Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc13g0009380 Simmondsia chinensis HOM05D005766 ORTHO05D007002 4.1e-273 944.1 479 100.0
Ah.07g206240 Amaranthus hybridus HOM05D005766 ORTHO05D007002 2.8e-176 622.5 482 68.3
EL10Ac3g05375 Beta vulgaris HOM05D005766 ORTHO05D007002 1.3e-173 613.6 472 68.2
TAR629G2087 Trochodendron aralioides HOM05D005766 ORTHO05D007002 2.4e-172 609.4 486 68.5
CiPaw.05G259700 Carya illinoinensis HOM05D005766 ORTHO05D007002 3.5e-171 605.5 485 67.8
Duzib205G0439 Durio zibethinus HOM05D005766 ORTHO05D007002 1.0e-170 604.0 480 66.9
GSVIVG01028775001 Vitis vinifera HOM05D005766 ORTHO05D007002 1.0e-170 604.0 487 67.6
Nn1g01746 Nelumbo nucifera HOM05D005766 ORTHO05D007002 2.9e-170 602.4 490 66.1
Prupe.2G304700 Prunus persica HOM05D005766 ORTHO05D007002 9.5e-169 597.4 479 66.2
Thecc.03G188900 Theobroma cacao HOM05D005766 ORTHO05D007002 4.0e-167 592.0 479 66.6
RcHm_v2.0_Chr1g0379661 Rosa chinensis HOM05D005766 ORTHO05D007002 5.2e-167 591.7 482 67.4
PSO170G0163 Papaver somniferum HOM05D005766 ORTHO05D007002 3.4e-166 589.0 488 64.5
Rhsim03G0196600 Rhododendron simsii HOM05D005766 ORTHO05D007002 7.5e-166 587.8 494 65.8
CsaV3_3G021770 Cucumis sativus L. HOM05D005766 ORTHO05D007002 3.7e-165 585.5 477 65.4
Hma1.2p1_0327F.1_g126600 Hydrangea macrophylla HOM05D005766 ORTHO05D007002 8.3e-165 584.3 480 64.2
Cfa016332 Carpinus fangiana HOM05D005766 ORTHO05D007002 2.4e-164 582.8 491 66.0
Potri.015G026100 Populus trichocarpa HOM05D005766 ORTHO05D007002 7.0e-164 581.3 488 65.6
ECA238G0894 Erigeron canadensis HOM05D005766 ORTHO05D000105 3.5e-163 578.9 479 64.5
Phvul.007G077400 Phaseolus vulgaris HOM05D005766 ORTHO05D007002 4.6e-163 578.6 482 66.2
TPR.G7746 Trifolium pratense HOM05D005766 ORTHO05D007002 4.6e-163 578.6 488 64.5
Cc02_g02130 Coffea canephora HOM05D005766 ORTHO05D007002 7.8e-163 577.8 485 64.5
Glyma.20G164300 Glycine max HOM05D005766 ORTHO05D007002 1.0e-162 577.4 482 67.0
MELO3C006963.2 Cucumis melo HOM05D005766 ORTHO05D007002 1.3e-162 577.0 482 64.1
Glyma.10G228700 Glycine max HOM05D005766 ORTHO05D007002 2.3e-162 576.2 478 65.3
Lj5g0016487 Lotus japonicus HOM05D005766 ORTHO05D007002 1.5e-161 573.5 479 65.3
PGR004G1861 Punica granatum HOM05D005766 ORTHO05D007002 5.6e-161 571.6 479 63.7
Gorai.008G272400 Gossypium raimondii HOM05D005766 ORTHO05D007002 9.5e-161 570.9 482 64.7
CANSAT21G0601 Cannabis sativa HOM05D005766 ORTHO05D007002 2.1e-160 569.7 480 65.0
Sopen12g011340 Solanum pennellii HOM05D005766 ORTHO05D007002 2.8e-160 569.3 472 63.3
Gohir.A12G254600 Gossypium hirsutum HOM05D005766 ORTHO05D007002 3.6e-160 568.9 481 64.7
Gohir.D12G254700 Gossypium hirsutum HOM05D005766 ORTHO05D007002 4.7e-160 568.5 481 64.4
Medtr1g099380 Medicago truncatula HOM05D005766 ORTHO05D007002 4.7e-160 568.5 468 66.5
