Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc17g0000380 Simmondsia chinensis HOM05D005254 ORTHO05D007557 0.0e+00 2405.9 1196 100.0
Hund09648 Selenicereus undatus HOM05D005254 ORTHO05D007557 0.0e+00 1825.4 1191 73.6
GSVIVG01028140001 Vitis vinifera HOM05D005254 ORTHO05D007557 0.0e+00 1761.1 1193 70.5
AUR62043231 Chenopodium quinoa HOM05D005254 ORTHO05D007557 0.0e+00 1758.4 1232 68.9
Ah.02g112410 Amaranthus hybridus HOM05D005254 ORTHO05D007557 0.0e+00 1750.7 1201 70.2
Actinidia25861 Actinidia chinensis HOM05D005254 ORTHO05D007557 0.0e+00 1735.7 1202 69.2
Dinv10118 Davidia involucrata HOM05D005254 ORTHO05D007557 0.0e+00 1730.7 1191 70.0
TAR633G1480 Trochodendron aralioides HOM05D005254 ORTHO05D007557 0.0e+00 1726.1 1191 69.4
Rhsim01G0292000 Rhododendron simsii HOM05D005254 ORTHO05D007557 0.0e+00 1715.3 1196 68.8
EL10As5g23556 Beta vulgaris HOM05D005254 ORTHO05D007557 0.0e+00 1714.1 1252 67.4
CSS0038291 Camellia sinensis var. sinensis HOM05D005254 ORTHO05D007557 0.0e+00 1709.5 1196 68.9
Nn3g21729 Nelumbo nucifera HOM05D005254 ORTHO05D007557 0.0e+00 1709.1 1178 69.6
Thecc.01G315800 Theobroma cacao HOM05D005254 ORTHO05D007557 0.0e+00 1701.8 1196 68.8
Gorai.004G144800 Gossypium raimondii HOM05D005254 ORTHO05D007557 0.0e+00 1697.6 1191 68.4
Gohir.D08G140700 Gossypium hirsutum HOM05D005254 ORTHO05D007557 0.0e+00 1694.9 1191 68.4
Duzib133G0392 Durio zibethinus HOM05D005254 ORTHO05D007557 0.0e+00 1694.5 1195 67.8
Ciclev10018561m.g Citrus clementina HOM05D005254 ORTHO05D007557 0.0e+00 1683.7 1204 68.6
COL.COLO4_23211 Corchorus olitorius HOM05D005254 ORTHO05D007557 0.0e+00 1680.6 1232 67.0
Hma1.2p1_0486F.1_g163430 Hydrangea macrophylla HOM05D005254 ORTHO05D007557 0.0e+00 1679.8 1190 69.1
Atru.chr5.974 Acer truncatum HOM05D005254 ORTHO05D007557 0.0e+00 1679.5 1203 67.2
Manes.05G014200 Manihot esculenta HOM05D005254 ORTHO05D007557 0.0e+00 1677.9 1196 67.7
Gohir.A08G119800 Gossypium hirsutum HOM05D005254 ORTHO05D007557 0.0e+00 1676.4 1191 67.7
CiPaw.07G119100 Carya illinoinensis HOM05D005254 ORTHO05D007557 0.0e+00 1672.9 1191 66.8
Cfa005773 Carpinus fangiana HOM05D005254 ORTHO05D007557 0.0e+00 1672.5 1170 68.5
QL12p019422 Quercus lobata HOM05D005254 ORTHO05D007557 0.0e+00 1671.0 1193 67.5
Potri.002G194000 Populus trichocarpa HOM05D005254 ORTHO05D007557 0.0e+00 1659.8 1202 66.5
RcHm_v2.0_Chr3g0487381 Rosa chinensis HOM05D005254 ORTHO05D007557 0.0e+00 1659.0 1198 66.7
AUR62032507 Chenopodium quinoa HOM05D005254 ORTHO05D007557 0.0e+00 1656.7 1232 66.0
