Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc16g0000140 Simmondsia chinensis HOM05D004306 ORTHO05D005055 2.8e-182 641.7 310 100.0
Sc16g0000120 Simmondsia chinensis HOM05D004306 ORTHO05D005055 1.2e-164 583.2 301 93.0
TWI09G0703 Tripterygium wilfordii HOM05D004306 ORTHO05D005055 1.3e-158 563.1 295 90.8
Manes.12G110500 Manihot esculenta HOM05D004306 ORTHO05D005055 1.1e-157 560.1 295 88.8
TPR.G23896 Trifolium pratense HOM05D004306 ORTHO05D005055 1.1e-157 560.1 295 89.2
Haze_15301 Corylus avellana HOM05D004306 ORTHO05D005055 1.4e-157 559.7 295 88.8
TAR628G0028 Trochodendron aralioides HOM05D004306 ORTHO05D005055 3.2e-157 558.5 297 87.9
GSVIVG01000140001 Vitis vinifera HOM05D004306 ORTHO05D005055 3.2e-157 558.5 300 88.0
AUR62003989 Chenopodium quinoa HOM05D004306 ORTHO05D005055 4.1e-157 558.1 299 88.0
Gohir.A11G216400 Gossypium hirsutum HOM05D004306 ORTHO05D005055 4.1e-157 558.1 300 87.7
Gohir.D11G207000 Gossypium hirsutum HOM05D004306 ORTHO05D005055 4.1e-157 558.1 300 87.7
Gorai.007G222100 Gossypium raimondii HOM05D004306 ORTHO05D005055 4.1e-157 558.1 300 87.7
MD15G1294800 Malus domestica HOM05D004306 ORTHO05D005055 5.4e-157 557.8 299 87.6
Hma1.2p1_0730F.1_g209845 Hydrangea macrophylla HOM05D004306 ORTHO05D005055 9.2e-157 557.0 297 87.9
Cpa.g.sc6.39 Carica papaya HOM05D004306 ORTHO05D005055 1.6e-156 556.2 296 87.5
Cfa004112 Carpinus fangiana HOM05D004306 ORTHO05D005055 1.6e-156 556.2 295 88.1
GSVIVG01000135001 Vitis vinifera HOM05D004306 ORTHO05D005055 2.0e-156 555.8 300 87.3
Dinv26913 Davidia involucrata HOM05D004306 ORTHO05D005055 2.7e-156 555.4 295 88.5
HanXRQChr14g0449471 Helianthus annuus HOM05D004306 ORTHO05D005055 2.7e-156 555.4 297 87.5
Duzib264G0002 Durio zibethinus HOM05D004306 ORTHO05D005055 3.5e-156 555.1 300 87.3
Rhsim10G0101200 Rhododendron simsii HOM05D004306 ORTHO05D005055 4.6e-156 554.7 295 88.5
GSVIVG01000137001 Vitis vinifera HOM05D004306 ORTHO05D005055 4.6e-156 554.7 300 87.7
Actinidia11991 Actinidia chinensis HOM05D004306 ORTHO05D005055 6.0e-156 554.3 295 88.5
Nn1g04599 Nelumbo nucifera HOM05D004306 ORTHO05D005055 6.0e-156 554.3 297 87.2
Eucgr.H02295 Eucalyptus grandis HOM05D004306 ORTHO05D005055 7.8e-156 553.9 300 88.0
Lj4A160T62 Lonicera japonica HOM05D004306 ORTHO05D005055 7.8e-156 553.9 295 87.8
Duzib187G0102 Durio zibethinus HOM05D004306 ORTHO05D005055 1.0e-155 553.5 300 87.0
Lalb_Chr16g0389191 Lupinus albus HOM05D004306 ORTHO05D005055 1.3e-155 553.1 297 87.5
CANSAT01G0675 Cannabis sativa HOM05D004306 ORTHO05D005055 1.7e-155 552.7 299 85.6
Atru.chr3.158 Acer truncatum HOM05D004306 ORTHO05D005055 2.3e-155 552.4 295 88.5
Atru.chr3.187 Acer truncatum HOM05D004306 ORTHO05D005055 2.3e-155 552.4 295 88.5
FvH4_1g17390 Fragaria vesca HOM05D004306 ORTHO05D005055 2.3e-155 552.4 299 87.3
FAN28G1176 Fragaria x ananassa HOM05D004306 ORTHO05D005055 2.3e-155 552.4 300 87.0
FAN26G3311 Fragaria x ananassa HOM05D004306 ORTHO05D005055 3.0e-155 552.0 299 87.3
Medtr4g095660 Medicago truncatula HOM05D004306 ORTHO05D005055 3.9e-155 551.6 299 86.3
AUR62040257 Chenopodium quinoa HOM05D004306 ORTHO05D005055 5.0e-155 551.2 299 87.0