Lalb_Chr06g0161411 Lupinus albus HOM05D005766 ORTHO05D007002 2.6e-158 562.8 480 64.4
MD01G1212200 Malus domestica HOM05D005766 ORTHO05D007002 5.8e-158 561.6 401 71.3
Dinv28359 Davidia involucrata HOM05D005766 ORTHO05D007002 1.7e-157 560.1 481 63.6
MD07G1282600 Malus domestica HOM05D005766 ORTHO05D007002 2.2e-157 559.7 506 61.7
HanXRQChr14g0440231 Helianthus annuus HOM05D005766 ORTHO05D007002 4.1e-156 555.4 331 81.3
MBI07_g26934_MAGBIO Magnolia biondii HOM05D005766 ORTHO05D007002 2.1e-155 553.1 508 61.6
Lsat_1_v5_gn_2_61121 Lactuca sativa HOM05D005766 ORTHO05D007002 7.8e-155 551.2 333 80.5
Psat6g194920 Pisum sativum HOM05D005766 ORTHO05D007002 7.8e-155 551.2 331 81.0
HPP92_022503 Vanilla planifolia HOM05D005766 ORTHO05D007002 1.0e-154 550.8 495 60.8
Ca_10701_v3 Cicer arietinum L. HOM05D005766 ORTHO05D007002 7.3e-153 544.7 455 65.7
Aqoxy5G04049 Aquilegia oxysepala HOM05D005766 ORTHO05D007002 4.7e-152 542.0 491 60.7
Manes.14G020100 Manihot esculenta HOM05D005766 ORTHO05D007002 4.7e-152 542.0 457 63.7
vmacro06594 Vaccinium macrocarpon HOM05D005766 ORTHO05D007002 1.8e-151 540.0 539 58.4
Peaxi162Scf00023g00720 Petunia axillaris HOM05D005766 ORTHO05D007002 4.0e-151 538.9 557 56.2
Oeu003335.2 Olea europaea HOM05D005766 ORTHO05D007002 1.3e-149 533.9 474 61.0
Migut.F00259 Erythranthe guttata HOM05D005766 ORTHO05D007002 1.4e-148 530.4 482 58.7
Atru.chr1.315 Acer truncatum HOM05D005766 ORTHO05D007002 4.1e-148 528.9 427 67.2
QL11p056564 Quercus lobata HOM05D005766 ORTHO05D007002 5.4e-148 528.5 390 70.8
Eucgr.K00307 Eucalyptus grandis HOM05D005766 ORTHO05D007002 7.1e-148 528.1 480 62.1
ATR1131G022 Amborella trichopoda HOM05D005766 ORTHO05D007002 1.2e-147 527.3 488 57.8
FvH4_7g30700 Fragaria vesca HOM05D005766 ORTHO05D007002 2.1e-144 516.5 444 62.6
Sed0015140 Sechium edule HOM05D005766 ORTHO05D007002 8.9e-143 511.1 440 64.3
ClCG05G008560 Citrullus lanatus HOM05D005766 ORTHO05D007002 4.4e-142 508.8 474 59.9
arahy.Tifrunner.gnm1.ann1.M1FPNI Arachis hypogaea HOM05D005766 ORTHO05D007002 5.6e-137 491.9 451 62.3
Hund04814 Selenicereus undatus HOM05D005766 ORTHO05D007002 5.6e-137 491.9 477 59.5
Sabra15G0019200 Salix brachista HOM05D005766 ORTHO05D007002 1.5e-134 483.8 334 74.0
Haze_00083 Corylus avellana HOM05D005766 ORTHO05D007002 2.4e-132 476.5 566 52.8
CDE02G1402 Ceratophyllum demersum HOM05D001977 ORTHO05D002246 3.5e-131 472.6 287 79.1
SalBow4G0986 Salvia bowleyana HOM05D005766 ORTHO05D007002 3.2e-124 449.5 472 53.8
arahy.Tifrunner.gnm1.ann1.8957SA Arachis hypogaea HOM05D005766 ORTHO05D007002 3.3e-121 439.5 485 55.7
Lj1A1010T47 Lonicera japonica HOM05D005766 ORTHO05D007002 2.0e-118 430.3 487 53.2
Mapoly0113s0021 Marchantia polymorpha HOM05D005766 ORTHO05D007002 6.0e-115 418.7 475 48.0
FAN06G2288 Fragaria x ananassa HOM05D005766 ORTHO05D007002 1.3e-114 417.5 490 51.0
