinensis HOM05D002211 ORTHO05D002206 3.2e-11 72.8 149 36.2
Carub.0008s0808 Capsella rubella HOM05D002211 ORTHO05D002206 3.2e-11 72.8 168 37.5
BcaC06g30792 Brassica carinata HOM05D002211 ORTHO05D002206 1.2e-10 70.9 174 37.4
A06p39140 Brassica napus HOM05D002211 ORTHO05D002206 1.2e-10 70.9 156 37.8
TAR362G0774 Trochodendron aralioides HOM05D002211 ORTHO05D002206 1.2e-10 70.9 169 32.5
BcaC06g30790 Brassica carinata HOM05D002211 ORTHO05D002206 1.6e-10 70.5 155 37.4
BolC7t44440H Brassica oleracea HOM05D002211 ORTHO05D002206 1.6e-10 70.5 155 37.4
Eucgr.K02089 Eucalyptus grandis HOM05D002211 ORTHO05D002206 1.6e-10 70.5 147 34.7
C07p39190 Brassica napus HOM05D002211 ORTHO05D002206 2.7e-10 69.7 155 36.8
Lj1g0027803 Lotus japonicus HOM05D002211 ORTHO05D002206 2.7e-10 69.7 158 37.3
BraA06t26828Z Brassica rapa HOM05D002211 ORTHO05D002206 4.6e-10 68.9 156 37.2
BcaC04g23772 Brassica carinata HOM05D002211 ORTHO05D002206 6.0e-10 68.6 156 34.0
C09p04850 Brassica napus HOM05D004226 ORTHO05D004842 6.0e-10 68.6 156 34.0
THA.LOC104822468 Tarenaya hassleriana HOM05D002211 ORTHO05D002206 6.0e-10 68.6 155 36.1
TAR633G0017 Trochodendron aralioides HOM05D002211 ORTHO05D002206 5.1e-09 65.5 179 31.3
Aqoxy5G00111 Aquilegia oxysepala HOM05D002211 ORTHO05D002206 6.6e-09 65.1 151 35.8
Nn1g08275 Nelumbo nucifera HOM05D002211 ORTHO05D002206 6.6e-09 65.1 160 34.4
Nn5g27522 Nelumbo nucifera HOM05D002211 ORTHO05D002206 6.6e-09 65.1 162 34.0
unitig_60.g25577 Utricularia gibba HOM05D002211 ORTHO05D002206 1.1e-08 64.3 86 46.5
Actinidia34547 Actinidia chinensis HOM05D002211 ORTHO05D002206 7.3e-08 61.6 93 40.9
TAR365G1226 Trochodendron aralioides HOM05D002211 ORTHO05D002206 9.6e-08 61.2 153 32.7
SHI10300 Sapria himalayana HOM05D002211 ORTHO05D002206 2.1e-07 60.1 197 29.9
TAR365G0725 Trochodendron aralioides HOM05D002211 ORTHO05D002206 4.7e-07 58.9 154 31.8
GSVIVG01026373001 Vitis vinifera HOM05D002211 ORTHO05D002206 4.7e-07 58.9 149 30.2
Aqoxy5G00107 Aquilegia oxysepala HOM05D002211 ORTHO05D002206 6.2e-07 58.5 159 30.8
Peaxi162Scf00071g00139 Petunia axillaris HOM05D002211 ORTHO05D002206 1.1e-06 57.8 167 30.5
CDE02G4254 Ceratophyllum demersum HOM05D002211 ORTHO05D002206 1.4e-06 57.4 139 31.7
CDE11G1194 Ceratophyllum demersum HOM05D002211 ORTHO05D002206 3.1e-06 56.2 144 29.2
MBI07_g44687_MAGBIO Magnolia biondii HOM05D002211 ORTHO05D002206 4.0e-06 55.8 176 27.3
TAR636G2930 Trochodendron aralioides HOM05D002211 ORTHO05D002206 4.0e-06 55.8 166 30.7
TPR.G26810 Trifolium pratense HOM05D002211 ORTHO05D002206 5.2e-06 55.5 142 31.0
FAN05G2499 Fragaria x ananassa HOM05D002211 ORTHO05D002206 6.8e-06 55.1 181 29.3
Manes.08G147100 Manihot esculenta HOM05D002211 ORTHO05D002206 6.8e-06 55.1 184 30.4
Rhsim09G0131800 Rhododendron simsii HOM05D002211 ORTHO05D002206 6.8e-06 55.1 154 31.2


User provided reference genes

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