Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc15g0005720 Simmondsia chinensis HOM05D001879 ORTHO05D007648 0.0e+00 2159.4 1175 100.0
Dinv44962 Davidia involucrata HOM05D001879 ORTHO05D007648 4.0e-245 852.4 1300 47.3
EL10Ac1g02391 Beta vulgaris HOM05D001879 ORTHO05D007648 5.1e-240 835.5 1156 50.0
AUR62038814 Chenopodium quinoa HOM05D001879 ORTHO05D007648 8.4e-235 818.1 1084 45.4
Prupe.1G423900 Prunus persica HOM05D001879 ORTHO05D007648 8.1e-230 801.6 1190 46.1
Actinidia10192 Actinidia chinensis HOM05D001879 ORTHO05D007648 4.0e-229 799.3 1175 45.5
Ah.05g167110 Amaranthus hybridus HOM05D001879 ORTHO05D007957 4.2e-226 789.3 1102 47.5
MD08G1086000 Malus domestica HOM05D001879 ORTHO05D007648 2.7e-225 786.6 1168 46.3
Hund24034 Selenicereus undatus HOM05D001879 ORTHO05D007648 7.4e-223 778.5 1066 48.9
Atru.chr13.820 Acer truncatum HOM05D001879 ORTHO05D007648 4.8e-222 775.8 1170 44.5
Haze_22324 Corylus avellana HOM05D001879 ORTHO05D007648 2.4e-221 773.5 1163 44.3
Cfa013681 Carpinus fangiana HOM05D001879 ORTHO05D007648 1.5e-220 770.8 1303 43.5
Thecc.08G090000 Theobroma cacao HOM05D001879 ORTHO05D007648 4.6e-217 759.2 1119 45.6
QL12p037902 Quercus lobata HOM05D001879 ORTHO05D007648 1.0e-216 758.1 1299 45.4
Ciclev10003334m.g Citrus clementina HOM05D001879 ORTHO05D007648 1.8e-216 757.3 1151 44.5
FAN20G0949 Fragaria x ananassa HOM05D001879 ORTHO05D007648 5.7e-215 752.3 1166 44.7
Lj4A759T48 Lonicera japonica HOM05D001879 ORTHO05D007648 6.9e-213 745.3 1260 43.0
FAN27G0954 Fragaria x ananassa HOM05D001879 ORTHO05D007648 3.4e-212 743.0 1172 43.3
GSVIVG01009356001 Vitis vinifera HOM05D001879 ORTHO05D007648 2.2e-211 740.3 1184 43.8
FAN15G3244 Fragaria x ananassa HOM05D001879 ORTHO05D007648 9.3e-210 734.9 1208 42.7
FAN24G0874 Fragaria x ananassa HOM05D001879 ORTHO05D007648 1.3e-208 731.1 1221 41.5
AUR62037434 Chenopodium quinoa HOM05D001879 ORTHO05D007648 3.9e-208 729.6 1058 43.1
TAR633G2582 Trochodendron aralioides HOM05D001879 ORTHO05D007648 1.9e-207 727.2 1320 39.9
Gohir.D05G212700 Gossypium hirsutum HOM05D001879 ORTHO05D007648 1.4e-205 721.1 1173 44.8
Gorai.009G219200 Gossypium raimondii HOM05D001879 ORTHO05D007648 1.8e-205 720.7 1116 44.5
Rhsim07G0220800 Rhododendron simsii HOM05D001879 ORTHO05D007648 6.9e-205 718.8 1141 43.8
Nn5g30557 Nelumbo nucifera HOM05D001879 ORTHO05D007648 4.5e-204 716.1 1322 38.8
Manes.05G181200 Manihot esculenta HOM05D001879 ORTHO05D007648 2.9e-203 713.4 1288 41.4
Gohir.A05G209500 Gossypium hirsutum HOM05D001879 ORTHO05D007648 8.5e-203 711.8 1117 43.8
COL.COLO4_28516 Corchorus olitorius HOM05D001879 ORTHO05D007957 6.1e-201 705.7 1164 43.7