Glyma.09G181880 Glycine max HOM05D005766 ORTHO05D007002 8.7e-114 414.8 244 83.2
FAN10G0167 Fragaria x ananassa HOM05D005766 ORTHO05D007002 3.3e-113 412.9 520 48.7
FAN10G3945 Fragaria x ananassa HOM05D005766 ORTHO05D007002 4.3e-113 412.5 520 48.5
SGA_v2.0_scaffold192G40599 Striga asiatica HOM05D005766 ORTHO05D007002 2.6e-110 403.3 377 60.2
AagrBONN_evm.TU.Sc2ySwM_344.4899 Anthoceros agrestis HOM05D005766 ORTHO05D007002 1.4e-108 397.5 331 58.9
TWI39G0494 Tripterygium wilfordii HOM05D005766 ORTHO05D007002 5.5e-108 395.6 485 49.5
Cpa.g.sc3.14 Carica papaya HOM05D005766 ORTHO05D007002 2.2e-101 373.6 482 49.4
CSS0024367 Camellia sinensis var. sinensis HOM05D005766 ORTHO05D007002 7.2e-100 368.6 349 61.0
CSS0041625 Camellia sinensis var. sinensis HOM05D005766 ORTHO05D007002 7.2e-100 368.6 349 61.0
FAN03G2278 Fragaria x ananassa HOM05D005766 ORTHO05D007002 2.1e-99 367.1 545 43.5
Nitab4.5_0014657g0010 Nicotiana tabacum HOM05D005766 ORTHO05D007002 2.5e-97 360.1 258 69.0
unitig_37.g11976 Utricularia gibba HOM05D005766 ORTHO05D007002 2.1e-83 313.9 252 60.7
SMO203G0206 Selaginella moellendorffii HOM05D005766 ORTHO05D007002 2.4e-79 300.4 372 47.0
Ciclev10004767m.g Citrus clementina HOM05D005766 ORTHO05D007002 2.3e-74 283.9 311 55.3
TWI39G0059 Tripterygium wilfordii HOM05D005766 ORTHO05D007002 1.2e-73 281.6 168 80.4
QL09p011984 Quercus lobata HOM05D005766 ORTHO05D007002 2.4e-71 273.9 258 60.9
CBR_g23333 Chara braunii HOM05D005766 ORTHO05D007002 9.4e-68 261.9 250 52.0
Sabra15G0021700 Salix brachista HOM05D005766 ORTHO05D007002 2.0e-65 254.2 193 68.9
Nitab4.5_0000157g0190 Nicotiana tabacum HOM05D005766 ORTHO05D007002 9.8e-65 251.9 279 54.5
FAN06G1885 Fragaria x ananassa HOM05D005766 ORTHO05D007002 4.9e-64 249.6 289 51.6
FAN01G0765 Fragaria x ananassa HOM05D005766 ORTHO05D007002 7.0e-63 245.7 289 51.6
Actinidia08607 Actinidia chinensis HOM05D005766 ORTHO05D007002 9.2e-63 245.4 155 78.1
Glyma.12G172150 Glycine max HOM05D005766 ORTHO05D007002 1.8e-58 231.1 131 86.3
SEGI_39054 Sequoiadendron giganteum HOM05D005766 ORTHO05D007002 2.3e-53 214.2 283 49.1
Glyma.16G148650 Glycine max HOM05D005766 ORTHO05D007002 3.6e-51 206.8 102 94.1
Glyma.10G228301 Glycine max HOM05D005766 ORTHO05D007002 3.1e-50 203.8 100 95.0
Glyma.03G072901 Glycine max HOM05D005766 ORTHO05D007002 8.6e-45 185.7 115 78.3
QL09p011981 Quercus lobata HOM05D005766 ORTHO05D007002 3.7e-40 170.2 101 80.2
PRCOL_00006853 Prasinoderma coloniale HOM05D005766 ORTHO05D007002 3.9e-37 160.2 359 32.6
Nitab4.5_0000327g0060 Nicotiana tabacum HOM05D005766 ORTHO05D007002 4.9e-32 143.3 90 75.6
CSS0010184 Camellia sinensis var. sinensis HOM05D005766 ORTHO05D007002 4.7e-27 126.7 78 76.9
CSS0002634 Camellia sinensis var. sinensis HOM05D005766 ORTHO05D007002 1.2e-25 122.1 68 85.3
Actinidia08608 Actinidia chinensis HOM05D005766 ORTHO05D007002 5.8e-25 119.8 67 82.1