MD17G1277500 Malus domestica HOM05D005254 ORTHO05D007557 0.0e+00 1651.0 1192 66.9
Eucgr.H00999 Eucalyptus grandis HOM05D005254 ORTHO05D007557 0.0e+00 1644.8 1194 66.6
FAN26G2945 Fragaria x ananassa HOM05D005254 ORTHO05D007557 0.0e+00 1643.2 1196 66.3
FvH4_1g27060 Fragaria vesca HOM05D005254 ORTHO05D007557 0.0e+00 1641.3 1196 66.3
CANSAT25G1517 Cannabis sativa HOM05D005254 ORTHO05D007557 0.0e+00 1640.9 1177 66.9
FAN19G0333 Fragaria x ananassa HOM05D005254 ORTHO05D007557 0.0e+00 1640.6 1196 66.5
MD09G1284300 Malus domestica HOM05D005254 ORTHO05D007557 0.0e+00 1632.8 1196 65.9
MBI18_g03638_MAGBIO Magnolia biondii HOM05D005254 ORTHO05D007557 0.0e+00 1632.5 1209 65.8
PGR083G2196 Punica granatum HOM05D005254 ORTHO05D007557 0.0e+00 1630.9 1201 66.6
HanXRQChr01g0000761 Helianthus annuus HOM05D005254 ORTHO05D007557 0.0e+00 1628.2 1195 66.3
Glyma.03G220700 Glycine max HOM05D005254 ORTHO05D007557 0.0e+00 1619.4 1191 65.7
Sp5g01040 Schrenkiella parvula HOM05D005254 ORTHO05D007557 0.0e+00 1616.3 1195 65.6
Lj1g0000440 Lotus japonicus HOM05D005254 ORTHO05D007557 0.0e+00 1615.1 1194 65.7
VMungo1383G0540 Vigna mungo HOM05D005254 ORTHO05D007557 0.0e+00 1615.1 1191 65.7
Glyma.19G217500 Glycine max HOM05D005254 ORTHO05D007557 0.0e+00 1610.5 1191 65.8
Ca_09219_v3 Cicer arietinum L. HOM05D005254 ORTHO05D007557 0.0e+00 1609.0 1206 64.8
Phvul.001G214200 Phaseolus vulgaris HOM05D005254 ORTHO05D007557 0.0e+00 1609.0 1191 65.5
Psat0s425g0240 Pisum sativum HOM05D005254 ORTHO05D007557 0.0e+00 1609.0 1194 64.7
Medtr7g109730 Medicago truncatula HOM05D005254 ORTHO05D007557 0.0e+00 1606.3 1192 65.3
AL5G45120 Arabidopsis lyrata HOM05D005254 ORTHO05D007557 0.0e+00 1605.1 1194 64.8
TPR.G4086 Trifolium pratense HOM05D005254 ORTHO05D007557 0.0e+00 1604.7 1199 65.5
TWI36G0433 Tripterygium wilfordii HOM05D005254 ORTHO05D007557 0.0e+00 1603.6 1200 65.4
A09p54350 Brassica napus HOM05D005254 ORTHO05D007557 0.0e+00 1601.6 1200 65.2
Aqoxy5G02683 Aquilegia oxysepala HOM05D005254 ORTHO05D007557 0.0e+00 1599.7 1202 64.4
Cc01_g21580 Coffea canephora HOM05D005254 ORTHO05D007557 0.0e+00 1597.8 1179 64.7
arahy.Tifrunner.gnm1.ann1.AYF5PU Arachis hypogaea HOM05D005254 ORTHO05D007557 0.0e+00 1597.0 1227 63.7
AT3G62360 Arabidopsis thaliana HOM05D005254 ORTHO05D007557 0.0e+00 1596.3 1196 64.5
Thhalv10005752m.g Eutrema salsugineum HOM05D005254 ORTHO05D007557 0.0e+00 1594.7 1194 64.8
C08p37230 Brassica napus HOM05D005254 ORTHO05D007557 0.0e+00 1594.3 1200 65.2