Cc10_g05690 Coffea canephora HOM05D001879 ORTHO05D007648 2.2e-198 697.2 1215 42.8
CANSAT25G1585 Cannabis sativa HOM05D001879 ORTHO05D007648 4.7e-193 679.5 1289 39.4
Potri.014G017000 Populus trichocarpa HOM05D001879 ORTHO05D007648 2.6e-191 673.7 1277 41.0
Sabra14G0010800 Salix brachista HOM05D001879 ORTHO05D007648 3.7e-190 669.8 1276 39.3
TWI56G1003 Tripterygium wilfordii HOM05D001879 ORTHO05D007648 1.2e-188 664.8 1284 40.0
CiPaw.07G175900 Carya illinoinensis HOM05D001879 ORTHO05D007648 2.6e-188 663.7 1217 40.8
DCAR_008854 Daucus carota HOM05D001879 ORTHO05D007648 1.7e-182 644.4 1260 38.7
Nitab4.5_0000164g0150 Nicotiana tabacum HOM05D001879 ORTHO05D007648 1.4e-181 641.3 1329 37.3
RcHm_v2.0_Chr6g0309441 Rosa chinensis HOM05D001879 ORTHO05D007648 1.5e-178 631.3 962 41.7
Glyma.17G235900 Glycine max HOM05D001879 ORTHO05D007648 1.9e-178 630.9 1308 39.1
Glyma.14G088600 Glycine max HOM05D001879 ORTHO05D007648 7.5e-175 619.0 1292 38.7
Sopen04g031540 Solanum pennellii HOM05D001879 ORTHO05D007648 1.7e-174 617.8 1275 36.6
MELO3C016811.2 Cucumis melo HOM05D001879 ORTHO05D007648 2.9e-171 607.1 1236 39.3
VMungo0647G0280 Vigna mungo HOM05D001879 ORTHO05D007648 6.5e-171 605.9 1305 38.4
Medtr1g018350 Medicago truncatula HOM05D001879 ORTHO05D007648 8.5e-171 605.5 1282 38.2
PGR031G1956 Punica granatum HOM05D001879 ORTHO05D007957 5.2e-168 596.3 1249 40.0
Lj5g0015061 Lotus japonicus HOM05D001879 ORTHO05D007648 2.8e-166 590.5 1295 38.1
Nitab4.5_0003803g0020 Nicotiana tabacum HOM05D001879 ORTHO05D007648 2.8e-166 590.5 1329 37.5
CsaV3_4G034990 Cucumis sativus L. HOM05D001879 ORTHO05D007648 1.4e-165 588.2 1308 40.1
SalBow7G0276 Salvia bowleyana HOM05D001879 ORTHO05D007648 1.8e-165 587.8 1239 37.3
Sed0027780 Sechium edule HOM05D001879 ORTHO05D007648 5.4e-165 586.3 1250 38.7
ClCG05G020550 Citrullus lanatus HOM05D001879 ORTHO05D007648 1.6e-164 584.7 1301 37.7
CSS0015613 Camellia sinensis var. sinensis HOM05D001879 ORTHO05D007648 4.5e-164 583.2 811 44.9
TPR.G3779 Trifolium pratense HOM05D001879 ORTHO05D007648 2.3e-163 580.9 1262 36.8
Phvul.001G026900 Phaseolus vulgaris HOM05D001879 ORTHO05D007648 1.9e-162 577.8 1304 36.7
arahy.Tifrunner.gnm1.ann1.6NC3R4 Arachis hypogaea HOM05D001879 ORTHO05D007648 2.6e-159 567.4 1295 38.7
arahy.Tifrunner.gnm1.ann1.0QZG7W Arachis hypogaea HOM05D001879 ORTHO05D007648 3.7e-158 563.5 1321 38.2
PSO017G6116 Papaver somniferum HOM05D001879 ORTHO05D007648 8.6e-155 552.4 1196 37.0
Lalb_Chr24g0399421 Lupinus albus HOM05D001879 ORTHO05D007648 1.1e-154 552.0 1294 36.2
FvH4_2g33220 Fragaria vesca HOM05D001879 ORTHO05D007648 1.5e-154 551.6 894 40.8