COL.COLO4_30253 Corchorus olitorius HOM05D005766 ORTHO05D007002 4.9e-24 116.7 192 44.3
Cfa000854 Carpinus fangiana HOM05D005766 ORTHO05D007002 5.4e-23 113.2 71 77.5
DCAR_008901 Daucus carota HOM05D000149 ORTHO05D000076 6.0e-22 109.8 286 30.4
Cre01.g002700 Chlamydomonas reinhardtii HOM05D005766 ORTHO05D007002 1.8e-13 81.6 258 25.2
Peaxi162Scf00603g00414 Petunia axillaris HOM05D007579 ORTHO05D000285 8.7e-13 79.3 60 65.0
ECA233G2827 Erigeron canadensis HOM05D000836 ORTHO05D000709 1.4e-10 72.0 294 25.5
Lj1g0002370 Lotus japonicus HOM05D006183 ORTHO05D007844 6.9e-10 69.7 338 23.1
Gorai.001G237200 Gossypium raimondii HOM05D006183 ORTHO05D007844 2.6e-09 67.8 343 23.0
Medtr1g097140 Medicago truncatula HOM05D003913 ORTHO05D004803 2.6e-09 67.8 316 23.4
Gohir.D07G209800 Gossypium hirsutum HOM05D006183 ORTHO05D007844 3.4e-09 67.4 363 22.6
RcHm_v2.0_Chr7g0190461 Rosa chinensis HOM05D002332 ORTHO05D002509 3.4e-09 67.4 250 25.2
GSVIVG01035793001 Vitis vinifera HOM05D000836 ORTHO05D000709 4.5e-09 67.0 235 25.1
Haze_07236 Corylus avellana HOM05D002332 ORTHO05D002509 7.6e-09 66.2 250 24.8
Gohir.A07G203800 Gossypium hirsutum HOM05D006183 ORTHO05D007844 7.6e-09 66.2 359 22.0
Thhalv10001927m.g Eutrema salsugineum HOM05D006183 ORTHO05D007844 9.9e-09 65.9 348 22.7
FAN08G0156 Fragaria x ananassa HOM05D002332 ORTHO05D002509 9.9e-09 65.9 253 24.9
TWI39G1032 Tripterygium wilfordii HOM05D002332 ORTHO05D002509 1.3e-08 65.5 201 24.4
Cpa.g.sc87.44 Carica papaya HOM05D006183 ORTHO05D007844 2.2e-08 64.7 348 21.6
FvH4_5g07940 Fragaria vesca HOM05D002332 ORTHO05D002509 2.2e-08 64.7 254 23.6
FAN18G1292 Fragaria x ananassa HOM05D002332 ORTHO05D002509 2.2e-08 64.7 254 23.6
Haze_24717 Corylus avellana HOM05D006183 ORTHO05D007844 2.9e-08 64.3 348 21.8
QL09p042323 Quercus lobata HOM05D006183 ORTHO05D007844 3.8e-08 63.9 370 21.9
Cfa018843 Carpinus fangiana HOM05D002332 ORTHO05D002509 4.9e-08 63.5 255 24.7
Actinidia30118 Actinidia chinensis HOM05D006183 ORTHO05D007844 8.4e-08 62.8 235 23.8
Duzib133G1169 Durio zibethinus HOM05D006183 ORTHO05D007844 8.4e-08 62.8 343 21.9
ECA246G4130 Erigeron canadensis HOM05D000836 ORTHO05D000709 8.4e-08 62.8 249 25.7
Gohir.A03G093900 Gossypium hirsutum HOM05D000836 ORTHO05D000709 8.4e-08 62.8 262 24.8
Gohir.D02G123100 Gossypium hirsutum HOM05D000836 ORTHO05D000709 8.4e-08 62.8 262 24.8
Solyc12g009030.2 Solanum lycopersicum HOM05D005151 ORTHO05D006322 8.4e-08 62.8 229 24.5
GSVIVG01028442001 Vitis vinifera HOM05D006183 ORTHO05D007844 8.4e-08 62.8 348 21.0
Cfa002493 Carpinus fangiana HOM05D006183 ORTHO05D007844 1.4e-07 62.0 348 21.6
Psat6g188560 Pisum sativum HOM05D000168 ORTHO05D004803 1.4e-07 62.0 224 24.6
Aqoxy5G00112 Aquilegia oxysepala HOM05D006183 ORTHO05D007844 1.9e-07 61.6 364 21.2
