Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc13g0004100 Simmondsia chinensis HOM05D004989 ORTHO05D006335 7.5e-189 663.7 333 100.0
AUR62026218 Chenopodium quinoa HOM05D004989 ORTHO05D006335 7.1e-131 471.1 318 74.8
EL10Ac3g05973 Beta vulgaris HOM05D004989 ORTHO05D006335 7.9e-130 467.6 320 73.4
Cfa015597 Carpinus fangiana HOM05D004989 ORTHO05D006335 6.7e-129 464.5 321 72.6
CSS0017868 Camellia sinensis var. sinensis HOM05D004989 ORTHO05D006335 1.9e-128 463.0 306 76.5
MD16G1186000 Malus domestica HOM05D004989 ORTHO05D006335 1.9e-128 463.0 330 71.5
Glyma.07G257800 Glycine max HOM05D004989 ORTHO05D006335 4.3e-128 461.8 327 72.8
GSVIVG01017902001 Vitis vinifera HOM05D004989 ORTHO05D006335 5.6e-128 461.5 319 74.0
Dinv44490 Davidia involucrata HOM05D004989 ORTHO05D006335 9.6e-128 460.7 301 75.7
Prupe.1G152800 Prunus persica HOM05D004989 ORTHO05D006335 6.2e-127 458.0 328 71.6
Dinv38405 Davidia involucrata HOM05D004989 ORTHO05D006335 8.2e-127 457.6 300 76.7
CANSAT78G0752 Cannabis sativa HOM05D004989 ORTHO05D006335 1.4e-126 456.8 321 72.6
CiPaw.02G093300 Carya illinoinensis HOM05D004989 ORTHO05D006335 1.8e-126 456.4 321 70.4
Ciclev10005119m.g Citrus clementina HOM05D004989 ORTHO05D006335 3.4e-125 452.2 319 71.2
VMungo1215G0587 Vigna mungo HOM05D004989 ORTHO05D006335 3.4e-125 452.2 318 71.1
TAR365G0616 Trochodendron aralioides HOM05D004989 ORTHO05D006335 4.5e-125 451.8 318 72.3
Glyma.17G016200 Glycine max HOM05D004989 ORTHO05D006335 3.8e-124 448.7 315 73.0
CSS0000312 Camellia sinensis var. sinensis HOM05D004989 ORTHO05D006335 4.9e-124 448.4 296 75.7
QL06p003872 Quercus lobata HOM05D004989 ORTHO05D006335 6.5e-124 448.0 335 68.7
arahy.Tifrunner.gnm1.ann1.L7AGGG Arachis hypogaea HOM05D004989 ORTHO05D006335 7.1e-123 444.5 328 70.1
Migut.G00301 Erythranthe guttata HOM05D004989 ORTHO05D006335 1.2e-122 443.7 305 73.4
vmacro15315 Vaccinium macrocarpon HOM05D004989 ORTHO05D006335 1.2e-122 443.7 306 72.2
MSTRG.4001 Avicennia marina HOM05D004989 ORTHO05D006335 2.1e-122 443.0 303 72.6
Peaxi162Scf00134g02033 Petunia axillaris HOM05D004989 ORTHO05D006335 2.1e-122 443.0 303 71.6
Nn1g02182 Nelumbo nucifera HOM05D004989 ORTHO05D006335 3.5e-122 442.2 316 69.9
arahy.Tifrunner.gnm1.ann1.8A1ZYN Arachis hypogaea HOM05D004989 ORTHO05D006335 6.0e-122 441.4 328 69.8
RcHm_v2.0_Chr4g0417841 Rosa chinensis HOM05D004989 ORTHO05D006335 1.3e-121 440.3 324 71.3
FvH4_4g14760 Fragaria vesca HOM05D004989 ORTHO05D006335 3.9e-121 438.7 300 74.3
Manes.03G183100 Manihot esculenta HOM05D004989 ORTHO05D006335 3.9e-121 438.7 318 70.1
