Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc13g0005040 Simmondsia chinensis HOM05D005259 ORTHO05D006402 0.0e+00 2145.9 1065 100.0
Thecc.04G246200 Theobroma cacao HOM05D005259 ORTHO05D006402 4.5e-171 606.3 1134 37.4
TAR633G1135 Trochodendron aralioides HOM05D005259 ORTHO05D006402 1.1e-169 601.7 1164 36.8
CSS0027429 Camellia sinensis var. sinensis HOM05D005259 ORTHO05D006402 2.5e-169 600.5 1093 36.6
CSS0043582 Camellia sinensis var. sinensis HOM05D005259 ORTHO05D006402 4.3e-169 599.7 1095 37.1
Ciclev10004215m.g Citrus clementina HOM05D005259 ORTHO05D006402 1.6e-168 597.8 1145 37.6
Potri.008G162500 Populus trichocarpa HOM05D005259 ORTHO05D006402 3.6e-168 596.7 1122 36.3
Cfa008379 Carpinus fangiana HOM05D005259 ORTHO05D006402 9.8e-166 588.6 1101 38.3
TAR362G0225 Trochodendron aralioides HOM05D005259 ORTHO05D006402 2.9e-165 587.0 1171 36.0
Duzib151G0402 Durio zibethinus HOM05D005259 ORTHO05D006402 2.0e-163 580.9 1132 36.5
COL.COLO4_15792 Corchorus olitorius HOM05D005259 ORTHO05D006402 8.6e-162 575.5 1121 37.5
Hma1.2p1_0650F.1_g195420 Hydrangea macrophylla HOM05D005259 ORTHO05D006402 2.8e-160 570.5 1109 36.7
Potri.010G076700 Populus trichocarpa HOM05D005259 ORTHO05D006402 3.6e-160 570.1 1123 36.0
Atru.chr4.2229 Acer truncatum HOM05D005259 ORTHO05D006402 2.3e-159 567.4 1124 36.3
Duzib052G0218 Durio zibethinus HOM05D005259 ORTHO05D006402 2.3e-159 567.4 1108 36.5
Manes.03G168800 Manihot esculenta HOM05D005259 ORTHO05D006402 7.5e-158 562.4 1115 37.2
CiPaw.01G190300 Carya illinoinensis HOM05D005259 ORTHO05D001287 3.7e-157 560.1 1099 36.1
Sabra08G0123900 Salix brachista HOM05D005259 ORTHO05D006402 6.4e-157 559.3 1115 34.8
Duzib212G1015 Durio zibethinus HOM05D005259 ORTHO05D006402 6.0e-155 552.7 1133 35.8
TWI73G0531 Tripterygium wilfordii HOM05D005259 ORTHO05D006402 2.2e-149 534.3 1122 35.4
Cpa.g.sc58.48 Carica papaya HOM05D005259 ORTHO05D006402 1.4e-148 531.6 1116 35.4
Actinidia04478 Actinidia chinensis HOM05D005259 ORTHO05D002253 2.4e-148 530.8 1100 34.9
CiPaw.02G116300 Carya illinoinensis HOM05D005259 ORTHO05D006402 2.8e-144 517.3 1152 33.7
Prupe.1G030800 Prunus persica HOM05D005259 ORTHO05D006402 6.8e-143 512.7 1123 35.2
QL06p015741 Quercus lobata HOM05D005259 ORTHO05D006402 1.2e-142 511.9 1100 35.0
MBI04_g07579_MAGBIO Magnolia biondii HOM05D005259 ORTHO05D006402 2.4e-140 504.2 1198 33.7
Peaxi162Scf00813g00016 Petunia axillaris HOM05D005259 ORTHO05D006402 5.4e-140 503.1 1093 33.0
Manes.15G037000 Manihot esculenta HOM05D005259 ORTHO05D006402 3.0e-138 497.3 1063 34.7
