Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc14g0005190 Simmondsia chinensis HOM05D006442 ORTHO05D007980 7.7e-76 287.0 134 100.0
Eucgr.G03402 Eucalyptus grandis HOM05D006442 ORTHO05D007980 1.0e-59 233.4 130 77.7
PGR042G3140 Punica granatum HOM05D006442 ORTHO05D007980 1.3e-59 233.0 130 80.0
Glyma.15G271700 Glycine max HOM05D006442 ORTHO05D007980 1.7e-59 232.6 131 78.6
Dinv43911 Davidia involucrata HOM05D006442 ORTHO05D007980 3.8e-59 231.5 130 78.5
Glyma.08G151500 Glycine max HOM05D006442 ORTHO05D007980 8.5e-59 230.3 131 77.1
VMungo1080G0583 Vigna mungo HOM05D006442 ORTHO05D007980 1.1e-58 229.9 131 77.9
Cc02_g27340 Coffea canephora HOM05D006442 ORTHO05D007980 2.5e-58 228.8 130 75.4
Cc02_g27370 Coffea canephora HOM05D006442 ORTHO05D007980 3.2e-58 228.4 130 75.4
Ah.16g101020 Amaranthus hybridus HOM05D006442 ORTHO05D007980 4.2e-58 228.0 132 76.5
TPR.G12183 Trifolium pratense HOM05D006442 ORTHO05D007980 4.2e-58 228.0 131 76.3
Prupe.2G007200 Prunus persica HOM05D006442 ORTHO05D007980 5.5e-58 227.6 130 76.9
arahy.Tifrunner.gnm1.ann1.9R1925 Arachis hypogaea HOM05D006442 ORTHO05D007980 1.2e-57 226.5 131 75.6
arahy.Tifrunner.gnm1.ann1.A55RA3 Arachis hypogaea HOM05D006442 ORTHO05D007980 1.2e-57 226.5 131 75.6
CSS0016496 Camellia sinensis var. sinensis HOM05D006442 ORTHO05D007980 1.2e-57 226.5 130 76.9
Cfa010728 Carpinus fangiana HOM05D006442 ORTHO05D007980 2.1e-57 225.7 130 76.2
Medtr3g027090 Medicago truncatula HOM05D006442 ORTHO05D007980 2.1e-57 225.7 131 74.8
CSS0031684 Camellia sinensis var. sinensis HOM05D006442 ORTHO05D007980 3.6e-57 224.9 130 76.2
Haze_03245 Corylus avellana HOM05D006442 ORTHO05D007980 3.6e-57 224.9 130 75.4
Peaxi162Scf00045g00327 Petunia axillaris HOM05D006442 ORTHO05D007980 3.6e-57 224.9 129 73.6
TAR633G2790 Trochodendron aralioides HOM05D006442 ORTHO05D007980 4.7e-57 224.6 129 76.0
MD07G1004900 Malus domestica HOM05D006442 ORTHO05D007980 6.1e-57 224.2 130 76.2
Nn7g36056 Nelumbo nucifera HOM05D006442 ORTHO05D007980 6.1e-57 224.2 130 75.4
VMungo1080G0430 Vigna mungo HOM05D006442 ORTHO05D007980 6.1e-57 224.2 129 77.5
Lj3g0007274 Lotus japonicus HOM05D006442 ORTHO05D007980 8.0e-57 223.8 131 74.8
Rhsim07G0053100 Rhododendron simsii HOM05D006442 ORTHO05D007980 8.0e-57 223.8 129 76.7
Oeu064276.1 Olea europaea HOM05D006442 ORTHO05D007980 2.3e-56 222.2 130 74.6
Hma1.2p1_0010F.1_g007050 Hydrangea macrophylla HOM05D006442 ORTHO05D007980 4.0e-56 221.5 130 75.4
PGSC0003DMG400026375 Solanum tuberosum HOM05D006442 ORTHO05D007980 4.0e-56 221.5 132 72.0
Phvul.005G037200 Phaseolus vulgaris HOM05D006442 ORTHO05D007980 6.8e-56 220.7 131 74.0
Atru.chr11.2670 Acer truncatum HOM05D006442 ORTHO05D007980 8.8e-56 220.3 130 73.8