Potri.008G203600 Populus trichocarpa HOM05D004989 ORTHO05D006335 3.9e-121 438.7 316 69.9
HanXRQChr12g0359311 Helianthus annuus HOM05D004989 ORTHO05D006335 6.7e-121 438.0 315 70.8
MELO3C006557.2 Cucumis melo HOM05D004989 ORTHO05D006335 8.7e-121 437.6 296 73.6
Lj6g0002948 Lotus japonicus HOM05D004989 ORTHO05D006335 1.5e-120 436.8 316 70.9
MBI14_g28267_MAGBIO Magnolia biondii HOM05D004989 ORTHO05D006335 2.5e-120 436.0 324 68.2
SalBow2G0224 Salvia bowleyana HOM05D004989 ORTHO05D006335 4.3e-120 435.3 315 68.9
Sed0017941 Sechium edule HOM05D004989 ORTHO05D006335 5.7e-120 434.9 294 74.1
Medtr2g022530 Medicago truncatula HOM05D004989 ORTHO05D006335 9.7e-120 434.1 290 73.8
Carub.0006s1748 Capsella rubella HOM05D004989 ORTHO05D006335 1.3e-119 433.7 313 70.6
Lalb_Chr18g0056141 Lupinus albus HOM05D004989 ORTHO05D006335 1.3e-119 433.7 317 72.2
Cc03_g03230 Coffea canephora HOM05D004989 ORTHO05D006335 2.2e-119 433.0 307 69.1
Thecc.04G224100 Theobroma cacao HOM05D004989 ORTHO05D006335 3.7e-119 432.2 329 67.8
Atru.chr4.2544 Acer truncatum HOM05D004989 ORTHO05D006335 4.8e-119 431.8 267 79.4
CsaV3_3G013610 Cucumis sativus L. HOM05D004989 ORTHO05D006335 4.8e-119 431.8 296 73.6
Thhalv10013830m.g Eutrema salsugineum HOM05D004989 ORTHO05D006335 1.1e-118 430.6 313 70.3
PSO017G3853 Papaver somniferum HOM05D004989 ORTHO05D006335 1.8e-118 429.9 307 71.0
ECA234G2869 Erigeron canadensis HOM05D004989 ORTHO05D006335 3.1e-118 429.1 260 79.2
AL6G30570 Arabidopsis lyrata HOM05D004989 ORTHO05D006335 5.3e-118 428.3 313 70.3
Eucgr.B01122 Eucalyptus grandis HOM05D004989 ORTHO05D006335 5.3e-118 428.3 293 72.0
Ah.07g202120 Amaranthus hybridus HOM05D004989 ORTHO05D006335 9.0e-118 427.6 302 71.5
A03p09380 Brassica napus HOM05D004989 ORTHO05D006335 1.5e-117 426.8 313 69.3
THA.LOC104818802 Tarenaya hassleriana HOM05D004989 ORTHO05D006335 1.5e-117 426.8 330 69.1
Gorai.005G041000 Gossypium raimondii HOM05D004989 ORTHO05D006335 2.0e-117 426.4 318 70.1
Aqoxy3G00936 Aquilegia oxysepala HOM05D004989 ORTHO05D006335 2.6e-117 426.0 301 71.1
MSTRG.10011 Avicennia marina HOM05D004989 ORTHO05D006335 2.6e-117 426.0 262 79.4
Ca_00634_v3 Cicer arietinum L. HOM05D004989 ORTHO05D006335 3.4e-117 425.6 302 72.2
CAN.G69.27 Capsicum annuum HOM05D004989 ORTHO05D006335 4.5e-117 425.2 265 76.6
Gohir.A02G029300 Gossypium hirsutum HOM05D004989 ORTHO05D006335 1.3e-116 423.7 318 69.8
CARHR193800 Cardamine hirsuta HOM05D004989 ORTHO05D006335 1.7e-116 423.3 313 69.3
Aa31LG11G10490 Aethionema arabicum HOM05D004989 ORTHO05D006335 2.9e-116 422.5 317 69.7