Ciclev10025794m.g Citrus clementina HOM05D004306 ORTHO05D005055 5.0e-155 551.2 296 87.5
Prupe.6G223000 Prunus persica HOM05D004306 ORTHO05D005055 5.0e-155 551.2 299 86.3
Thecc.01G070200 Theobroma cacao HOM05D004306 ORTHO05D005055 5.0e-155 551.2 300 86.7
FAN23G0931 Fragaria x ananassa HOM05D004306 ORTHO05D005055 8.6e-155 550.4 299 87.0
Lsat_1_v5_gn_2_82860 Lactuca sativa HOM05D004306 ORTHO05D005055 8.6e-155 550.4 304 85.2
RcHm_v2.0_Chr2g0107581 Rosa chinensis HOM05D004306 ORTHO05D005055 8.6e-155 550.4 299 86.6
arahy.Tifrunner.gnm1.ann1.GV60EB Arachis hypogaea HOM05D004306 ORTHO05D005055 1.9e-154 549.3 303 85.1
ECA238G2426 Erigeron canadensis HOM05D004306 ORTHO05D005055 1.9e-154 549.3 295 86.8
Phvul.003G236000 Phaseolus vulgaris HOM05D004306 ORTHO05D005055 1.9e-154 549.3 298 86.6
Sed0025668 Sechium edule HOM05D004306 ORTHO05D005055 1.9e-154 549.3 295 86.8
Psat0ss839g0200 Pisum sativum HOM05D004306 ORTHO05D005055 2.5e-154 548.9 299 86.3
PGR102G2907 Punica granatum HOM05D004306 ORTHO05D005055 2.5e-154 548.9 300 86.0
CDE04G2054 Ceratophyllum demersum HOM05D004306 ORTHO05D005055 5.6e-154 547.7 304 85.5
Lj4g0006645 Lotus japonicus HOM05D004306 ORTHO05D005055 5.6e-154 547.7 295 86.8
CiPaw.02G003700 Carya illinoinensis HOM05D004306 ORTHO05D005055 9.5e-154 547.0 295 86.8
CsaV3_6G043980 Cucumis sativus L. HOM05D004306 ORTHO05D005055 9.5e-154 547.0 295 86.1
VMungo0251G0785 Vigna mungo HOM05D004306 ORTHO05D005055 9.5e-154 547.0 295 86.1
arahy.Tifrunner.gnm1.ann1.HR4B5C Arachis hypogaea HOM05D004306 ORTHO05D005055 1.2e-153 546.6 302 84.8
Glyma.17G161900 Glycine max HOM05D004306 ORTHO05D005055 1.2e-153 546.6 295 86.8
CSS0001342 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 1.6e-153 546.2 300 84.7
Aa31LG6G14430 Aethionema arabicum HOM05D004306 ORTHO05D005055 2.8e-153 545.4 299 85.6
Ca_13922_v3 Cicer arietinum L. HOM05D004306 ORTHO05D005055 2.8e-153 545.4 295 85.8
ClCG01G017440 Citrullus lanatus HOM05D004306 ORTHO05D005055 3.6e-153 545.0 295 85.8
PSO541G4466 Papaver somniferum HOM05D004306 ORTHO05D005055 3.6e-153 545.0 295 85.8
Thhalv10025180m.g Eutrema salsugineum HOM05D004306 ORTHO05D005055 4.7e-153 544.7 295 86.4
AL7G13210 Arabidopsis lyrata HOM05D004306 ORTHO05D005055 6.2e-153 544.3 302 84.1
FAN19G2263 Fragaria x ananassa HOM05D004306 ORTHO05D005055 6.2e-153 544.3 309 84.5
MBI16_g09132_MAGBIO Magnolia biondii HOM05D004306 ORTHO05D005055 1.8e-152 542.7 297 85.9
Potri.005G145400 Populus trichocarpa HOM05D004306 ORTHO05D005055 2.3e-152 542.3 295 86.4
AT4G37550 Arabidopsis thaliana HOM05D004306 ORTHO05D005055 4.0e-152 541.6 295 86.4
CARHR245950 Cardamine hirsuta HOM05D004306 ORTHO05D005055 4.0e-152 541.6 295 86.1
Oeu014230.2 Olea europaea HOM05D004306 ORTHO05D005055 8.9e-152 540.4 295 85.4
Aqoxy6G02701 Aquilegia oxysepala HOM05D004306 ORTHO05D005055 1.2e-151 540.0 295 85.4
THA.LOC104819873 Tarenaya hassleriana HOM05D004306 ORTHO05D005055 2.0e-151 539.3 332 78.3
AL7G13200 Arabidopsis lyrata HOM05D004306 ORTHO05D005055 2.6e-151 538.9 295 85.4