Migut.N00932 Erythranthe guttata HOM05D005254 ORTHO05D007557 0.0e+00 1592.8 1197 63.3
BraA09t40847Z Brassica rapa HOM05D005254 ORTHO05D007557 0.0e+00 1592.0 1210 64.7
CsaV3_7G030070 Cucumis sativus L. HOM05D005254 ORTHO05D007557 0.0e+00 1591.2 1192 64.4
Lalb_Chr04g0260001 Lupinus albus HOM05D005254 ORTHO05D007557 0.0e+00 1590.1 1194 65.0
CARHR172690 Cardamine hirsuta HOM05D005254 ORTHO05D007557 0.0e+00 1587.0 1195 64.4
Sed0001136 Sechium edule HOM05D005254 ORTHO05D007557 0.0e+00 1583.5 1202 63.3
CAN.G1280.35 Capsicum annuum HOM05D005254 ORTHO05D007557 0.0e+00 1580.8 1195 63.3
BolC8t51301H Brassica oleracea HOM05D005254 ORTHO05D007557 0.0e+00 1580.5 1224 64.0
Carub.0005s2908 Capsella rubella HOM05D005254 ORTHO05D007557 0.0e+00 1580.5 1197 64.0
THA.LOC104802150 Tarenaya hassleriana HOM05D005254 ORTHO05D007557 0.0e+00 1580.5 1203 64.2
Peaxi162Scf00058g02631 Petunia axillaris HOM05D005254 ORTHO05D007557 0.0e+00 1580.1 1196 63.2
Sed0015859 Sechium edule HOM05D005254 ORTHO05D007557 0.0e+00 1574.7 1192 63.9
ECA248G2092 Erigeron canadensis HOM05D005254 ORTHO05D007557 0.0e+00 1572.8 1182 64.1
Lalb_Chr15g0078051 Lupinus albus HOM05D005254 ORTHO05D007557 0.0e+00 1572.8 1191 64.5
DCAR_018280 Daucus carota HOM05D005254 ORTHO05D007557 0.0e+00 1572.4 1205 63.8
MSTRG.17387 Avicennia marina HOM05D005254 ORTHO05D007557 0.0e+00 1571.6 1193 63.6
SalBow2G1139 Salvia bowleyana HOM05D005254 ORTHO05D007557 0.0e+00 1568.9 1201 62.8
Lsat_1_v5_gn_5_191360 Lactuca sativa HOM05D005254 ORTHO05D007557 0.0e+00 1563.5 1166 64.2
ClCG09G004990 Citrullus lanatus HOM05D005254 ORTHO05D007557 0.0e+00 1562.7 1196 63.0
Sabra02G0162400 Salix brachista HOM05D005254 ORTHO05D007557 0.0e+00 1561.2 1310 59.7
Aa31LG10G16290 Aethionema arabicum HOM05D005254 ORTHO05D007557 0.0e+00 1560.8 1195 62.8
Solyc06g009530.3 Solanum lycopersicum HOM05D005254 ORTHO05D007557 0.0e+00 1559.3 1197 62.3
Sopen06g004190 Solanum pennellii HOM05D005254 ORTHO05D007557 0.0e+00 1555.8 1197 62.2
PSO170G0810 Papaver somniferum HOM05D005254 ORTHO05D007557 0.0e+00 1554.3 1198 63.8
arahy.Tifrunner.gnm1.ann1.72UXVZ Arachis hypogaea HOM05D005254 ORTHO05D007557 0.0e+00 1551.2 1200 63.3
ATR0693G194 Amborella trichopoda HOM05D005254 ORTHO05D007557 0.0e+00 1550.8 1178 63.6
PSO357G0205 Papaver somniferum HOM05D005254 ORTHO05D007557 0.0e+00 1543.9 1198 63.6
Nitab4.5_0007407g0050 Nicotiana tabacum HOM05D005254 ORTHO05D007557 0.0e+00 1529.6 1154 63.7
