Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc14g0003050 Simmondsia chinensis HOM05D006474 ORTHO05D007994 2.4e-261 904.8 422 100.0
EL10Ac8g19287 Beta vulgaris HOM05D006474 ORTHO05D007994 1.6e-175 619.8 386 70.7
TAR383G1087 Trochodendron aralioides HOM05D006474 ORTHO05D007994 3.5e-175 618.6 374 74.1
AUR62027431 Chenopodium quinoa HOM05D006474 ORTHO05D007994 1.3e-174 616.7 383 70.2
RcHm_v2.0_Chr4g0398871 Rosa chinensis HOM05D006474 ORTHO05D007994 1.3e-174 616.7 408 68.9
Aqoxy7G02891 Aquilegia oxysepala HOM05D006474 ORTHO05D007994 9.5e-173 610.5 362 74.3
GSVIVG01029282001 Vitis vinifera HOM05D006474 ORTHO05D007994 9.5e-173 610.5 365 74.0
Actinidia38505 Actinidia chinensis HOM05D006474 ORTHO05D007994 8.1e-172 607.4 368 73.6
Lalb_Chr07g0180731 Lupinus albus HOM05D006474 ORTHO05D007994 1.8e-171 606.3 407 68.3
Lj4g0020492 Lotus japonicus HOM05D006474 ORTHO05D007994 3.1e-171 605.5 409 66.3
CiPaw.07G199100 Carya illinoinensis HOM05D006474 ORTHO05D007994 6.8e-171 604.4 371 73.0
Cc01_g11810 Coffea canephora HOM05D006474 ORTHO05D007994 6.8e-171 604.4 391 69.8
Glyma.17G057700 Glycine max HOM05D006474 ORTHO05D007994 6.8e-171 604.4 414 67.1
Ca_21263_v3 Cicer arietinum L. HOM05D006474 ORTHO05D007994 8.9e-171 604.0 411 66.4
QL02p064597 Quercus lobata HOM05D006474 ORTHO05D007994 1.5e-170 603.2 365 74.8
Sabra06G0054200 Salix brachista HOM05D006474 ORTHO05D007994 9.9e-170 600.5 366 72.7
FAN07G0584 Fragaria x ananassa HOM05D006474 ORTHO05D007994 1.3e-169 600.1 405 68.4
Potri.006G072800 Populus trichocarpa HOM05D006474 ORTHO05D007994 1.3e-169 600.1 367 73.6
DCAR_020143 Daucus carota HOM05D006474 ORTHO05D007994 2.2e-169 599.4 367 73.0
PGR142G0270 Punica granatum HOM05D006474 ORTHO05D007994 2.2e-169 599.4 408 67.9
Cpa.g.sc115.63 Carica papaya HOM05D006474 ORTHO05D007994 2.9e-169 599.0 427 65.3
HanXRQChr06g0181391 Helianthus annuus HOM05D006474 ORTHO05D007994 2.9e-169 599.0 382 69.9
MD13G1241100 Malus domestica HOM05D006474 ORTHO05D007994 1.9e-168 596.3 362 72.4
vmacro20800 Vaccinium macrocarpon HOM05D006474 ORTHO05D007994 3.2e-168 595.5 397 68.8
Nitab4.5_0000028g0400 Nicotiana tabacum HOM05D006474 ORTHO05D007994 4.1e-168 595.1 381 71.1
arahy.Tifrunner.gnm1.ann1.HVXZ0P Arachis hypogaea HOM05D006474 ORTHO05D007994 5.4e-168 594.7 365 71.8
FvH4_4g06930 Fragaria vesca HOM05D006474 ORTHO05D007994 1.6e-167 593.2 405 67.9
Nitab4.5_0004916g0010 Nicotiana tabacum HOM05D006474 ORTHO05D007994 1.6e-167 593.2 366 72.4
Manes.06G017600 Manihot esculenta HOM05D006474 ORTHO05D007994 2.7e-167 592.4 367 71.1
FAN17G1111 Fragaria x ananassa HOM05D006474 ORTHO05D007994 1.3e-166 590.1 405 67.4
PGSC0003DMG400019888 Solanum tuberosum HOM05D006474 ORTHO05D007994 2.3e-166 589.3 375 70.9
FAN12G2823 Fragaria x ananassa HOM05D006474 ORTHO05D007994 3.0e-166 589.0 405 67.4
Sopen07g004200 Solanum pennellii HOM05D006474 ORTHO05D007994 6.6e-166 587.8 392 68.6
ECA236G3875 Erigeron canadensis HOM05D006474 ORTHO05D007994 1.9e-165 586.3 372 69.1
TWI32G0724 Tripterygium wilfordii HOM05D006474 ORTHO05D007994 1.9e-165 586.3 365 71.5