AUR62009476 Chenopodium quinoa HOM05D006442 ORTHO05D007980 1.2e-55 219.9 132 73.5
FvH4_7g00510 Fragaria vesca HOM05D006442 ORTHO05D007980 1.2e-55 219.9 130 73.1
FAN06G2479 Fragaria x ananassa HOM05D006442 ORTHO05D007980 1.2e-55 219.9 130 73.1
FAN10G1890 Fragaria x ananassa HOM05D006442 ORTHO05D007980 1.2e-55 219.9 130 73.1
GSVIVG01032037001 Vitis vinifera HOM05D006442 ORTHO05D007980 1.2e-55 219.9 130 73.8
Lsat_1_v5_gn_8_7620 Lactuca sativa HOM05D006442 ORTHO05D007980 1.5e-55 219.5 130 75.4
Actinidia21568 Actinidia chinensis HOM05D006442 ORTHO05D007980 2.0e-55 219.2 129 74.4
Duzib133G0004 Durio zibethinus HOM05D006442 ORTHO05D007980 2.0e-55 219.2 132 73.5
CAN.G1110.8 Capsicum annuum HOM05D006442 ORTHO05D007980 2.6e-55 218.8 129 72.9
CiPaw.12G060500 Carya illinoinensis HOM05D006442 ORTHO05D007980 2.6e-55 218.8 132 72.0
FAN03G1462 Fragaria x ananassa HOM05D006442 ORTHO05D007980 2.6e-55 218.8 130 72.3
Potri.001G225500 Populus trichocarpa HOM05D006442 ORTHO05D007980 2.6e-55 218.8 130 74.6
Solyc10g037980.2 Solanum lycopersicum HOM05D006442 ORTHO05D007980 3.4e-55 218.4 132 70.5
Manes.10G148300 Manihot esculenta HOM05D006442 ORTHO05D007980 4.4e-55 218.0 130 72.3
Actinidia20688 Actinidia chinensis HOM05D006442 ORTHO05D007980 5.7e-55 217.6 129 75.2
MSTRG.28085 Avicennia marina HOM05D006442 ORTHO05D007980 5.7e-55 217.6 130 73.8
AUR62023154 Chenopodium quinoa HOM05D006442 ORTHO05D007980 9.8e-55 216.9 129 73.6
Nn2g15582 Nelumbo nucifera HOM05D006442 ORTHO05D007980 9.8e-55 216.9 127 73.2
Sopen10g011600 Solanum pennellii HOM05D006442 ORTHO05D007980 9.8e-55 216.9 132 70.5
Nitab4.5_0002012g0020 Nicotiana tabacum HOM05D006442 ORTHO05D007980 1.7e-54 216.1 129 72.1
SalBow5G2051 Salvia bowleyana HOM05D006442 ORTHO05D007980 1.7e-54 216.1 131 72.5
TWI09G1159 Tripterygium wilfordii HOM05D006442 ORTHO05D007980 2.2e-54 215.7 130 74.6
RcHm_v2.0_Chr1g0314301 Rosa chinensis HOM05D006442 ORTHO05D007980 2.8e-54 215.3 130 71.5
Aqoxy1G00188 Aquilegia oxysepala HOM05D006442 ORTHO05D007980 4.8e-54 214.5 129 74.4
Lalb_Chr25g0283271 Lupinus albus HOM05D006442 ORTHO05D007980 8.3e-54 213.8 131 72.5
Ciclev10033058m.g Citrus clementina HOM05D006442 ORTHO05D007980 1.1e-53 213.4 130 72.3
ECA248G1263 Erigeron canadensis HOM05D006442 ORTHO05D007980 1.1e-53 213.4 130 72.3
Sed0019847 Sechium edule HOM05D006442 ORTHO05D007980 1.1e-53 213.4 131 71.8
Phvul.005G038700 Phaseolus vulgaris HOM05D006442 ORTHO05D007980 1.4e-53 213.0 129 72.9
Gohir.D09G099100 Gossypium hirsutum HOM05D006442 ORTHO05D007980 2.4e-53 212.2 132 72.0
Gorai.006G116100 Gossypium raimondii HOM05D006442 ORTHO05D007980 2.4e-53 212.2 132 72.0
Oeu013593.2 Olea europaea HOM05D006442 ORTHO05D007980 2.4e-53 212.2 130 70.8