Oeu022102.3 Olea europaea HOM05D001879 ORTHO05D007648 2.5e-154 550.8 1253 38.5
Psat6g016280 Pisum sativum HOM05D001879 ORTHO05D007648 3.3e-154 550.4 1265 37.2
Aqoxy5G00884 Aquilegia oxysepala HOM05D001879 ORTHO05D007648 7.3e-154 549.3 1172 37.5
SGA_v2.0_scaffold238G43965 Striga asiatica HOM05D001879 ORTHO05D007648 1.6e-153 548.1 1196 37.5
ECA247G3074 Erigeron canadensis HOM05D001879 ORTHO05D007648 1.4e-152 545.0 1091 36.5
MSTRG.1026 Avicennia marina HOM05D001879 ORTHO05D007648 3.1e-152 543.9 1297 36.5
Peaxi162Scf00081g01617 Petunia axillaris HOM05D001879 ORTHO05D007648 8.9e-152 542.3 1229 36.3
HPP92_019611 Vanilla planifolia HOM05D001879 ORTHO05D007648 5.4e-149 533.1 1189 36.8
Eucgr.F02258 Eucalyptus grandis HOM05D001879 ORTHO05D007648 2.5e-146 524.2 1145 36.9
Thhalv10006638m.g Eutrema salsugineum HOM05D001879 ORTHO05D007648 7.3e-146 522.7 1158 36.5
ATR0208G021 Amborella trichopoda HOM05D001879 ORTHO05D007648 1.4e-144 518.5 1151 36.4
BolC5t31365H Brassica oleracea HOM05D001879 ORTHO05D007648 2.2e-142 511.1 1166 36.4
Sp1g23980 Schrenkiella parvula HOM05D001879 ORTHO05D007648 8.3e-142 509.2 1171 37.2
Solyc04g077940.4 Solanum lycopersicum HOM05D001879 ORTHO05D007648 4.1e-141 506.9 1231 34.4
Aa31sc113G20 Aethionema arabicum HOM05D001879 ORTHO05D007648 6.0e-140 503.1 1110 35.9
BraA09t39344Z Brassica rapa HOM05D001879 ORTHO05D007648 8.6e-139 499.2 1161 37.6
AL1G41280 Arabidopsis lyrata HOM05D001879 ORTHO05D007648 2.5e-138 497.7 1162 36.6
AT1G27750 Arabidopsis thaliana HOM05D001879 ORTHO05D007648 2.5e-138 497.7 1166 35.0
A09p38350 Brassica napus HOM05D001879 ORTHO05D007648 8.1e-137 492.7 1161 37.3
C05p26440 Brassica napus HOM05D001879 ORTHO05D007648 1.1e-136 492.3 1161 35.7
CDE06G0223 Ceratophyllum demersum HOM05D001879 ORTHO05D007648 1.7e-134 485.0 1304 33.4
HanXRQChr08g0220641 Helianthus annuus HOM05D001879 ORTHO05D007648 3.2e-133 480.7 1104 35.7
Carub.0001s2626 Capsella rubella HOM05D001879 ORTHO05D007648 2.1e-132 478.0 1153 37.5
Lsat_1_v5_gn_1_24340 Lactuca sativa HOM05D001879 ORTHO05D007648 1.9e-125 454.9 1150 34.6
Cpa.g.sc142.15 Carica papaya HOM05D001879 ORTHO05D007648 1.7e-118 431.8 676 40.2
Lalb_Chr22g0355581 Lupinus albus HOM05D001879 ORTHO05D007648 1.1e-109 402.5 761 36.7
BcaC05g26775 Brassica carinata HOM05D001879 ORTHO05D007648 1.8e-107 395.2 1166 33.2
Zm00001eb152180 Zea mays HOM05D001879 ORTHO05D007648 9.6e-98 362.8 1077 30.6
SEGI_08589 Sequoiadendron giganteum HOM05D001879 ORTHO05D007648 5.7e-90 337.0 1422 28.3
TAR381G0870 Trochodendron aralioides HOM05D001879 ORTHO05D007648 1.6e-89 335.5 590 38.8
CARHR027260 Cardamine hirsuta HOM05D001879 ORTHO05D007648 2.6e-82 311.6 814 35.9
