Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc16g0011470 Simmondsia chinensis HOM05D005612 ORTHO05D007014 2.3e-207 725.3 361 100.0
Hund07502 Selenicereus undatus HOM05D005612 ORTHO05D007014 6.1e-144 514.6 371 71.2
EL10Ac4g10240 Beta vulgaris HOM05D005612 ORTHO05D007014 1.5e-142 510.0 347 73.8
AUR62000130 Chenopodium quinoa HOM05D005612 ORTHO05D007014 4.4e-142 508.4 356 73.3
QL08p052678 Quercus lobata HOM05D005612 ORTHO05D007014 1.5e-134 483.4 351 71.5
vmacro13411 Vaccinium macrocarpon HOM05D005612 ORTHO05D007014 4.8e-133 478.4 350 70.3
Ciclev10010228m.g Citrus clementina HOM05D005612 ORTHO05D007014 3.5e-131 472.2 348 69.3
Hma1.2p1_2025F.1_g311480 Hydrangea macrophylla HOM05D005612 ORTHO05D007014 3.5e-131 472.2 348 68.7
GSVIVG01027677001 Vitis vinifera HOM05D005612 ORTHO05D007014 1.0e-130 470.7 349 68.2
CSS0047351 Camellia sinensis var. sinensis HOM05D005612 ORTHO05D007014 1.7e-130 469.9 349 69.3
TAR375G1134 Trochodendron aralioides HOM05D005612 ORTHO05D007014 5.0e-130 468.4 349 68.8
Dinv43696 Davidia involucrata HOM05D005612 ORTHO05D007014 1.9e-129 466.5 343 69.7
Actinidia12252 Actinidia chinensis HOM05D005612 ORTHO05D007014 3.2e-129 465.7 350 68.6
Atru.chr2.2479 Acer truncatum HOM05D005612 ORTHO05D007014 7.2e-129 464.5 349 67.6
Hma1.2p1_0511F.1_g169190 Hydrangea macrophylla HOM05D005612 ORTHO05D007014 9.4e-129 464.2 348 67.8
Ah.04g161950 Amaranthus hybridus HOM05D004275 ORTHO05D005720 6.1e-128 461.5 384 64.6
CsaV3_3G009760 Cucumis sativus L. HOM05D005612 ORTHO05D007014 1.4e-127 460.3 341 68.3
CiPaw.01G263000 Carya illinoinensis HOM05D005612 ORTHO05D007014 6.8e-127 458.0 347 68.0
Sed0014004 Sechium edule HOM05D005612 ORTHO05D007014 1.2e-126 457.2 341 67.7
Aqoxy1G04104 Aquilegia oxysepala HOM05D005612 ORTHO05D007014 1.5e-126 456.8 352 66.8
Lalb_Chr03g0039601 Lupinus albus HOM05D005612 ORTHO05D007014 4.4e-126 455.3 347 66.6
Nn4g26368 Nelumbo nucifera HOM05D005612 ORTHO05D007014 9.8e-126 454.1 349 66.2
Potri.014G068500 Populus trichocarpa HOM05D005612 ORTHO05D007014 1.7e-125 453.4 345 68.7
Aqoxy3G02061 Aquilegia oxysepala HOM05D005612 ORTHO05D007014 2.2e-125 453.0 352 66.8
TWI14G1300 Tripterygium wilfordii HOM05D005612 ORTHO05D007014 2.2e-125 453.0 348 64.7
Haze_16797 Corylus avellana HOM05D005612 ORTHO05D007014 2.8e-125 452.6 321 70.7
Prupe.6G155400 Prunus persica HOM05D005612 ORTHO05D007014 3.7e-125 452.2 349 66.8
Lj3g0004128 Lotus japonicus HOM05D005612 ORTHO05D007014 6.3e-125 451.4 348 68.1
Carub.0004s2795 Capsella rubella HOM05D005612 ORTHO05D007014 1.4e-124 450.3 347 65.7
PSO339G2081 Papaver somniferum HOM05D005612 ORTHO05D007014 1.4e-124 450.3 344 68.0
Sabra14G0048200 Salix brachista HOM05D005612 ORTHO05D007014 1.4e-124 450.3 345 69.3
CANSAT01G1400 Cannabis sativa HOM05D005612 ORTHO05D007014 5.4e-124 448.4 349 67.0
Thecc.01G378200 Theobroma cacao HOM05D005612 ORTHO05D007014 5.4e-124 448.4 368 65.2