Hund13938 Selenicereus undatus HOM05D004306 ORTHO05D005055 3.4e-151 538.5 322 80.7
C01p01570 Brassica napus HOM05D004306 ORTHO05D005055 4.4e-151 538.1 295 86.1
Lj4g0023143 Lotus japonicus HOM05D004306 ORTHO05D005055 4.4e-151 538.1 295 86.1
Nitab4.5_0000651g0100 Nicotiana tabacum HOM05D004306 ORTHO05D005055 4.4e-151 538.1 295 85.4
Oeu040626.2 Olea europaea HOM05D004306 ORTHO05D005055 4.4e-151 538.1 295 85.1
Peaxi162Scf00264g00117 Petunia axillaris HOM05D004306 ORTHO05D005055 4.4e-151 538.1 295 85.8
Sp7g35230 Schrenkiella parvula HOM05D004306 ORTHO05D005055 7.5e-151 537.3 295 85.4
A01p01390 Brassica napus HOM05D004306 ORTHO05D005055 9.8e-151 537.0 295 85.8
BolC1t00152H Brassica oleracea HOM05D004306 ORTHO05D005055 9.8e-151 537.0 295 85.4
BraA01t00135Z Brassica rapa HOM05D004306 ORTHO05D005055 9.8e-151 537.0 295 85.8
PGSC0003DMG400024965 Solanum tuberosum HOM05D004306 ORTHO05D005055 1.3e-150 536.6 295 85.4
Carub.0007s0271 Capsella rubella HOM05D004306 ORTHO05D005055 1.7e-150 536.2 295 85.4
CAN.G1075.22 Capsicum annuum HOM05D004306 ORTHO05D005055 1.7e-150 536.2 295 85.4
vmacro05397 Vaccinium macrocarpon HOM05D004306 ORTHO05D005055 1.7e-150 536.2 290 87.2
Solyc02g092530.4 Solanum lycopersicum HOM05D004306 ORTHO05D005055 2.2e-150 535.8 295 85.4
Nitab4.5_0006069g0040 Nicotiana tabacum HOM05D004306 ORTHO05D005055 4.9e-150 534.6 295 85.1
CARHR245960 Cardamine hirsuta HOM05D004306 ORTHO05D005055 6.4e-150 534.3 295 84.4
Sopen02g037110 Solanum pennellii HOM05D004306 ORTHO05D005055 6.4e-150 534.3 295 85.1
EL10Ac6g15639 Beta vulgaris HOM05D004306 ORTHO05D005055 2.4e-149 532.3 299 84.9
BraA01t00136Z Brassica rapa HOM05D004306 ORTHO05D005055 2.4e-149 532.3 295 84.4
Cc07_g06920 Coffea canephora HOM05D004306 ORTHO05D005055 3.2e-149 531.9 295 83.7
Sp7g35240 Schrenkiella parvula HOM05D004306 ORTHO05D005055 4.1e-149 531.6 295 84.4
BolC1t00153H Brassica oleracea HOM05D004306 ORTHO05D005055 7.1e-149 530.8 295 83.7
Migut.L00204 Erythranthe guttata HOM05D004306 ORTHO05D005055 7.1e-149 530.8 296 85.1
SGA_v2.0_scaffold21G09395 Striga asiatica HOM05D004306 ORTHO05D005055 7.1e-149 530.8 295 84.7
BcaNung05904 Brassica carinata HOM05D004306 ORTHO05D005055 9.2e-149 530.4 295 83.7
C01p01580 Brassica napus HOM05D004306 ORTHO05D005055 9.2e-149 530.4 295 83.7
A01p01400 Brassica napus HOM05D004306 ORTHO05D005055 1.2e-148 530.0 295 83.7
Thhalv10025178m.g Eutrema salsugineum HOM05D004306 ORTHO05D005055 1.2e-148 530.0 295 84.4
AT4G37560 Arabidopsis thaliana HOM05D004306 ORTHO05D005055 2.7e-148 528.9 299 83.3
MSTRG.15357 Avicennia marina HOM05D004306 ORTHO05D005055 1.7e-147 526.2 295 84.1
Sabra05G0116200 Salix brachista HOM05D004306 ORTHO05D005055 1.5e-146 523.1 349 73.6
SalBow5G1134 Salvia bowleyana HOM05D004306 ORTHO05D005055 2.5e-146 522.3 295 82.4
SalBow5G1710 Salvia bowleyana HOM05D004306 ORTHO05D005055 4.3e-146 521.5 295 82.4
unitig_748.g8394 Utricularia gibba HOM05D004306 ORTHO05D005055 7.3e-146 520.8 302 81.5
Os01g0764900 Oryza sativa ssp. japonica HOM05D004306 ORTHO05D005055 2.2e-142 509.2 295 80.3
Zm00001eb370290 Zea mays HOM05D004306 ORTHO05D005055 4.9e-142 508.1 295 80.0