Solyc07g008310.3 Solanum lycopersicum HOM05D006474 ORTHO05D007994 7.3e-165 584.3 392 68.1
MELO3C009992.2 Cucumis melo HOM05D006474 ORTHO05D007994 1.2e-164 583.6 393 66.9
Eucgr.C00087 Eucalyptus grandis HOM05D006474 ORTHO05D007994 2.1e-164 582.8 427 62.1
Thecc.04G204000 Theobroma cacao HOM05D006474 ORTHO05D007994 2.1e-164 582.8 366 71.3
COL.COLO4_37571 Corchorus olitorius HOM05D006474 ORTHO05D007994 2.8e-164 582.4 364 71.7
ClCG03G011950 Citrullus lanatus HOM05D006474 ORTHO05D007994 4.7e-164 581.6 402 65.9
MBI14_g10727_MAGBIO Magnolia biondii HOM05D006474 ORTHO05D007994 8.1e-164 580.9 421 63.4
Peaxi162Scf00046g00533 Petunia axillaris HOM05D006474 ORTHO05D007994 1.1e-163 580.5 399 68.4
CsaV3_1G043980 Cucumis sativus L. HOM05D006474 ORTHO05D007994 3.1e-163 578.9 402 66.4
MSTRG.5932 Avicennia marina HOM05D006474 ORTHO05D007994 4.0e-163 578.6 404 65.3
Medtr4g127130 Medicago truncatula HOM05D006474 ORTHO05D007994 5.2e-163 578.2 408 63.7
Migut.J00779 Erythranthe guttata HOM05D006474 ORTHO05D007994 6.9e-163 577.8 367 70.8
Haze_22046 Corylus avellana HOM05D006474 ORTHO05D007994 9.0e-163 577.4 436 63.3
ATR0580G130 Amborella trichopoda HOM05D006474 ORTHO05D007994 4.4e-162 575.1 403 66.3
TPR.G5392 Trifolium pratense HOM05D006474 ORTHO05D007994 1.3e-161 573.5 410 63.7
PSO063G0500 Papaver somniferum HOM05D006474 ORTHO05D007994 2.9e-161 572.4 388 67.5
Gohir.A05G408600 Gossypium hirsutum HOM05D006474 ORTHO05D007994 3.8e-161 572.0 364 70.3
Ciclev10008481m.g Citrus clementina HOM05D006474 ORTHO05D007994 1.1e-160 570.5 416 63.9
Gorai.012G008200 Gossypium raimondii HOM05D006474 ORTHO05D007994 1.9e-160 569.7 409 65.3
Duzib170G0180 Durio zibethinus HOM05D006474 ORTHO05D007994 4.2e-160 568.5 403 65.0
arahy.Tifrunner.gnm1.ann1.Z6GGIF Arachis hypogaea HOM05D006474 ORTHO05D007994 2.7e-159 565.8 410 64.1
CDE02G2399 Ceratophyllum demersum HOM05D006474 ORTHO05D007994 6.0e-159 564.7 364 68.4
SalBow1G1087 Salvia bowleyana HOM05D006474 ORTHO05D007994 1.7e-158 563.1 366 68.6
Oeu035450.1 Olea europaea HOM05D006474 ORTHO05D007994 6.6e-158 561.2 365 69.6
Os06g0698785 Oryza sativa ssp. japonica HOM05D006474 ORTHO05D007994 1.1e-157 560.5 384 65.1
Nn8g40661 Nelumbo nucifera HOM05D006474 ORTHO05D007994 2.5e-157 559.3 344 73.3
SGA_v2.0_scaffold112G31632 Striga asiatica HOM05D006474 ORTHO05D007994 3.3e-157 558.9 383 66.3
HPP92_010297 Vanilla planifolia HOM05D006474 ORTHO05D007994 9.6e-157 557.4 363 67.5
Dinv41197 Davidia involucrata HOM05D006474 ORTHO05D007994 1.3e-156 557.0 370 68.6
Zm00001eb273050 Zea mays HOM05D006474 ORTHO05D007994 1.3e-156 557.0 377 65.5
AL7G22360 Arabidopsis lyrata HOM05D006474 ORTHO05D007994 4.0e-155 552.0 366 68.6
Prupe.1G072500 Prunus persica HOM05D006474 ORTHO05D007994 3.4e-154 548.9 363 68.3
AT4G29890 Arabidopsis thaliana HOM05D006474 ORTHO05D007994 5.8e-154 548.1 367 67.8
CARHR237790 Cardamine hirsuta HOM05D006474 ORTHO05D007994 2.2e-153 546.2 366 67.5
Thhalv10025251m.g Eutrema salsugineum HOM05D006474 ORTHO05D007994 2.9e-153 545.8 406 62.8