EL10Ac2g04436 Beta vulgaris HOM05D006442 ORTHO05D007980 4.1e-53 211.5 132 70.5
Gohir.A09G099700 Gossypium hirsutum HOM05D006442 ORTHO05D007980 9.1e-53 210.3 132 71.2
Psat5g207000 Pisum sativum HOM05D006442 ORTHO05D007980 9.1e-53 210.3 131 69.5
Sabra16G0134100 Salix brachista HOM05D006442 ORTHO05D007980 9.1e-53 210.3 130 72.3
DCAR_006304 Daucus carota HOM05D006442 ORTHO05D007980 2.0e-52 209.1 130 72.3
Migut.N01489 Erythranthe guttata HOM05D006442 ORTHO05D007980 2.7e-52 208.8 130 70.0
HanXRQChr01g0018511 Helianthus annuus HOM05D006442 ORTHO05D007980 2.7e-52 208.8 130 71.5
QL04p004786 Quercus lobata HOM05D006442 ORTHO05D007980 3.5e-52 208.4 173 59.0
CANSAT01G1452 Cannabis sativa HOM05D006442 ORTHO05D007980 1.7e-51 206.1 130 71.5
CDE07G0477 Ceratophyllum demersum HOM05D006442 ORTHO05D007980 1.7e-51 206.1 132 64.4
Thecc.01G414800 Theobroma cacao HOM05D006442 ORTHO05D007980 1.7e-51 206.1 132 73.5
SGA_v2.0_scaffold10G05439 Striga asiatica HOM05D006442 ORTHO05D007980 2.9e-51 205.3 130 68.5
SGA_v2.0_scaffold4G02243 Striga asiatica HOM05D006442 ORTHO05D007980 5.0e-51 204.5 130 69.2
COL.COLO4_23906 Corchorus olitorius HOM05D006442 ORTHO05D007980 1.6e-49 199.5 134 68.7
CAN.G1076.12 Capsicum annuum HOM05D006442 ORTHO05D007980 2.1e-49 199.1 129 68.2
AUR62009477 Chenopodium quinoa HOM05D006442 ORTHO05D007980 4.7e-49 198.0 132 64.4
Atru.chr11.2672 Acer truncatum HOM05D006442 ORTHO05D007980 1.5e-47 193.0 114 73.7
PSO339G0425 Papaver somniferum HOM05D006442 ORTHO05D007980 1.5e-47 193.0 130 66.9
AUR62023155 Chenopodium quinoa HOM05D006442 ORTHO05D007980 2.0e-47 192.6 131 64.1
unitig_22.g5766 Utricularia gibba HOM05D006442 ORTHO05D007980 3.4e-47 191.8 130 63.1
PSO384G2221 Papaver somniferum HOM05D006442 ORTHO05D007980 4.4e-47 191.4 130 66.9
THA.LOC104823024 Tarenaya hassleriana HOM05D006442 ORTHO05D007980 2.2e-46 189.1 130 64.6
Ca_27853_v3 Cicer arietinum L. HOM05D006442 ORTHO05D007980 7.7e-44 180.6 225 42.2
A06p48230 Brassica napus HOM05D006442 ORTHO05D007980 3.8e-43 178.3 135 58.5
BraA06t27691Z Brassica rapa HOM05D006442 ORTHO05D007980 3.8e-43 178.3 135 58.5
BcaC06g31744 Brassica carinata HOM05D006442 ORTHO05D007980 3.3e-42 175.3 135 57.8
Sp2g07550 Schrenkiella parvula HOM05D006442 ORTHO05D007980 9.5e-42 173.7 134 57.5
Glyma.08G152300 Glycine max HOM05D006442 ORTHO05D007980 1.6e-41 172.9 131 60.3
AL8G18110 Arabidopsis lyrata HOM05D006442 ORTHO05D007980 2.1e-41 172.6 135 57.0
BcaC02g10802 Brassica carinata HOM05D006442 ORTHO05D007980 2.1e-41 172.6 135 56.3
C04p24990 Brassica napus HOM05D006442 ORTHO05D007980 2.1e-41 172.6 135 56.3
BolC4t23999H Brassica oleracea HOM05D006442 ORTHO05D007980 2.1e-41 172.6 135 56.3