Nitab4.5_0000363g0240 Nicotiana tabacum HOM05D005254 ORTHO05D007557 0.0e+00 1526.9 1263 60.1
MELO3C015914.2 Cucumis melo HOM05D005254 ORTHO05D007557 0.0e+00 1522.7 1128 64.5
BcaC07g40720 Brassica carinata HOM05D005254 ORTHO05D007557 0.0e+00 1517.3 1200 63.1
CDE01G0437 Ceratophyllum demersum HOM05D005254 ORTHO05D007557 0.0e+00 1496.9 1190 61.1
Prupe.3G010500 Prunus persica HOM05D005254 ORTHO05D007557 0.0e+00 1458.7 1012 68.1
SGA_v2.0_scaffold6G03340 Striga asiatica HOM05D005254 ORTHO05D007557 0.0e+00 1441.4 1271 57.8
CSS0023845 Camellia sinensis var. sinensis HOM05D005254 ORTHO05D007557 0.0e+00 1432.5 1018 67.9
Zm00001eb340350 Zea mays HOM05D005254 ORTHO05D007557 0.0e+00 1420.6 1189 58.3
HPP92_011729 Vanilla planifolia HOM05D005254 ORTHO05D007557 0.0e+00 1408.3 1188 58.2
SEGI_30263 Sequoiadendron giganteum HOM05D005254 ORTHO05D007557 0.0e+00 1371.3 1206 55.8
Hma1.2p1_0486F.1_g163440 Hydrangea macrophylla HOM05D005254 ORTHO05D007557 0.0e+00 1330.1 969 67.1
Lj1C15G16 Lonicera japonica HOM05D005254 ORTHO05D007557 0.0e+00 1296.2 986 64.0
Oeu049924.2 Olea europaea HOM05D005254 ORTHO05D007557 0.0e+00 1292.3 1186 55.9
BcaC07g40722 Brassica carinata HOM05D005254 ORTHO05D007557 0.0e+00 1287.7 1209 57.1
C06p28230 Brassica napus HOM05D005254 ORTHO05D007557 0.0e+00 1223.0 1209 54.1
Mapoly0002s0320 Marchantia polymorpha HOM05D005254 ORTHO05D007557 0.0e+00 1219.1 1193 51.3
Haze_05067 Corylus avellana HOM05D005254 ORTHO05D007557 0.0e+00 1214.5 1191 53.1
Pp3c14_26400 Physcomitrium patens HOM05D005254 ORTHO05D007557 0.0e+00 1209.1 1203 51.5
unitig_22.g6696 Utricularia gibba HOM05D005254 ORTHO05D007557 0.0e+00 1183.3 1201 51.4
SMO145G0116 Selaginella moellendorffii HOM05D005254 ORTHO05D007557 0.0e+00 1145.6 1175 49.0
FAN23G1174 Fragaria x ananassa HOM05D005254 ORTHO05D007557 0.0e+00 1110.5 833 63.9
BcaC07g42749 Brassica carinata HOM05D005254 ORTHO05D007557 1.3e-296 1023.5 769 64.4
FAN28G1559 Fragaria x ananassa HOM05D005254 ORTHO05D007557 5.3e-293 1011.5 865 59.4
vmacro15104 Vaccinium macrocarpon HOM05D005254 ORTHO05D007557 5.1e-272 941.8 717 64.0
Cpa.g.sc18.77 Carica papaya HOM05D005254 ORTHO05D007557 7.7e-268 927.9 711 63.7
AagrBONN_evm.TU.Sc2ySwM_344.3074 Anthoceros agrestis HOM05D005254 ORTHO05D007557 4.1e-261 905.6 1062 45.1
CBR_g12556 Chara braunii HOM05D005254 ORTHO05D007557 3.1e-237 826.2 1107 41.6
Actinidia20982 Actinidia chinensis HOM05D005254 ORTHO05D007557 7.7e-236 821.6 1183 41.8
BcaC08g45197 Brassica carinata HOM05D005254 ORTHO05D007557 8.3e-230 801.6 584 66.4
