Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc13g0003510 Simmondsia chinensis HOM05D006081 ORTHO05D007628 1.3e-103 379.8 193 100.0
Cc00_g10580 Coffea canephora HOM05D006081 ORTHO05D007628 3.8e-52 208.8 189 57.1
Prupe.1G138200 Prunus persica HOM05D006081 ORTHO05D007628 5.5e-51 204.9 199 56.8
Actinidia40266 Actinidia chinensis HOM05D006081 ORTHO05D007628 1.0e-49 200.7 188 58.5
Dinv29771 Davidia involucrata HOM05D006081 ORTHO05D007628 1.0e-49 200.7 189 57.1
FAN07G2255 Fragaria x ananassa HOM05D006081 ORTHO05D007628 1.8e-49 199.9 187 55.1
CSS0030149 Camellia sinensis var. sinensis HOM05D006081 ORTHO05D007628 3.0e-49 199.1 189 56.6
Rhsim04G0220300 Rhododendron simsii HOM05D006081 ORTHO05D007628 3.0e-49 199.1 190 57.4
Cfa015373 Carpinus fangiana HOM05D006081 ORTHO05D007628 6.8e-49 198.0 190 54.7
FvH4_4g17860 Fragaria vesca HOM05D006081 ORTHO05D007628 1.2e-48 197.2 187 54.5
Cpa.g.sc16.161 Carica papaya HOM05D006081 ORTHO05D007628 1.5e-48 196.8 189 54.5
vmacro08134 Vaccinium macrocarpon HOM05D006081 ORTHO05D007628 2.0e-48 196.4 191 57.6
CiPaw.01G149700 Carya illinoinensis HOM05D006081 ORTHO05D007628 2.6e-48 196.1 193 54.9
CiPaw.02G083900 Carya illinoinensis HOM05D006081 ORTHO05D007628 4.4e-48 195.3 193 56.5
PGSC0003DMG400022662 Solanum tuberosum HOM05D006081 ORTHO05D007628 4.4e-48 195.3 188 55.3
Thecc.04G283000 Theobroma cacao HOM05D006081 ORTHO05D007628 4.4e-48 195.3 188 55.3
FAN12G2613 Fragaria x ananassa HOM05D006081 ORTHO05D007628 5.7e-48 194.9 187 54.0
Gohir.D02G054100 Gossypium hirsutum HOM05D006081 ORTHO05D007628 5.7e-48 194.9 185 56.8
Gorai.005G059600 Gossypium raimondii HOM05D006081 ORTHO05D007628 5.7e-48 194.9 185 56.8
PGR031G1107 Punica granatum HOM05D006081 ORTHO05D007628 5.7e-48 194.9 190 56.8
arahy.Tifrunner.gnm1.ann1.TA2ZSY Arachis hypogaea HOM05D006081 ORTHO05D007628 9.7e-48 194.1 191 54.5
Phvul.009G246800 Phaseolus vulgaris HOM05D006081 ORTHO05D007628 1.3e-47 193.7 194 53.6
VMungo1309G0529 Vigna mungo HOM05D006081 ORTHO05D007628 1.3e-47 193.7 194 53.6
Duzib151G0152 Durio zibethinus HOM05D006081 ORTHO05D007628 3.7e-47 192.2 187 55.6
GSVIVG01017744001 Vitis vinifera HOM05D006081 ORTHO05D007628 3.7e-47 192.2 192 53.6
Lj6g0000146 Lotus japonicus HOM05D006081 ORTHO05D007628 4.8e-47 191.8 194 54.6
EL10Ac3g06586 Beta vulgaris HOM05D006081 ORTHO05D007628 6.3e-47 191.4 191 53.4
Potri.008G210100 Populus trichocarpa HOM05D006081 ORTHO05D007628 6.3e-47 191.4 193 54.9
Atru.chr4.2827 Acer truncatum HOM05D006081 ORTHO05D007628 8.3e-47 191.0 195 51.8
TAR636G3617 Trochodendron aralioides HOM05D006081 ORTHO05D007628 8.3e-47 191.0 194 54.6