Aa31LG2G20660 Aethionema arabicum HOM05D006474 ORTHO05D007994 1.9e-152 543.1 368 66.8
Sed0007392 Sechium edule HOM05D006474 ORTHO05D007994 1.9e-152 543.1 364 64.8
Solyc07g008300.3 Solanum lycopersicum HOM05D006474 ORTHO05D007994 3.2e-152 542.3 417 62.6
C07p57320 Brassica napus HOM05D006474 ORTHO05D007994 4.2e-152 542.0 371 67.1
Atru.BG.24.p Acer truncatum HOM05D006474 ORTHO05D007994 2.7e-151 539.3 347 70.9
Sp7g27700 Schrenkiella parvula HOM05D006474 ORTHO05D007994 3.5e-151 538.9 367 66.8
Rhsim01G0114400 Rhododendron simsii HOM05D006474 ORTHO05D007994 7.9e-151 537.7 326 73.9
Sopen07g004190 Solanum pennellii HOM05D006474 ORTHO05D007994 1.3e-150 537.0 362 68.2
BolC7t46201H Brassica oleracea HOM05D006474 ORTHO05D007994 1.8e-150 536.6 371 66.3
Carub.0007s1076 Capsella rubella HOM05D006474 ORTHO05D007994 5.1e-150 535.0 366 65.6
Sed0005056 Sechium edule HOM05D006474 ORTHO05D007994 8.7e-150 534.3 396 63.1
A03p59310 Brassica napus HOM05D006474 ORTHO05D007994 1.9e-149 533.1 372 64.5
BraA03t14988Z Brassica rapa HOM05D006474 ORTHO05D007994 1.9e-149 533.1 372 64.5
HanXRQChr06g0181381 Helianthus annuus HOM05D006474 ORTHO05D007994 3.3e-149 532.3 365 66.0
BcaNung00499 Brassica carinata HOM05D006474 ORTHO05D007994 5.6e-149 531.6 373 66.5
Lsat_1_v5_gn_8_68301 Lactuca sativa HOM05D006474 ORTHO05D007994 1.8e-147 526.6 392 64.0
Ah.14g085320 Amaranthus hybridus HOM05D006474 ORTHO05D007994 4.0e-147 525.4 319 72.7
Migut.J00780 Erythranthe guttata HOM05D006474 ORTHO05D007994 3.4e-146 522.3 367 63.5
Gohir.D04G006800 Gossypium hirsutum HOM05D006474 ORTHO05D007994 1.9e-144 516.5 405 61.2
AUR62031264 Chenopodium quinoa HOM05D006474 ORTHO05D007994 5.5e-144 515.0 304 73.4
CANSAT54G2413 Cannabis sativa HOM05D006474 ORTHO05D007994 6.0e-143 511.5 329 69.9
Psat4g014320 Pisum sativum HOM05D006474 ORTHO05D007994 6.9e-139 498.0 360 63.6
AagrBONN_evm.TU.Sc2ySwM_117.1622 Anthoceros agrestis HOM05D006474 ORTHO05D007994 8.7e-134 481.1 396 55.3
CAN.G403.4 Capsicum annuum HOM05D006474 ORTHO05D007994 8.2e-132 474.6 317 68.8
Phvul.003G140100 Phaseolus vulgaris HOM05D006474 ORTHO05D007994 1.1e-131 474.2 290 70.7
AUR62032506 Chenopodium quinoa HOM05D006474 ORTHO05D007994 1.4e-131 473.8 387 51.9
AUR62043230 Chenopodium quinoa HOM05D006474 ORTHO05D007994 4.5e-130 468.8 387 51.2
SMO196G0177 Selaginella moellendorffii HOM05D006474 ORTHO05D007994 1.0e-129 467.6 389 55.5
Pp3c13_13580 Physcomitrium patens HOM05D006474 ORTHO05D007994 7.2e-128 461.5 370 55.9
Mapoly0089s0013 Marchantia polymorpha HOM05D006474 ORTHO05D007994 4.2e-120 435.6 394 52.0
PSO170G4238 Papaver somniferum HOM05D006474 ORTHO05D007994 1.8e-115 420.2 277 68.2
EL10Ac6g13937 Beta vulgaris HOM05D006474 ORTHO05D007994 6.5e-113 411.8 387 48.3
Cfa013469 Carpinus fangiana HOM05D006474 ORTHO05D007994 9.4e-104 381.3 278 66.2
CSS0012665 Camellia sinensis var. sinensis HOM05D006474 ORTHO05D007994 3.6e-103 379.4 225 75.6
Lju50A4G45 Lonicera japonica HOM05D006474 ORTHO05D007994 6.3e-100 368.6 258 67.8
MCO02G024 Micromonas commoda HOM05D006474 ORTHO05D007994 1.1e-91 341.3 359 48.5