GSVIVG01018119001 Vitis vinifera HOM05D005259 ORTHO05D006402 5.1e-138 496.5 1130 32.9
Sabra10G0032100 Salix brachista HOM05D005259 ORTHO05D006402 1.4e-135 488.4 1062 35.0
Nitab4.5_0004798g0010 Nicotiana tabacum HOM05D005259 ORTHO05D006402 2.1e-131 474.6 1115 33.1
FAN12G0451 Fragaria x ananassa HOM05D005259 ORTHO05D006402 3.0e-130 470.7 1126 32.6
Glyma.11G008300 Glycine max HOM05D005259 ORTHO05D006402 3.0e-130 470.7 1115 32.2
Nn1g02609 Nelumbo nucifera HOM05D005259 ORTHO05D006402 3.9e-130 470.3 1184 31.5
RcHm_v2.0_Chr4g0390511 Rosa chinensis HOM05D005259 ORTHO05D006402 3.9e-130 470.3 1116 33.6
CAN.G1007.13 Capsicum annuum HOM05D005259 ORTHO05D006402 1.5e-129 468.4 1097 32.9
Nn3g19539 Nelumbo nucifera HOM05D005259 ORTHO05D006402 1.6e-128 464.9 1187 31.3
PSO210G6035 Papaver somniferum HOM05D005259 ORTHO05D006402 1.6e-128 464.9 1144 31.9
arahy.Tifrunner.gnm1.ann1.SM0BS0 Arachis hypogaea HOM05D005259 ORTHO05D006402 1.1e-127 462.2 1105 32.8
PSO832G3620 Papaver somniferum HOM05D005259 ORTHO05D006402 4.0e-127 460.3 1144 31.7
FvH4_4g02690 Fragaria vesca HOM05D005259 ORTHO05D006402 9.0e-127 459.1 1122 32.6
ClCG05G004600 Citrullus lanatus HOM05D005259 ORTHO05D006402 1.5e-126 458.4 1114 33.0
FAN22G1888 Fragaria x ananassa HOM05D005259 ORTHO05D006402 2.6e-126 457.6 1125 32.4
PGSC0003DMG400001126 Solanum tuberosum HOM05D005259 ORTHO05D006402 1.7e-125 454.9 1099 32.5
MD16G1208700 Malus domestica HOM05D005259 ORTHO05D006402 4.9e-125 453.4 1112 33.0
VMungo1215G2763 Vigna mungo HOM05D005259 ORTHO05D006402 1.1e-124 452.2 1110 32.2
Glyma.01G234600 Glycine max HOM05D005259 ORTHO05D006402 2.1e-123 448.0 1132 32.4
Rhsim04G0190300 Rhododendron simsii HOM05D005259 ORTHO05D006402 4.6e-123 446.8 1101 33.2
Cc03_g04860 Coffea canephora HOM05D005259 ORTHO05D006402 7.9e-123 446.0 1114 31.9
Sopen09g032310 Solanum pennellii HOM05D005259 ORTHO05D006402 1.5e-121 441.8 1109 32.3
vmacro08412 Vaccinium macrocarpon HOM05D005259 ORTHO05D006402 4.0e-119 433.7 1113 32.4
FAN17G1158 Fragaria x ananassa HOM05D005259 ORTHO05D006402 5.3e-119 433.3 1115 31.7
Aqoxy5G00317 Aquilegia oxysepala HOM05D005259 ORTHO05D006402 2.6e-118 431.0 1185 31.0
Gohir.A09G223300 Gossypium hirsutum HOM05D005259 ORTHO05D006402 4.2e-116 423.7 1074 33.2
LjContig00222g0005017 Lotus japonicus HOM05D005259 ORTHO05D006402 5.5e-116 423.3 1112 31.9
Eucgr.H03158 Eucalyptus grandis HOM05D005259 ORTHO05D006402 7.1e-116 422.9 967 35.6
Phvul.002G042000 Phaseolus vulgaris HOM05D005259 ORTHO05D006402 4.6e-115 420.2 1062 33.3