FAN17G1774 Fragaria x ananassa HOM05D006081 ORTHO05D007628 1.1e-46 190.7 187 52.4
RcHm_v2.0_Chr4g0421971 Rosa chinensis HOM05D006081 ORTHO05D007628 1.1e-46 190.7 195 54.4
Gohir.A02G048800 Gossypium hirsutum HOM05D006081 ORTHO05D007628 1.4e-46 190.3 185 56.8
Medtr2g436940 Medicago truncatula HOM05D006081 ORTHO05D007628 1.4e-46 190.3 198 53.0
Glyma.15G153100 Glycine max HOM05D006081 ORTHO05D007628 3.1e-46 189.1 202 51.5
arahy.Tifrunner.gnm1.ann1.EZB5Q6 Arachis hypogaea HOM05D006081 ORTHO05D007628 5.3e-46 188.3 191 52.9
Eucgr.H03897 Eucalyptus grandis HOM05D006081 ORTHO05D007628 5.3e-46 188.3 185 54.1
Lalb_Chr18g0051761 Lupinus albus HOM05D006081 ORTHO05D007628 5.3e-46 188.3 190 51.6
HanXRQChr03g0079991 Helianthus annuus HOM05D006081 ORTHO05D007628 7.0e-46 188.0 191 54.5
Manes.15G013500 Manihot esculenta HOM05D006081 ORTHO05D007628 7.0e-46 188.0 194 52.1
AUR62043167 Chenopodium quinoa HOM05D006081 ORTHO05D007628 1.6e-45 186.8 136 64.0
Sabra08G0154300 Salix brachista HOM05D006081 ORTHO05D007628 1.6e-45 186.8 192 52.1
SGA_v2.0_scaffold55G19699 Striga asiatica HOM05D006081 ORTHO05D007628 1.6e-45 186.8 198 52.0
MSTRG.21799 Avicennia marina HOM05D006081 ORTHO05D007628 2.0e-45 186.4 187 53.5
Migut.N00097 Erythranthe guttata HOM05D006081 ORTHO05D007628 2.0e-45 186.4 194 52.6
Nitab4.5_0003972g0010 Nicotiana tabacum HOM05D006081 ORTHO05D007628 2.0e-45 186.4 188 54.3
Peaxi162Scf00534g00212 Petunia axillaris HOM05D006081 ORTHO05D007628 5.9e-45 184.9 189 55.6
MD16G1171400 Malus domestica HOM05D006081 ORTHO05D007628 7.7e-45 184.5 188 54.8
ECA240G0281 Erigeron canadensis HOM05D006081 ORTHO05D007628 1.0e-44 184.1 193 53.4
Sopen01g028790 Solanum pennellii HOM05D006081 ORTHO05D007628 1.0e-44 184.1 188 52.1
THA.LOC104820251 Tarenaya hassleriana HOM05D006081 ORTHO05D007628 1.0e-44 184.1 190 52.6
ClCG06G005230 Citrullus lanatus HOM05D006081 ORTHO05D007628 1.3e-44 183.7 191 50.3
QL06p008580 Quercus lobata HOM05D006081 ORTHO05D007628 1.3e-44 183.7 191 52.4
Psat1g153280 Pisum sativum HOM05D006081 ORTHO05D007628 1.7e-44 183.3 194 51.5
Solyc01g067080.3 Solanum lycopersicum HOM05D006081 ORTHO05D007628 1.7e-44 183.3 188 52.1
Manes.03G194000 Manihot esculenta HOM05D006081 ORTHO05D007628 2.2e-44 183.0 194 51.0
Nitab4.5_0003749g0060 Nicotiana tabacum HOM05D006081 ORTHO05D007628 2.2e-44 183.0 192 53.1
Oeu027733.1 Olea europaea HOM05D006081 ORTHO05D007628 3.8e-44 182.2 187 51.9
Ca_01966_v3 Cicer arietinum L. HOM05D006081 ORTHO05D007628 1.1e-43 180.6 194 49.5
Glyma.09G045900 Glycine max HOM05D006081 ORTHO05D007628 1.1e-43 180.6 195 51.8
Lalb_Chr20g0114491 Lupinus albus HOM05D006081 ORTHO05D007628 1.1e-43 180.6 185 51.9