Hund22985 Selenicereus undatus HOM05D006474 ORTHO05D007994 1.6e-90 337.4 394 47.5
FAN22G2051 Fragaria x ananassa HOM05D006474 ORTHO05D007994 6.1e-79 298.9 361 46.5
Lsat_1_v5_gn_9_69680 Lactuca sativa HOM05D006474 ORTHO05D007994 2.2e-76 290.4 239 59.8
Phvul.010G082000 Phaseolus vulgaris HOM05D006474 ORTHO05D007994 3.6e-63 246.5 186 59.1
Lsat_1_v5_gn_5_32380 Lactuca sativa HOM05D006474 ORTHO05D007994 1.5e-56 224.6 193 56.5
PRCOL_00004194 Prasinoderma coloniale HOM05D006474 ORTHO05D007994 1.2e-55 221.5 468 30.6
Ah.03g136670 Amaranthus hybridus HOM05D006474 ORTHO05D007994 8.1e-55 218.8 232 43.1
SEGI_01125 Sequoiadendron giganteum HOM05D006474 ORTHO05D007994 1.9e-43 181.0 129 62.0
Phvul.011G131100 Phaseolus vulgaris HOM05D006474 ORTHO05D007994 1.8e-30 137.9 102 59.8
RcHm_v2.0_Chr4g0398881 Rosa chinensis HOM05D006474 ORTHO05D007994 1.8e-25 121.3 201 34.8
Actinidia29962 Actinidia chinensis HOM05D006474 ORTHO05D007994 3.1e-22 110.5 90 57.8
Gohir.A01G088200 Gossypium hirsutum HOM05D006474 ORTHO05D007994 3.4e-21 107.1 60 78.3
Thecc.09G192500 Theobroma cacao HOM05D006474 ORTHO05D007994 1.3e-20 105.1 61 75.4
SEGI_13868 Sequoiadendron giganteum HOM05D006474 ORTHO05D007994 5.5e-19 99.8 61 72.1
Gohir.A08G164600 Gossypium hirsutum HOM05D000075 ORTHO05D000264 1.0e-17 95.5 87 55.2
Lsat_1_v5_gn_3_77541 Lactuca sativa HOM05D006474 ORTHO05D007994 6.9e-14 82.8 54 64.8
Gohir.A05G306101 Gossypium hirsutum HOM05D005508 ORTHO05D007994 1.3e-12 78.6 43 72.1
Oeu005633.1 Olea europaea HOM05D006474 ORTHO05D007994 8.5e-12 75.9 63 54.0
Gohir.A06G077600 Gossypium hirsutum HOM05D000075 ORTHO05D000264 2.1e-10 71.2 71 54.9
SEGI_25707 Sequoiadendron giganteum HOM05D006474 ORTHO05D007994 5.1e-09 66.6 42 61.9
CAN.G1040.4 Capsicum annuum HOM05D004057 ORTHO05D004805 1.8e-06 58.2 165 28.5
MD15G1347600 Malus domestica HOM05D004057 ORTHO05D004805 1.8e-06 58.2 91 34.1
SEGI_36005 Sequoiadendron giganteum HOM05D004057 ORTHO05D004805 2.4e-06 57.8 86 34.9
MD08G1162200 Malus domestica HOM05D004057 ORTHO05D004805 3.1e-06 57.4 91 34.1
Nitab4.5_0001996g0080 Nicotiana tabacum HOM05D004057 ORTHO05D004805 4.1e-06 57.0 91 33.0
Actinidia21326 Actinidia chinensis HOM05D004057 ORTHO05D004805 5.3e-06 56.6 166 27.1
PGSC0003DMG402000895 Solanum tuberosum HOM05D004057 ORTHO05D004805 5.3e-06 56.6 91 33.0
CiPaw.05G221100 Carya illinoinensis HOM05D004057 ORTHO05D004805 6.9e-06 56.2 91 33.0
CiPaw.06G031400 Carya illinoinensis HOM05D004057 ORTHO05D004805 6.9e-06 56.2 91 33.0
Oeu026153.2 Olea europaea HOM05D004057 ORTHO05D004805 6.9e-06 56.2 91 33.0
Dinv07215 Davidia involucrata HOM05D004057 ORTHO05D004805 9.1e-06 55.8 139 27.3
Oeu040414.2 Olea europaea HOM05D004057 ORTHO05D004805 9.1e-06 55.8 91 34.1
PSO170G0366 Papaver somniferum HOM05D004057 ORTHO05D004805 9.1e-06 55.8 106 30.2
PSO528G0101 Papaver somniferum HOM05D004057 ORTHO05D004805 9.1e-06 55.8 106 30.2
Solyc06g060310.3 Solanum lycopersicum HOM05D004057 ORTHO05D004805 9.1e-06 55.8 153 28.1
Sopen06g020430 Solanum pennellii HOM05D004057 ORTHO05D004805 9.1e-06 55.8 153 28.1


User provided reference genes

Program Settings