Gohir.D02G037100 Gossypium hirsutum HOM05D004989 ORTHO05D006335 2.9e-116 422.5 318 69.5
Hund12013 Selenicereus undatus HOM05D004989 ORTHO05D006335 2.9e-116 422.5 266 76.3
Sp6g25210 Schrenkiella parvula HOM05D004989 ORTHO05D006335 3.8e-116 422.2 313 68.4
AT5G19150 Arabidopsis thaliana HOM05D004989 ORTHO05D006335 5.0e-116 421.8 313 71.2
Solyc01g079860.3 Solanum lycopersicum HOM05D004989 ORTHO05D006335 5.0e-116 421.8 265 76.2
Sopen01g031620 Solanum pennellii HOM05D004989 ORTHO05D006335 5.0e-116 421.8 265 75.8
BcaB01g04874 Brassica carinata HOM05D004989 ORTHO05D006335 6.5e-116 421.4 313 68.4
Phvul.003G091700 Phaseolus vulgaris HOM05D004989 ORTHO05D006335 6.5e-116 421.4 263 76.8
Lj6A574T37 Lonicera japonica HOM05D004989 ORTHO05D006335 8.5e-116 421.0 244 83.2
RcHm_v2.0_Chr0c32g0501661 Rosa chinensis HOM05D004989 ORTHO05D006335 1.4e-115 420.2 310 71.0
BolC3t13560H Brassica oleracea HOM05D004989 ORTHO05D006335 2.5e-115 419.5 313 68.7
FAN17G0130 Fragaria x ananassa HOM05D004989 ORTHO05D006335 2.5e-115 419.5 318 68.9
BraA03t10257Z Brassica rapa HOM05D004989 ORTHO05D006335 7.2e-115 417.9 326 66.0
Psat1g182800 Pisum sativum HOM05D004989 ORTHO05D006335 7.2e-115 417.9 264 79.5
ATR0743G104 Amborella trichopoda HOM05D004989 ORTHO05D006335 1.6e-114 416.8 327 63.9
HPP92_005520 Vanilla planifolia HOM05D004989 ORTHO05D006335 1.0e-113 414.1 295 71.2
Sabra08G0157900 Salix brachista HOM05D004989 ORTHO05D006335 1.4e-113 413.7 352 62.2
CDE07G1289 Ceratophyllum demersum HOM05D004989 ORTHO05D006335 1.8e-113 413.3 310 68.4
Os11g0276300 Oryza sativa ssp. japonica HOM05D004989 ORTHO05D006335 1.8e-113 413.3 307 67.4
C03p10950 Brassica napus HOM05D004989 ORTHO05D006335 3.9e-113 412.1 322 66.1
COL.COLO4_26626 Corchorus olitorius HOM05D004989 ORTHO05D006335 3.9e-113 412.1 362 60.5
BcaB01g05136 Brassica carinata HOM05D004989 ORTHO05D006335 5.1e-113 411.8 313 67.4
C03p10960 Brassica napus HOM05D004989 ORTHO05D006335 6.7e-113 411.4 322 65.2
PSO478G2898 Papaver somniferum HOM05D004989 ORTHO05D006335 8.8e-113 411.0 255 78.8
Haze_00947 Corylus avellana HOM05D004989 ORTHO05D006335 1.5e-112 410.2 322 66.5
Rhsim02G0020900 Rhododendron simsii HOM05D004989 ORTHO05D006335 4.3e-112 408.7 334 63.8
unitig_736.g22488 Utricularia gibba HOM05D004989 ORTHO05D006335 8.2e-111 404.4 296 67.6
Nitab4.5_0005927g0020 Nicotiana tabacum HOM05D004989 ORTHO05D006335 2.4e-110 402.9 326 64.4
BraA02t05485Z Brassica rapa HOM05D004989 ORTHO05D006335 4.1e-110 402.1 265 74.0
A02p05270 Brassica napus HOM05D004989 ORTHO05D006335 1.2e-109 400.6 264 73.1