CANSAT78G1428 Cannabis sativa HOM05D006081 ORTHO05D007628 4.2e-43 178.7 193 50.3
Ciclev10005978m.g Citrus clementina HOM05D006081 ORTHO05D007628 4.2e-43 178.7 191 52.4
PSO210G2816 Papaver somniferum HOM05D006081 ORTHO05D007628 4.2e-43 178.7 195 49.2
Lsat_1_v5_gn_5_49301 Lactuca sativa HOM05D006081 ORTHO05D007628 7.2e-43 177.9 183 53.6
SalBow5G1281 Salvia bowleyana HOM05D006081 ORTHO05D007628 7.2e-43 177.9 198 49.0
CsaV3_6G017270 Cucumis sativus L. HOM05D006081 ORTHO05D007628 1.6e-42 176.8 193 49.2
MELO3C021343.2 Cucumis melo HOM05D006081 ORTHO05D007628 6.1e-42 174.9 193 49.7
PSO170G3586 Papaver somniferum HOM05D006081 ORTHO05D007628 6.1e-42 174.9 195 47.2
AUR62036825 Chenopodium quinoa HOM05D006081 ORTHO05D007628 8.0e-42 174.5 135 61.5
Lj6A673G88 Lonicera japonica HOM05D006081 ORTHO05D007628 8.0e-42 174.5 129 65.1
DCAR_030534 Daucus carota HOM05D006081 ORTHO05D007628 1.4e-41 173.7 189 50.8
CARHR097370 Cardamine hirsuta HOM05D006081 ORTHO05D007628 3.0e-41 172.6 195 48.2
MBI19_g30830_MAGBIO Magnolia biondii HOM05D006081 ORTHO05D007628 3.0e-41 172.6 195 46.2
Thhalv10021583m.g Eutrema salsugineum HOM05D006081 ORTHO05D007628 5.2e-41 171.8 194 50.0
Sed0014998 Sechium edule HOM05D006081 ORTHO05D007628 6.8e-41 171.4 192 49.5
TWI53G0242 Tripterygium wilfordii HOM05D006081 ORTHO05D007628 1.5e-40 170.2 190 48.9
Aa31LG8G8110 Aethionema arabicum HOM05D006081 ORTHO05D007628 2.0e-40 169.9 195 48.2
Sp3g19430 Schrenkiella parvula HOM05D006081 ORTHO05D007628 3.4e-40 169.1 197 50.3
Oeu023291.2 Olea europaea HOM05D006081 ORTHO05D007628 5.7e-40 168.3 227 43.6
AT3G21400 Arabidopsis thaliana HOM05D006081 ORTHO05D007628 2.8e-39 166.0 194 48.5
BcaC05g28170 Brassica carinata HOM05D006081 ORTHO05D007628 2.8e-39 166.0 191 50.3
C05p42070 Brassica napus HOM05D006081 ORTHO05D007628 2.8e-39 166.0 191 50.3
BolC5t32937H Brassica oleracea HOM05D006081 ORTHO05D007628 2.8e-39 166.0 191 50.3
TAR365G0221 Trochodendron aralioides HOM05D006081 ORTHO05D007628 3.7e-39 165.6 174 53.4
BcaC01g03506 Brassica carinata HOM05D006081 ORTHO05D007628 6.3e-39 164.9 198 48.0
BolC3t17454H Brassica oleracea HOM05D006081 ORTHO05D007628 6.3e-39 164.9 198 48.0
C03p51690 Brassica napus HOM05D006081 ORTHO05D007628 8.3e-39 164.5 194 47.9
AL3G35480 Arabidopsis lyrata HOM05D006081 ORTHO05D007628 1.4e-38 163.7 194 47.4
Carub.0003s2143 Capsella rubella HOM05D006081 ORTHO05D007628 1.4e-38 163.7 200 48.0
FAN12G2474 Fragaria x ananassa HOM05D006081 ORTHO05D007628 2.4e-38 162.9 112 67.9
BcaB04g19166 Brassica carinata HOM05D006081 ORTHO05D007628 1.2e-37 160.6 196 46.9
TPR.G26808 Trifolium pratense HOM05D006081 ORTHO05D007628 2.0e-37 159.8 154 53.2