Potri.008G162150 Populus trichocarpa HOM05D005259 ORTHO05D006402 6.0e-115 419.9 901 34.2
Gohir.D09G225300 Gossypium hirsutum HOM05D005259 ORTHO05D006402 1.0e-114 419.1 1072 33.0
Sed0002321 Sechium edule HOM05D005259 ORTHO05D006402 1.0e-114 419.1 1129 32.4
Medtr5g007040 Medicago truncatula HOM05D005259 ORTHO05D006402 3.9e-114 417.2 1082 30.8
Gorai.006G246800 Gossypium raimondii HOM05D005259 ORTHO05D006402 5.1e-114 416.8 1071 33.5
MELO3C006469.2 Cucumis melo HOM05D005259 ORTHO05D006402 5.6e-113 413.3 1119 31.8
Oeu049793.2 Olea europaea HOM05D005259 ORTHO05D006402 5.6e-113 413.3 1119 31.2
Dinv29911 Davidia involucrata HOM05D005259 ORTHO05D006402 2.6e-110 404.4 528 43.0
Sed0017180 Sechium edule HOM05D005259 ORTHO05D006402 2.2e-109 401.4 1086 32.0
CsaV3_3G012580 Cucumis sativus L. HOM05D005259 ORTHO05D006402 2.5e-108 397.9 1119 31.6
Nitab4.5_0000525g0240 Nicotiana tabacum HOM05D005259 ORTHO05D006402 2.5e-108 397.9 1102 30.0
MD13G1207300 Malus domestica HOM05D005259 ORTHO05D006402 1.8e-106 391.7 1102 31.3
Lalb_Chr09g0320051 Lupinus albus HOM05D005259 ORTHO05D006402 3.0e-106 391.0 1100 29.9
MSTRG.9924 Avicennia marina HOM05D005259 ORTHO05D006402 1.5e-105 388.7 1108 32.7
Psat2g189680 Pisum sativum HOM05D005259 ORTHO05D006402 1.5e-102 378.6 1086 29.7
TPR.G37888 Trifolium pratense HOM05D005259 ORTHO05D006402 1.0e-101 375.9 1096 30.7
MSTRG.24702 Avicennia marina HOM05D005259 ORTHO05D006402 2.2e-101 374.8 1098 29.6
Oeu003588.2 Olea europaea HOM05D005259 ORTHO05D006402 5.1e-98 363.6 883 31.8
Actinidia40086 Actinidia chinensis HOM05D005259 ORTHO05D006402 1.2e-94 352.4 1074 29.1
DCAR_002351 Daucus carota HOM05D005259 ORTHO05D006402 2.2e-88 331.6 861 31.8
Sp2g08420 Schrenkiella parvula HOM05D005259 ORTHO05D006402 3.1e-87 327.8 1057 30.0
Aa31LG5G3600 Aethionema arabicum HOM05D005259 ORTHO05D006402 4.1e-87 327.4 1081 29.6
Thhalv10003150m.g Eutrema salsugineum HOM05D005259 ORTHO05D006402 1.1e-84 319.3 874 32.4
AT5G43630 Arabidopsis thaliana HOM05D005259 ORTHO05D006402 2.1e-83 315.1 1062 29.9
Ca_24427_v3 Cicer arietinum L. HOM05D005259 ORTHO05D006402 6.1e-83 313.5 1100 28.0
Carub.0008s0502 Capsella rubella HOM05D005259 ORTHO05D006402 3.7e-80 304.3 804 32.6
ATR0665G554 Amborella trichopoda HOM05D005259 ORTHO05D006402 1.8e-79 302.0 1115 27.2
BolC7t43150H Brassica oleracea HOM05D005259 ORTHO05D006402 6.5e-77 293.5 745 32.8
BcaC06g34639 Brassica carinata HOM05D005259 ORTHO05D006402 8.5e-77 293.1 745 32.8