FAN22G1009 Fragaria x ananassa HOM05D004989 ORTHO05D006335 2.0e-109 399.8 317 66.9
Zm00001eb168810 Zea mays HOM05D004989 ORTHO05D006335 5.9e-109 398.3 260 73.5
BcaC03g13646 Brassica carinata HOM05D004989 ORTHO05D006335 1.3e-108 397.1 264 72.7
C02p10390 Brassica napus HOM05D004989 ORTHO05D006335 1.3e-108 397.1 264 72.7
BolC2t06940H Brassica oleracea HOM05D004989 ORTHO05D006335 1.3e-108 397.1 264 72.7
Nitab4.5_0000630g0050 Nicotiana tabacum HOM05D004989 ORTHO05D006335 1.7e-108 396.7 236 81.4
BcaB05g23373 Brassica carinata HOM05D004989 ORTHO05D006335 5.0e-108 395.2 265 72.8
PGSC0003DMG400009024 Solanum tuberosum HOM05D004989 ORTHO05D006335 2.5e-107 392.9 238 79.0
RcHm_v2.0_Chr0c32g0501471 Rosa chinensis HOM05D004989 ORTHO05D006335 3.6e-106 389.0 305 67.5
Oeu042787.2 Olea europaea HOM05D004989 ORTHO05D006335 3.0e-105 386.0 370 55.9
TWI73G0966 Tripterygium wilfordii HOM05D004989 ORTHO05D006335 1.3e-103 380.6 317 63.1
RcHm_v2.0_Chr3g0483801 Rosa chinensis HOM05D004989 ORTHO05D006335 3.7e-103 379.0 232 81.0
Actinidia36991 Actinidia chinensis HOM05D004989 ORTHO05D006335 8.2e-103 377.9 297 67.3
Lj6g0017812 Lotus japonicus HOM05D004989 ORTHO05D006335 3.9e-97 359.0 257 70.4
SHI00391 Sapria himalayana HOM05D004989 ORTHO05D006335 1.5e-96 357.1 290 64.1
ClCG05G005360 Citrullus lanatus HOM05D004989 ORTHO05D006335 6.3e-95 351.7 241 73.4
Hma1.2p1_2553F.1_g324330 Hydrangea macrophylla HOM05D004989 ORTHO05D006335 1.1e-94 350.9 212 81.1
Mapoly0063s0079 Marchantia polymorpha HOM05D004989 ORTHO05D006335 1.9e-91 340.1 263 63.1
SMO361G0104 Selaginella moellendorffii HOM05D004989 ORTHO05D006335 1.2e-88 330.9 264 62.9
SGA_v2.0_scaffold39G15320 Striga asiatica HOM05D004989 ORTHO05D006335 1.2e-88 330.9 198 81.3
CBR_g26053 Chara braunii HOM05D004989 ORTHO05D006335 2.8e-87 326.2 272 59.6
C03p10860 Brassica napus HOM05D004989 ORTHO05D006335 1.9e-83 313.5 281 59.4
C03p10910 Brassica napus HOM05D004989 ORTHO05D006335 4.2e-83 312.4 207 72.9
FAN07G2774 Fragaria x ananassa HOM05D004989 ORTHO05D006335 9.8e-80 301.2 265 61.9
BcaB01g05294 Brassica carinata HOM05D004989 ORTHO05D006335 1.5e-75 287.3 288 54.9
PGR142G2933 Punica granatum HOM05D004989 ORTHO05D006335 7.2e-75 285.0 315 53.0
Hma1.2p1_2553F.1_g324320 Hydrangea macrophylla HOM05D004989 ORTHO05D006335 9.5e-75 284.6 198 73.7
Duzib151G0886 Durio zibethinus HOM05D004989 ORTHO05D006335 4.7e-74 282.3 318 51.9
TPR.G28611 Trifolium pratense HOM05D004989 ORTHO05D006739 1.4e-73 280.8 176 78.4