BcaNung05906 Brassica carinata HOM05D004306 ORTHO05D005055 6.6e-139 497.7 295 81.4
MELO3C007621.2 Cucumis melo HOM05D004306 ORTHO05D005055 4.7e-137 491.5 260 89.2
BcaNung05905 Brassica carinata HOM05D004306 ORTHO05D005055 1.4e-136 490.0 295 79.3
DCAR_025786 Daucus carota HOM05D004306 ORTHO05D005055 1.6e-132 476.5 265 84.5
Pp3c3_32950 Physcomitrium patens HOM05D004306 ORTHO05D005055 6.0e-132 474.6 299 74.2
SMO141G0231 Selaginella moellendorffii HOM05D004306 ORTHO05D005055 2.1e-129 466.1 297 74.4
Cre16.g691750 Chlamydomonas reinhardtii HOM05D004306 ORTHO05D005055 4.8e-129 464.9 295 76.6
CSS0047878 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 5.8e-127 458.0 278 78.1
Ah.02g125510 Amaranthus hybridus HOM05D004306 ORTHO05D005055 1.1e-122 443.7 279 76.7
Cfa004110 Carpinus fangiana HOM05D004306 ORTHO05D005055 1.4e-120 436.8 306 71.2
COL.COLO4_11552 Corchorus olitorius HOM05D004306 ORTHO05D005055 6.9e-120 434.5 235 87.2
HPP92_014148 Vanilla planifolia HOM05D004306 ORTHO05D005055 1.9e-117 426.4 236 84.7
ATR0019G017 Amborella trichopoda HOM05D004306 ORTHO05D005055 3.0e-115 419.1 225 86.2
CSS0039286 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 2.8e-113 412.5 300 67.3
CSS0041574 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 1.1e-106 390.6 226 81.9
HPP92_014166 Vanilla planifolia HOM05D004306 ORTHO05D005055 2.9e-94 349.4 272 66.5
Zm00001eb152190 Zea mays HOM05D004306 ORTHO05D005055 5.9e-79 298.5 164 81.1
SMO170G0023 Selaginella moellendorffii HOM05D004306 ORTHO05D005055 2.1e-76 290.0 232 61.6
Oeu013288.2 Olea europaea HOM05D004306 ORTHO05D005055 3.7e-73 279.3 293 54.3
DCAR_000330 Daucus carota HOM05D004306 ORTHO05D005055 2.4e-72 276.6 156 80.8
EL10Ac5g12500 Beta vulgaris HOM05D004306 ORTHO05D005055 1.6e-68 263.8 140 88.6
DCAR_025787 Daucus carota HOM05D004306 ORTHO05D005055 1.6e-68 263.8 143 86.0
SEGI_23023 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 1.3e-65 254.2 148 77.0
SEGI_32720 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 1.3e-62 244.2 143 79.0
MD00G1015600 Malus domestica HOM05D004306 ORTHO05D005055 3.8e-62 242.7 196 64.3
SEGI_27901 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 6.8e-59 231.9 147 73.5
COL.COLO4_11551 Corchorus olitorius HOM05D004306 ORTHO05D005055 6.1e-52 208.8 135 74.8
TPR.G23871 Trifolium pratense HOM05D004306 ORTHO05D005055 8.9e-43 178.3 107 80.4
ATR0019G021 Amborella trichopoda HOM05D004306 ORTHO05D005055 5.0e-38 162.5 128 63.3
Cfa025028 Carpinus fangiana HOM05D004306 ORTHO05D005055 1.9e-24 117.5 125 52.8
ATR0515G001 Amborella trichopoda HOM05D004306 ORTHO05D005055 4.1e-24 116.3 55 94.5
MD00G1015700 Malus domestica HOM05D004306 ORTHO05D005055 1.3e-14 84.7 47 74.5
SEGI_03818 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 2.3e-14 84.0 65 56.9
PRCOL_00001243 Prasinoderma coloniale HOM05D004306 ORTHO05D005055 2.2e-09 67.4 175 30.3
RcHm_v2.0_Chr2g0107621 Rosa chinensis HOM05D004306 ORTHO05D005055 1.4e-08 64.7 34 82.4


User provided reference genes

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