Gorai.004G162600 Gossypium raimondii HOM05D005612 ORTHO05D007014 9.2e-124 447.6 367 63.8
PSO384G4101 Papaver somniferum HOM05D005612 ORTHO05D007014 1.6e-123 446.8 344 67.2
DCAR_008555 Daucus carota HOM05D005612 ORTHO05D007014 2.0e-123 446.4 349 65.0
FAN28G0581 Fragaria x ananassa HOM05D005612 ORTHO05D007014 7.7e-123 444.5 349 65.6
THA.LOC104827614 Tarenaya hassleriana HOM05D005612 ORTHO05D007014 7.7e-123 444.5 347 64.6
Oeu055499.1 Olea europaea HOM05D005612 ORTHO05D007014 1.7e-122 443.4 344 65.1
RcHm_v2.0_Chr3g0497141 Rosa chinensis HOM05D005612 ORTHO05D007014 2.3e-122 443.0 349 66.8
Duzib138G1608 Durio zibethinus HOM05D005612 ORTHO05D007014 3.8e-122 442.2 366 63.7
Manes.01G266600 Manihot esculenta HOM05D005612 ORTHO05D007014 3.8e-122 442.2 349 64.8
Glyma.12G134000 Glycine max HOM05D005612 ORTHO05D007014 5.0e-122 441.8 348 67.0
MD00G1094900 Malus domestica HOM05D005612 ORTHO05D007014 5.0e-122 441.8 355 65.9
arahy.Tifrunner.gnm1.ann1.39QM8U Arachis hypogaea HOM05D005612 ORTHO05D007014 6.6e-122 441.4 348 67.5
Phvul.011G138100 Phaseolus vulgaris HOM05D005612 ORTHO05D007014 8.6e-122 441.0 348 66.1
TPR.G17234 Trifolium pratense HOM05D005612 ORTHO05D007014 1.5e-121 440.3 347 66.9
Cpa.g.sc18.108 Carica papaya HOM05D005612 ORTHO05D007014 1.9e-121 439.9 342 67.0
ClCG05G002330 Citrullus lanatus HOM05D005612 ORTHO05D007014 1.9e-121 439.9 356 64.0
Cfa015219 Carpinus fangiana HOM05D005612 ORTHO05D007014 2.5e-121 439.5 323 68.4
Gohir.A08G135500 Gossypium hirsutum HOM05D005612 ORTHO05D007014 2.5e-121 439.5 366 62.8
FvH4_1g28100 Fragaria vesca HOM05D005612 ORTHO05D007014 5.6e-121 438.3 349 65.3
FAN28G2973 Fragaria x ananassa HOM05D005612 ORTHO05D007014 5.6e-121 438.3 349 65.3
Psat0s2995g0040 Pisum sativum HOM05D005612 ORTHO05D007014 9.5e-121 437.6 347 66.0
FAN23G2738 Fragaria x ananassa HOM05D005612 ORTHO05D007014 1.2e-120 437.2 349 65.0
arahy.Tifrunner.gnm1.ann1.Q1YE57 Arachis hypogaea HOM05D005612 ORTHO05D007014 1.6e-120 436.8 343 67.6
COL.COLO4_12531 Corchorus olitorius HOM05D005612 ORTHO05D007014 1.6e-120 436.8 333 67.3
MELO3C006197.2 Cucumis melo HOM05D005612 ORTHO05D007014 1.6e-120 436.8 330 67.9
Glyma.06G270700 Glycine max HOM05D005612 ORTHO05D007014 1.6e-120 436.8 348 64.9
Eucgr.E01443 Eucalyptus grandis HOM05D005612 ORTHO05D007014 2.8e-120 436.0 352 64.8
Lalb_Chr01g0021461 Lupinus albus HOM05D005612 ORTHO05D007014 4.7e-120 435.3 347 64.8
Cc02_g24020 Coffea canephora HOM05D005612 ORTHO05D007014 1.0e-119 434.1 348 63.5
AT2G45320 Arabidopsis thaliana HOM05D005612 ORTHO05D007014 1.4e-119 433.7 348 64.1
AL4G44420 Arabidopsis lyrata HOM05D005612 ORTHO05D007014 4.0e-119 432.2 348 64.1
Nitab4.5_0000264g0010 Nicotiana tabacum HOM05D005612 ORTHO05D007014 6.8e-119 431.4 346 63.3
FAN26G0204 Fragaria x ananassa HOM05D005612 ORTHO05D007014 2.6e-118 429.5 371 61.2
Manes.05G046700 Manihot esculenta HOM05D005612 ORTHO05D007014 2.6e-118 429.5 348 64.4