C07p26220 Brassica napus HOM05D005259 ORTHO05D006402 8.5e-77 293.1 745 32.8
BcaC06g31686 Brassica carinata HOM05D005259 ORTHO05D006402 1.8e-74 285.4 821 30.7
BraA06t27646Z Brassica rapa HOM05D005259 ORTHO05D006402 5.7e-73 280.4 748 32.4
BcaB07g30565 Brassica carinata HOM05D005259 ORTHO05D006402 9.7e-73 279.6 717 31.7
A06p47780 Brassica napus HOM05D005259 ORTHO05D006402 1.1e-71 276.2 748 32.1
CDE07G1991 Ceratophyllum demersum HOM05D000989 ORTHO05D006402 5.3e-71 273.9 746 29.9
Dinv44635 Davidia involucrata HOM05D005259 ORTHO05D006402 3.1e-63 248.1 706 32.3
Medtr6g046940 Medicago truncatula HOM05D005259 ORTHO05D006402 3.1e-63 248.1 958 27.9
Haze_11300 Corylus avellana HOM05D005259 ORTHO05D006402 3.4e-57 228.0 453 36.6
CARHR006260 Cardamine hirsuta HOM05D005259 ORTHO05D006402 7.5e-57 226.9 348 39.4
Nitab4.5_0004798g0040 Nicotiana tabacum HOM05D005259 ORTHO05D006402 6.3e-56 223.8 552 32.2
Actinidia08443 Actinidia chinensis HOM05D005259 ORTHO05D006402 3.5e-54 218.0 327 39.4
Dinv44634 Davidia involucrata HOM05D005259 ORTHO05D006402 1.8e-50 205.7 251 44.6
Solyc09g083390.3 Solanum lycopersicum HOM05D005259 ORTHO05D006402 9.2e-47 193.4 703 30.0
THA.LOC104815985 Tarenaya hassleriana HOM05D000856 ORTHO05D001792 3.5e-46 191.4 297 36.0
Nitab4.5_0000525g0230 Nicotiana tabacum HOM05D005259 ORTHO05D006402 3.0e-45 188.3 515 31.5
Glyma.10G185100 Glycine max HOM05D005259 ORTHO05D006402 8.0e-43 180.3 818 27.1
VMungo0720G1316 Vigna mungo HOM05D005259 ORTHO05D006402 5.2e-42 177.6 781 26.5
SGA_v2.0_scaffold88G27281 Striga asiatica HOM05D005259 ORTHO05D006402 8.9e-42 176.8 325 34.5
Actinidia05464 Actinidia chinensis HOM05D005259 ORTHO05D006402 3.4e-41 174.9 191 47.1
Migut.G00437 Erythranthe guttata HOM05D005259 ORTHO05D006402 3.4e-41 174.9 1011 25.1
Lsat_1_v5_gn_5_72841 Lactuca sativa HOM05D005259 ORTHO05D006402 4.1e-39 167.9 180 48.3
Os01g0775100 Oryza sativa ssp. japonica HOM05D005259 ORTHO05D006402 1.6e-38 166.0 741 25.6
Dinv29910 Davidia involucrata HOM05D005259 ORTHO05D006402 2.7e-38 165.2 535 31.2
Nitab4.5_0000036g0130 Nicotiana tabacum HOM05D005259 ORTHO05D006402 3.0e-37 161.8 140 55.7
ECA233G4142 Erigeron canadensis HOM05D005259 ORTHO05D006402 8.6e-37 160.2 132 56.8
Actinidia08442 Actinidia chinensis HOM05D005259 ORTHO05D006402 3.3e-36 158.3 594 29.3
HanXRQChr15g0468851 Helianthus annuus HOM05D005259 ORTHO05D006402 5.6e-36 157.5 130 54.6
Migut.N00239 Erythranthe guttata HOM05D005259 ORTHO05D006402 7.3e-36 157.1 1085 24.1
Lsat_1_v5_gn_3_123200 Lactuca sativa HOM05D005259 ORTHO05D006402 2.8e-35 155.2 134 56.0