Migut.O00532 Erythranthe guttata HOM05D005254 ORTHO05D007557 3.9e-211 739.6 489 71.0
CSS0046339 Camellia sinensis var. sinensis HOM05D005254 ORTHO05D007557 6.0e-204 715.7 561 64.0
vmacro15105 Vaccinium macrocarpon HOM05D005254 ORTHO05D007557 2.1e-201 707.2 490 70.2
Oeu031896.1 Olea europaea HOM05D005254 ORTHO05D007557 2.5e-194 683.7 753 49.7
FAN23G1589 Fragaria x ananassa HOM05D005254 ORTHO05D007557 1.7e-145 521.5 400 63.0
Os01g0300600 Oryza sativa ssp. japonica HOM05D005254 ORTHO05D007557 2.1e-140 504.6 411 62.0
BcaC08g45196 Brassica carinata HOM05D005254 ORTHO05D007557 9.7e-138 495.7 589 48.0
SMO145G0011 Selaginella moellendorffii HOM05D005254 ORTHO05D007557 2.5e-125 454.5 718 37.9
Cpa.g.sc18.72 Carica papaya HOM05D005254 ORTHO05D007557 1.2e-98 365.9 259 68.3
BolC6t37993H Brassica oleracea HOM05D005254 ORTHO05D012489 8.6e-94 349.7 374 48.9
Cpa.g.sc18.74 Carica papaya HOM05D005254 ORTHO05D031611 9.3e-72 276.6 280 51.1
Lj1A15G51 Lonicera japonica HOM05D005254 ORTHO05D007557 5.3e-59 234.2 179 64.2
SalBow3G0325 Salvia bowleyana HOM05D005254 ORTHO05D007557 6.9e-59 233.8 287 43.2
LjContig00310g0001105 Lotus japonicus HOM05D005254 ORTHO05D007557 1.0e-54 219.9 202 56.9
SalBow2G0161 Salvia bowleyana HOM05D005254 ORTHO05D355854 1.3e-52 213.0 306 39.9
Psat0s2295g0200 Pisum sativum HOM05D005254 ORTHO05D031611 7.1e-48 197.2 236 45.8
TWI18G0218 Tripterygium wilfordii HOM05D005254 ORTHO05D007557 1.1e-45 189.9 141 61.0
BolC6t37991H Brassica oleracea HOM05D005254 ORTHO05D007557 2.6e-29 135.6 164 46.3
arahy.Tifrunner.gnm1.ann1.4QV716 Arachis hypogaea HOM05D005254 ORTHO05D031611 1.1e-27 130.2 148 51.4
Psat4g159280 Pisum sativum HOM05D000515 ORTHO05D020117 2.0e-18 99.4 72 61.1
EL10Ac4g10003 Beta vulgaris HOM05D005254 ORTHO05D007557 9.4e-16 90.5 68 64.7
CAN.G277.2 Capsicum annuum HOM05D005254 ORTHO05D115212 8.0e-15 87.4 202 33.2
SMO145G0128 Selaginella moellendorffii HOM05D005254 ORTHO05D374975 5.2e-14 84.7 312 24.4
CBR_g12551 Chara braunii HOM05D005254 ORTHO05D131495 2.2e-12 79.3 92 48.9
Actinidia23681 Actinidia chinensis HOM05D005254 ORTHO05D055336 6.5e-09 67.8 53 62.3
CAN.G2.2 Capsicum annuum HOM05D000004 ORTHO05D000002 1.9e-08 66.2 44 65.9
Actinidia04350 Actinidia chinensis HOM05D002713 ORTHO05D007644 3.2e-08 65.5 86 45.3
CAN.G317.3 Capsicum annuum HOM05D005254 ORTHO05D115878 1.2e-07 63.5 94 43.6
Nn8g39934 Nelumbo nucifera HOM05D005254 ORTHO05D278817 2.7e-07 62.4 45 62.2


User provided reference genes

Program Settings