PGR042G0232 Punica granatum HOM05D005612 ORTHO05D007014 2.2e-117 426.4 343 63.0
Thhalv10001485m.g Eutrema salsugineum HOM05D005612 ORTHO05D007014 1.1e-116 424.1 344 63.1
ECA236G2759 Erigeron canadensis HOM05D005612 ORTHO05D007014 2.4e-116 422.9 348 62.1
Medtr4g053430 Medicago truncatula HOM05D005612 ORTHO05D007014 2.4e-116 422.9 305 70.5
Ca_19396_v3 Cicer arietinum L. HOM05D005612 ORTHO05D007014 7.0e-116 421.4 304 69.4
Sopen08g002560 Solanum pennellii HOM05D005612 ORTHO05D007014 1.0e-114 417.5 348 62.4
Gohir.D08G156300 Gossypium hirsutum HOM05D005612 ORTHO05D007014 1.7e-114 416.8 352 62.5
Solyc08g006610.3 Solanum lycopersicum HOM05D005612 ORTHO05D007014 1.7e-114 416.8 348 62.1
Lsat_1_v5_gn_7_9741 Lactuca sativa HOM05D005612 ORTHO05D007014 3.0e-114 416.0 327 65.1
CAN.G530.1 Capsicum annuum HOM05D005612 ORTHO05D007014 8.6e-114 414.5 348 61.8
Lsat_1_v5_gn_8_86120 Lactuca sativa HOM05D005612 ORTHO05D007014 1.5e-113 413.7 321 65.7
Peaxi162Scf00045g01936 Petunia axillaris HOM05D005612 ORTHO05D007014 1.5e-113 413.7 346 61.8
BraA03t11718Z Brassica rapa HOM05D005612 ORTHO05D007014 2.5e-113 412.9 346 62.7
Sp4g27340 Schrenkiella parvula HOM05D005612 ORTHO05D007014 2.5e-113 412.9 343 61.2
MSTRG.17178 Avicennia marina HOM05D005612 ORTHO05D007014 3.3e-113 412.5 344 61.0
A03p25180 Brassica napus HOM05D005612 ORTHO05D007014 7.3e-113 411.4 345 62.0
Migut.B01623 Erythranthe guttata HOM05D005612 ORTHO05D007014 2.1e-112 409.8 344 61.0
BcaC01g05140 Brassica carinata HOM05D005612 ORTHO05D007014 4.7e-112 408.7 344 62.8
BolC3t15349H Brassica oleracea HOM05D005612 ORTHO05D007014 4.7e-112 408.7 344 62.8
BcaB01g03271 Brassica carinata HOM05D005612 ORTHO05D007014 8.0e-112 407.9 344 61.0
C03p30020 Brassica napus HOM05D005612 ORTHO05D007014 3.1e-111 406.0 345 61.4
PGSC0003DMG400026305 Solanum tuberosum HOM05D005612 ORTHO05D007014 2.0e-110 403.3 327 63.3
unitig_749.g14376 Utricularia gibba HOM05D005612 ORTHO05D007014 3.2e-108 396.0 343 60.1
HanXRQChr04g0122751 Helianthus annuus HOM05D005612 ORTHO05D007014 7.0e-108 394.8 343 60.3
vmacro21020 Vaccinium macrocarpon HOM05D005612 ORTHO05D007014 2.0e-107 393.3 352 59.9
SalBow5G3218 Salvia bowleyana HOM05D005612 ORTHO05D007014 2.3e-106 389.8 326 61.7
Lj7C530T5 Lonicera japonica HOM05D005612 ORTHO05D007014 4.3e-105 385.6 377 56.2
CDE07G1659 Ceratophyllum demersum HOM05D005612 ORTHO05D007014 8.1e-104 381.3 347 58.8
AUR62019310 Chenopodium quinoa HOM05D005612 ORTHO05D007014 1.0e-98 364.4 221 79.2
ATR1100G025 Amborella trichopoda HOM05D005612 ORTHO05D007014 1.5e-97 360.5 320 58.1
Nitab4.5_0005450g0010 Nicotiana tabacum HOM05D005612 ORTHO05D007014 7.3e-97 358.2 346 55.8
Zm00001eb195050 Zea mays HOM05D005612 ORTHO05D007014 1.7e-90 337.0 335 53.7
VMungo1127G0102 Vigna mungo HOM05D005612 ORTHO05D007014 5.1e-82 308.9 210 70.0