AagrBONN_evm.TU.Sc2ySwM_344.1251 Anthoceros agrestis HOM05D004989 ORTHO05D006335 2.0e-72 276.9 279 52.3
HPP92_005588 Vanilla planifolia HOM05D004989 ORTHO05D006335 7.5e-72 275.0 233 63.1
Pp3c8_1650 Physcomitrium patens HOM05D004989 ORTHO05D006335 2.2e-71 273.5 226 60.6
arahy.Tifrunner.gnm1.ann1.BS3LH0 Arachis hypogaea HOM05D004989 ORTHO05D006335 3.2e-62 243.0 328 46.0
Ca_00654_v3 Cicer arietinum L. HOM05D004989 ORTHO05D006335 7.8e-61 238.4 198 65.2
Cpa.g.sc147.7 Carica papaya HOM05D004989 ORTHO05D006335 1.9e-59 233.8 177 68.4
TPR.G30683 Trifolium pratense HOM05D004989 ORTHO05D006335 3.3e-59 233.0 164 72.0
Cre06.g250500 Chlamydomonas reinhardtii HOM05D004989 ORTHO05D006335 1.8e-57 227.3 269 43.1
Hma1.2p1_0995F.1_g245810 Hydrangea macrophylla HOM05D004989 ORTHO05D006335 4.0e-57 226.1 166 70.5
Hund03167 Selenicereus undatus HOM05D004989 ORTHO05D006335 1.7e-52 210.7 122 81.1
SEGI_07547 Sequoiadendron giganteum HOM05D004989 ORTHO05D006335 5.6e-51 205.7 185 56.2
MCO05G313 Micromonas commoda HOM05D004989 ORTHO05D006335 1.2e-50 204.5 271 43.2
SEGI_27897 Sequoiadendron giganteum HOM05D004989 ORTHO05D006335 8.1e-50 201.8 124 74.2
Haze_26760 Corylus avellana HOM05D004980 ORTHO05D006505 2.0e-48 197.2 262 43.5
arahy.Tifrunner.gnm1.ann1.J5ZRE9 Arachis hypogaea HOM05D004989 ORTHO05D006335 1.7e-47 194.1 127 74.0
PRCOL_00001617 Prasinoderma coloniale HOM05D004989 ORTHO05D006335 2.9e-47 193.4 299 40.1
Atru.chr4.2545 Acer truncatum HOM05D004989 ORTHO05D006335 1.9e-46 190.7 152 63.2
arahy.Tifrunner.gnm1.ann1.HR1U72 Arachis hypogaea HOM05D004989 ORTHO05D006335 7.1e-46 188.7 119 77.3
Cfa024379 Carpinus fangiana HOM05D004989 ORTHO05D006335 2.7e-45 186.8 231 41.1
SEGI_35556 Sequoiadendron giganteum HOM05D004989 ORTHO05D006335 1.1e-41 174.9 152 61.2
Cre05.g234664 Chlamydomonas reinhardtii HOM05D004989 ORTHO05D006335 4.0e-41 172.9 325 35.4
SEGI_12399 Sequoiadendron giganteum HOM05D004989 ORTHO05D006335 7.8e-37 158.7 129 64.3
Atru.chr4.2547 Acer truncatum HOM05D004989 ORTHO05D000586 1.6e-34 151.0 112 67.0
Cfa015379 Carpinus fangiana HOM05D000407 ORTHO05D002981 4.9e-31 139.4 159 50.9
Cpa.g.sc147.6 Carica papaya HOM05D004989 ORTHO05D006335 9.9e-24 115.2 69 78.3
CBR_g19747 Chara braunii HOM05D000409 ORTHO05D000184 7.1e-22 109.0 93 57.0
Actinidia08511 Actinidia chinensis HOM05D004989 ORTHO05D006335 5.1e-12 76.3 44 79.5
TPR.G30666 Trifolium pratense HOM05D004989 ORTHO05D006335 3.8e-07 60.1 39 69.2
Cpa.g.sc147.5 Carica papaya HOM05D004989 ORTHO05D006335 1.4e-06 58.2 43 65.1


User provided reference genes

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