SHI08393 Sapria himalayana HOM05D001879 ORTHO05D007648 2.0e-63 248.8 236 56.4
Os01g0765200 Oryza sativa ssp. japonica HOM05D001879 ORTHO05D007648 5.0e-62 244.2 361 42.7
Ca_13223_v3 Cicer arietinum L. HOM05D001879 ORTHO05D007648 8.0e-60 236.9 679 35.5
Ca_13228_v3 Cicer arietinum L. HOM05D001879 ORTHO05D007648 3.4e-58 231.5 346 44.8
Os01g0765300 Oryza sativa ssp. japonica HOM05D001879 ORTHO05D007648 5.4e-56 224.2 585 35.6
Ca_14462_v3 Cicer arietinum L. HOM05D001879 ORTHO05D000002 4.5e-55 221.1 281 48.8
Cpa.g.sc142.16 Carica papaya HOM05D001879 ORTHO05D007648 6.5e-54 217.2 330 48.2
AagrBONN_evm.TU.Sc2ySwM_117.1790 Anthoceros agrestis HOM05D001879 ORTHO05D007648 1.8e-48 199.1 706 27.8
SHI08394 Sapria himalayana HOM05D001879 ORTHO05D007648 3.5e-47 194.9 580 35.2
Pp3c24_10810 Physcomitrium patens HOM05D001879 ORTHO05D007648 7.5e-42 177.2 834 25.2
Ca_22944_v3 Cicer arietinum L. HOM05D001879 ORTHO05D007648 8.9e-35 153.7 417 31.7
SMO143G0029 Selaginella moellendorffii HOM05D001879 ORTHO05D007648 6.0e-31 141.0 696 25.3
vmacro22059 Vaccinium macrocarpon HOM05D001879 ORTHO05D007648 6.6e-30 137.5 120 55.8
Mapoly0006s0231 Marchantia polymorpha HOM05D001879 ORTHO05D007648 6.2e-28 131.0 573 25.5
Ca_20160_v3 Cicer arietinum L. HOM05D001879 ORTHO05D009627 4.3e-21 108.2 199 35.2
CBR_g6612 Chara braunii HOM05D001879 ORTHO05D007648 1.2e-20 106.7 856 22.5
Ca_09349_v3 Cicer arietinum L. HOM05D000083 ORTHO05D002968 1.6e-15 89.7 213 32.9
CBR_g6294 Chara braunii HOM05D001879 ORTHO05D007648 3.0e-14 85.5 186 33.9
C07p17470 Brassica napus HOM05D001879 ORTHO05D007648 2.5e-13 82.4 81 48.1
BolC7t42252H Brassica oleracea HOM05D001879 ORTHO05D007648 3.3e-13 82.0 81 46.9
Ca_31153_v3 Cicer arietinum L. HOM05D001879 ORTHO05D009627 2.1e-12 79.3 128 37.5
PGSC0003DMG400024244 Solanum tuberosum HOM05D001879 ORTHO05D007648 6.2e-12 77.8 75 44.0
PGSC0003DMG400024243 Solanum tuberosum HOM05D001879 ORTHO05D007648 2.4e-11 75.9 75 42.7
Sopen05g013150 Solanum pennellii HOM05D001879 ORTHO05D007648 3.1e-11 75.5 74 45.9
RcHm_v2.0_Chr6g0309451 Rosa chinensis HOM05D001879 ORTHO05D007648 9.9e-10 70.5 56 57.1
AL4G19860 Arabidopsis lyrata HOM05D001879 ORTHO05D007648 3.8e-09 68.6 96 43.8
BolC7t42255H Brassica oleracea HOM05D001879 ORTHO05D007648 1.1e-08 67.0 117 38.5
Lalb_Chr22g0355591 Lupinus albus HOM05D001879 ORTHO05D007648 9.3e-08 63.9 97 38.1
Haze_22323 Corylus avellana HOM05D001879 ORTHO05D007648 1.3e-06 60.1 121 57.9
Psat1g176800 Pisum sativum HOM05D004029 ORTHO05D004613 1.3e-06 60.1 69 40.6


User provided reference genes

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