ECA240G1753 Erigeron canadensis HOM05D005259 ORTHO05D006402 2.3e-34 152.1 133 53.4
HanXRQChr13g0424471 Helianthus annuus HOM05D005259 ORTHO05D006402 1.2e-33 149.8 133 53.4
Lj6A656T71 Lonicera japonica HOM05D005259 ORTHO05D006402 2.4e-31 142.1 215 36.7
Cc00_g33140 Coffea canephora HOM05D005259 ORTHO05D006402 4.1e-31 141.4 113 60.2
Lalb_Chr02g0150411 Lupinus albus HOM05D005259 ORTHO05D006402 5.4e-31 141.0 792 26.8
HanXRQChr03g0092361 Helianthus annuus HOM05D005259 ORTHO05D006402 1.0e-29 136.7 134 51.5
HPP92_018440 Vanilla planifolia HOM05D005259 ORTHO05D006402 2.3e-29 135.6 390 28.7
Phvul.007G125900 Phaseolus vulgaris HOM05D005259 ORTHO05D006402 3.3e-28 131.7 777 26.5
Zm00001eb151720 Zea mays HOM05D005259 ORTHO05D006402 1.5e-25 122.9 1034 22.6
Lalb_Chr06g0169311 Lupinus albus HOM05D005259 ORTHO05D006402 2.6e-25 122.1 761 24.2
RcHm_v2.0_Chr7g0198831 Rosa chinensis HOM05D005259 ORTHO05D006402 1.3e-24 119.8 122 47.5
Lj5g0013708 Lotus japonicus HOM05D005259 ORTHO05D006402 7.1e-23 114.0 816 24.0
Ca_09836_v3 Cicer arietinum L. HOM05D005259 ORTHO05D006402 1.6e-22 112.8 773 24.5
SalBow3G4073 Salvia bowleyana HOM05D005259 ORTHO05D006402 6.0e-22 110.9 138 43.5
SMO111G0058 Selaginella moellendorffii HOM05D007564 ORTHO05D013712 5.1e-21 107.8 320 26.9
SMO205G0008 Selaginella moellendorffii HOM05D007564 ORTHO05D009975 6.6e-21 107.5 319 28.2
SMO276G0057 Selaginella moellendorffii HOM05D007564 ORTHO05D009975 3.6e-19 101.7 330 27.9
MBI04_g45851_MAGBIO Magnolia biondii HOM05D005259 ORTHO05D006402 3.1e-18 98.6 427 28.3
Cc00_g10240 Coffea canephora HOM05D005259 ORTHO05D006402 8.4e-16 90.5 67 62.7
Medtr1g075280 Medicago truncatula HOM05D005259 ORTHO05D006402 1.4e-15 89.7 492 26.2
TPR.G17184 Trifolium pratense HOM05D005259 ORTHO05D006402 1.4e-15 89.7 58 65.5
TPR.G27199 Trifolium pratense HOM05D005259 ORTHO05D006402 4.2e-15 88.2 609 23.6
arahy.Tifrunner.gnm1.ann1.7CP98C Arachis hypogaea HOM05D005259 ORTHO05D006402 1.2e-14 86.7 109 42.2
Lj6A656T72 Lonicera japonica HOM05D005259 ORTHO05D006402 7.3e-12 77.4 102 44.1
Psat4g092760 Pisum sativum HOM05D005259 ORTHO05D006402 5.8e-09 67.8 473 24.9
arahy.Tifrunner.gnm1.ann1.TEF2FC Arachis hypogaea HOM05D005259 ORTHO05D006402 7.1e-07 60.8 74 39.2
arahy.Tifrunner.gnm1.ann1.YIX0R7 Arachis hypogaea HOM05D005259 ORTHO05D006402 1.6e-06 59.7 423 24.6
SMO205G0005 Selaginella moellendorffii HOM05D007564 ORTHO05D013712 7.9e-06 57.4 58 44.8


User provided reference genes

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