HanXRQChr13g0402111 Helianthus annuus HOM05D000836 ORTHO05D000709 2.4e-07 61.2 252 24.2
MD15G1103400 Malus domestica HOM05D000836 ORTHO05D000709 3.2e-07 60.8 250 25.2
Lsat_1_v5_gn_5_32800 Lactuca sativa HOM05D000836 ORTHO05D000709 4.2e-07 60.5 244 24.6
Lsat_1_v5_gn_6_22840 Lactuca sativa HOM05D000836 ORTHO05D000709 4.2e-07 60.5 246 24.8
Gorai.005G131200 Gossypium raimondii HOM05D000836 ORTHO05D000709 5.5e-07 60.1 262 24.4
Atru.chr5.1959 Acer truncatum HOM05D006183 ORTHO05D007844 7.1e-07 59.7 342 21.3
C07p00800 Brassica napus HOM05D006183 ORTHO05D007844 7.1e-07 59.7 338 23.1
HanXRQChr08g0234451 Helianthus annuus HOM05D000836 ORTHO05D000709 7.1e-07 59.7 244 24.6
GSVIVG01008513001 Vitis vinifera HOM05D002332 ORTHO05D002509 7.1e-07 59.7 197 24.4
Dinv19261 Davidia involucrata HOM05D006183 ORTHO05D007844 9.3e-07 59.3 285 22.5
AL8G16210 Arabidopsis lyrata HOM05D001610 ORTHO05D001585 1.2e-06 58.9 237 23.2
Glyma.08G354500 Glycine max HOM05D000836 ORTHO05D000709 1.2e-06 58.9 231 22.1
Glyma.18G275100 Glycine max HOM05D002332 ORTHO05D002509 1.6e-06 58.5 152 27.6
Gohir.D08G042200 Gossypium hirsutum HOM05D005813 ORTHO05D007310 2.1e-06 58.2 350 19.7
MD15G1117100 Malus domestica HOM05D000836 ORTHO05D000709 2.1e-06 58.2 233 24.5
Glyma.18G114800 Glycine max HOM05D001610 ORTHO05D001585 2.7e-06 57.8 321 22.4
Lalb_Chr08g0243861 Lupinus albus HOM05D000836 ORTHO05D000709 2.7e-06 57.8 248 23.8
PGR083G1558 Punica granatum HOM05D000836 ORTHO05D000709 2.7e-06 57.8 225 25.3
Atru.chr5.306 Acer truncatum HOM05D005813 ORTHO05D007310 3.5e-06 57.4 348 19.0
HanXRQChr11g0320951 Helianthus annuus HOM05D000992 ORTHO05D001928 3.5e-06 57.4 323 22.6
MBI18_g04561_MAGBIO Magnolia biondii HOM05D000467 ORTHO05D000379 3.5e-06 57.4 229 25.3
CiPaw.05G179300 Carya illinoinensis HOM05D002332 ORTHO05D002509 4.6e-06 57.0 152 25.0
Gohir.A08G031100 Gossypium hirsutum HOM05D005813 ORTHO05D007310 6.0e-06 56.6 350 19.7
SalBow2G0244 Salvia bowleyana HOM05D004669 ORTHO05D005767 6.0e-06 56.6 221 24.0
Solyc06g065640.3 Solanum lycopersicum HOM05D000836 ORTHO05D000709 6.0e-06 56.6 317 23.3
Sopen06g024040 Solanum pennellii HOM05D000836 ORTHO05D000709 6.0e-06 56.6 317 23.3
Thecc.01G376600 Theobroma cacao HOM05D005813 ORTHO05D007310 6.0e-06 56.6 346 18.8
Carub.0008s0496 Capsella rubella HOM05D001610 ORTHO05D001585 7.9e-06 56.2 236 22.0
CDE06G0774 Ceratophyllum demersum HOM05D000836 ORTHO05D000709 7.9e-06 56.2 244 23.4
Lsat_1_v5_gn_5_8840 Lactuca sativa HOM05D000467 ORTHO05D000379 7.9e-06 56.2 398 23.6
Manes.05G045300 Manihot esculenta HOM05D005813 ORTHO05D007310 7.9e-06 56.2 349 19.8
Potri.014G069400 Populus trichocarpa HOM05D005813 ORTHO05D007310 7.9e-06 56.2 346 21.4
vmacro06124 Vaccinium macrocarpon HOM05D006783 ORTHO05D008330 7.9e-06 56.2 48 58.3


User provided reference genes

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