BraA03t13376Z Brassica rapa HOM05D006081 ORTHO05D007628 3.5e-37 159.1 196 48.5
unitig_26.g10542 Utricularia gibba HOM05D006081 ORTHO05D007628 5.9e-37 158.3 180 48.3
A03p42230 Brassica napus HOM05D006081 ORTHO05D007628 1.0e-36 157.5 194 47.4
BcaB06g26235 Brassica carinata HOM05D006081 ORTHO05D007628 1.3e-36 157.1 191 47.6
CDE02G2676 Ceratophyllum demersum HOM05D006081 ORTHO05D000739 4.2e-35 152.1 196 44.4
CDE09G1305 Ceratophyllum demersum HOM05D006081 ORTHO05D007628 2.1e-34 149.8 196 43.4
CAN.G556.12 Capsicum annuum HOM05D006081 ORTHO05D007628 1.4e-33 147.1 111 64.9
CSS0018730 Camellia sinensis var. sinensis HOM05D006081 ORTHO05D007628 1.8e-33 146.7 113 59.3
BraA05t21612Z Brassica rapa HOM05D006081 ORTHO05D007628 2.3e-33 146.4 171 49.1
A05p27230 Brassica napus HOM05D006081 ORTHO05D007628 1.5e-32 143.7 171 48.5
ATR0706G092 Amborella trichopoda HOM05D006081 ORTHO05D007628 2.0e-32 143.3 125 59.2
Aqoxy2G03026 Aquilegia oxysepala HOM05D006081 ORTHO05D007628 1.3e-31 140.6 126 54.8
AUR62038616 Chenopodium quinoa HOM05D006081 ORTHO05D007628 6.3e-31 138.3 95 65.3
Os12g0540700 Oryza sativa ssp. japonica HOM05D006081 ORTHO05D007628 1.6e-29 133.7 194 42.3
SEGI_25455 Sequoiadendron giganteum HOM05D006081 ORTHO05D007628 1.0e-28 131.0 185 43.2
Zm00001eb410420 Zea mays HOM05D006081 ORTHO05D007628 1.1e-27 127.5 189 39.2
TAR365G0700 Trochodendron aralioides HOM05D006081 ORTHO05D007628 2.6e-24 116.3 94 58.5
Haze_01224 Corylus avellana HOM05D006081 ORTHO05D007628 9.8e-24 114.4 77 63.6
HPP92_001321 Vanilla planifolia HOM05D006081 ORTHO05D007628 2.9e-23 112.8 177 40.1
Actinidia01470 Actinidia chinensis HOM05D006081 ORTHO05D007628 3.7e-23 112.5 196 41.8
MBI19_g12810_MAGBIO Magnolia biondii HOM05D006081 ORTHO05D007628 1.6e-21 107.1 97 45.4
MD13G1169900 Malus domestica HOM05D006081 ORTHO05D007628 9.5e-19 97.8 130 49.2
CSS0011440 Camellia sinensis var. sinensis HOM05D006081 ORTHO05D007628 1.2e-18 97.4 110 50.0
Pp3c1_29830 Physcomitrium patens HOM05D006081 ORTHO05D007628 6.2e-18 95.1 180 36.7
Mapoly0041s0011 Marchantia polymorpha HOM05D006081 ORTHO05D007628 3.1e-17 92.8 159 35.8
Potri.010G024000 Populus trichocarpa HOM05D006081 ORTHO05D007628 4.4e-16 89.0 72 52.8
AagrBONN_evm.TU.Sc2ySwM_368.2309 Anthoceros agrestis HOM05D006081 ORTHO05D007628 5.8e-16 88.6 131 35.9
Haze_01225 Corylus avellana HOM05D006081 ORTHO05D007628 3.9e-12 75.9 96 47.9
CBR_g29894 Chara braunii HOM05D008095 ORTHO05D010826 1.2e-10 70.9 115 33.0
FAN22G0279 Fragaria x ananassa HOM05D006081 ORTHO05D007628 5.2e-09 65.5 93 43.0
Nn5g30060 Nelumbo nucifera HOM05D006081 ORTHO05D007628 2.0e-08 63.5 103 45.6


User provided reference genes

Program Settings