Thhalv10003289m.g Eutrema salsugineum HOM05D006442 ORTHO05D007980 1.0e-40 170.2 133 57.9
SEGI_10267 Sequoiadendron giganteum HOM05D006442 ORTHO05D007980 1.8e-40 169.5 124 57.3
HPP92_018950 Vanilla planifolia HOM05D006442 ORTHO05D007980 3.0e-40 168.7 126 61.9
AT5G42850 Arabidopsis thaliana HOM05D006442 ORTHO05D007980 5.2e-40 167.9 135 56.3
CARHR181310 Cardamine hirsuta HOM05D006442 ORTHO05D007980 5.2e-40 167.9 135 55.6
Carub.0008s0607 Capsella rubella HOM05D006442 ORTHO05D007980 3.4e-39 165.2 135 54.8
ATR0605G011 Amborella trichopoda HOM05D006442 ORTHO05D007980 4.4e-39 164.9 129 54.3
vmacro13638 Vaccinium macrocarpon HOM05D006442 ORTHO05D007980 6.4e-38 161.0 153 52.9
Aa31LG8G5740 Aethionema arabicum HOM05D000097 ORTHO05D000041 1.4e-37 159.8 132 55.3
MBI01_g15755_MAGBIO Magnolia biondii HOM05D006442 ORTHO05D007980 1.8e-37 159.5 82 82.9
Zm00001eb381670 Zea mays HOM05D006442 ORTHO05D007980 4.1e-37 158.3 133 55.6
AagrBONN_evm.TU.Sc2ySwM_117.1593 Anthoceros agrestis HOM05D006442 ORTHO05D007980 1.2e-36 156.8 129 57.4
CsaV3_3G032370 Cucumis sativus L. HOM05D006442 ORTHO05D007980 1.7e-35 152.9 82 80.5
Mapoly0028s0130 Marchantia polymorpha HOM05D006442 ORTHO05D007980 2.9e-35 152.1 131 54.2
Os06g0320000 Oryza sativa ssp. japonica HOM05D006442 ORTHO05D007980 2.9e-35 152.1 135 51.9
SMO244G0064 Selaginella moellendorffii HOM05D006442 ORTHO05D007980 5.6e-34 147.9 129 51.9
Pp3c1_3150 Physcomitrium patens HOM05D006442 ORTHO05D007980 8.0e-33 144.1 132 50.8
CAN.G37.7 Capsicum annuum HOM05D006442 ORTHO05D007980 1.0e-32 143.7 102 57.8
Nitab4.5_0004606g0020 Nicotiana tabacum HOM05D006442 ORTHO05D007980 1.4e-32 143.3 79 77.2
ClCG10G012580 Citrullus lanatus HOM05D002156 ORTHO05D002328 2.5e-26 122.5 75 70.7
CBR_g40140 Chara braunii HOM05D006442 ORTHO05D007980 2.0e-23 112.8 120 50.8
MD02G1317000 Malus domestica HOM05D006442 ORTHO05D007980 1.7e-22 109.8 64 70.3
CAN.G290.22 Capsicum annuum HOM05D006442 ORTHO05D007980 1.6e-17 93.2 55 65.5
MD01G1062200 Malus domestica HOM05D006442 ORTHO05D007980 2.1e-17 92.8 72 62.5
Aa31LG8G5750 Aethionema arabicum HOM05D006442 ORTHO05D007980 8.4e-14 80.9 124 34.7
MELO3C023952.2 Cucumis melo HOM05D002156 ORTHO05D002328 8.6e-11 70.9 48 62.5
CsaV3_3G032380 Cucumis sativus L. HOM05D002156 ORTHO05D002328 1.1e-10 70.5 48 62.5
AL8G12830 Arabidopsis lyrata HOM05D006442 ORTHO05D007980 7.3e-10 67.8 50 60.0
Cre07.g315100 Chlamydomonas reinhardtii HOM05D006442 ORTHO05D007980 1.2e-09 67.0 90 40.0
AL5G40550 Arabidopsis lyrata HOM05D006442 ORTHO05D007980 8.1e-09 64.3 44 63.6
MD00G1052400 Malus domestica HOM05D006442 ORTHO05D007980 5.2e-08 61.6 42 64.3


User provided reference genes

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