ATR0686G054 Amborella trichopoda HOM05D005612 ORTHO05D007014 1.5e-81 307.4 263 58.6
unitig_76.g29085 Utricularia gibba HOM05D005612 ORTHO05D007014 9.0e-71 271.6 342 45.3
MBI14_g08144_MAGBIO Magnolia biondii HOM05D005612 ORTHO05D007014 3.8e-69 266.2 226 59.7
SGA_v2.0_scaffold153G37000 Striga asiatica HOM05D005612 ORTHO05D007014 2.4e-68 263.5 227 61.7
CARHR140520 Cardamine hirsuta HOM05D005612 ORTHO05D007014 3.0e-66 256.5 160 77.5
CiPaw.09G176500 Carya illinoinensis HOM05D005612 ORTHO05D007014 3.0e-66 256.5 285 49.5
Aa31LG1G26830 Aethionema arabicum HOM05D005612 ORTHO05D007014 2.8e-64 250.0 144 81.2
Dinv32369 Davidia involucrata HOM05D005612 ORTHO05D007014 9.0e-63 245.0 195 67.7
Zm00001eb012290 Zea mays HOM05D005612 ORTHO05D007014 1.3e-61 241.1 189 60.8
AagrBONN_evm.TU.Sc2ySwM_117.669 Anthoceros agrestis HOM05D005612 ORTHO05D007014 2.2e-53 213.8 233 47.2
SMO119G0175 Selaginella moellendorffii HOM05D005612 ORTHO05D007014 2.9e-53 213.4 236 46.6
Zm00001eb249030 Zea mays HOM05D005612 ORTHO05D007014 1.4e-52 211.1 161 62.1
Duzib138G0844 Durio zibethinus HOM05D005612 ORTHO05D007014 3.0e-50 203.4 121 76.9
CARHR140530 Cardamine hirsuta HOM05D005612 ORTHO05D007014 7.9e-43 178.7 186 52.2
Medtr8g102045 Medicago truncatula HOM05D005612 ORTHO05D007014 1.2e-38 164.9 136 62.5
Pp3c17_6010 Physcomitrium patens HOM05D005612 ORTHO05D007014 1.0e-37 161.8 168 48.2
Zm00001eb385140 Zea mays HOM05D005612 ORTHO05D007014 8.5e-37 158.7 134 57.5
Zm00001eb084960 Zea mays HOM05D005612 ORTHO05D007014 9.4e-36 155.2 134 56.7
FAN19G0199 Fragaria x ananassa HOM05D005612 ORTHO05D007014 1.2e-35 154.8 88 79.5
Gohir.A08G135200 Gossypium hirsutum HOM05D005612 ORTHO05D007014 6.3e-32 142.5 165 51.5
Oeu011925.1 Olea europaea HOM05D005612 ORTHO05D007014 2.4e-31 140.6 201 40.8
SEGI_33395 Sequoiadendron giganteum HOM05D005612 ORTHO05D007014 3.6e-27 126.7 181 45.3
MSTRG.28297 Avicennia marina HOM05D005612 ORTHO05D007014 7.5e-25 119.0 71 73.2
Glyma.20G076400 Glycine max HOM05D005612 ORTHO05D007014 9.7e-25 118.6 76 68.4
MBI14_g08143_MAGBIO Magnolia biondii HOM05D005612 ORTHO05D007014 8.2e-24 115.5 113 57.5
Gohir.A08G135550 Gossypium hirsutum HOM05D005612 ORTHO05D007014 1.8e-23 114.4 143 49.0
Zm00001eb321930 Zea mays HOM05D005612 ORTHO05D007014 1.0e-21 108.6 110 50.0
Rhsim01G0149000 Rhododendron simsii HOM05D005612 ORTHO05D007014 1.2e-19 101.7 210 33.8
Haze_18350 Corylus avellana HOM05D005612 ORTHO05D007014 1.6e-19 101.3 73 69.9
Zm00001eb270960 Zea mays HOM05D005612 ORTHO05D002685 4.7e-19 99.8 66 68.2
TAR626G0370 Trochodendron aralioides HOM05D005612 ORTHO05D007014 2.2e-16 90.9 45 84.4
Medtr8g102040 Medicago truncatula HOM05D005612 ORTHO05D007014 6.3e-16 89.4 88 48.9
Os06g0571300 Oryza sativa ssp. japonica HOM05D005612 ORTHO05D007014 2.9e-13 80.5 92 52.2
Medtr8g102042 Medicago truncatula HOM05D005612 ORTHO05D007014 5.0e-13 79.7 63 66.7


User provided reference genes

Program Settings