Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc13g0001660 Simmondsia chinensis HOM05D006503 ORTHO05D008116 2.3e-199 699.9 810 100.0
AUR62038078 Chenopodium quinoa HOM05D006503 ORTHO05D008116 2.5e-84 317.8 764 77.2
CSS0000010 Camellia sinensis var. sinensis HOM05D006503 ORTHO05D008116 2.7e-83 314.3 786 75.8
Lju124C42T22 Lonicera japonica HOM05D006503 ORTHO05D008116 2.8e-80 304.3 794 71.5
Thecc.09G181100 Theobroma cacao HOM05D006503 ORTHO05D008116 1.8e-79 301.6 784 73.1
Ciclev10004347m.g Citrus clementina HOM05D006503 ORTHO05D008116 3.0e-74 284.3 790 71.5
Manes.09G020600 Manihot esculenta HOM05D006503 ORTHO05D008116 7.4e-73 279.6 748 76.7
MD05G1241300 Malus domestica HOM05D006503 ORTHO05D008116 6.9e-71 273.1 782 68.8
Atru.BG.180.p Acer truncatum HOM05D006503 ORTHO05D008116 2.6e-70 271.2 747 56.4
Cfa017777 Carpinus fangiana HOM05D006503 ORTHO05D008116 2.6e-70 271.2 754 73.1
QL04p096113 Quercus lobata HOM05D006503 ORTHO05D008116 2.6e-70 271.2 754 72.9
Rhsim04G0102600 Rhododendron simsii HOM05D006503 ORTHO05D008116 3.4e-70 270.8 787 72.0
Duzib150G0906 Durio zibethinus HOM05D006503 ORTHO05D008116 1.3e-69 268.9 788 71.1
QL04p096294 Quercus lobata HOM05D006503 ORTHO05D008116 3.8e-69 267.3 754 73.6
AUR62038172 Chenopodium quinoa HOM05D006503 ORTHO05D008116 8.5e-69 266.2 697 80.6
COL.COLO4_08106 Corchorus olitorius HOM05D006503 ORTHO05D008116 1.6e-67 261.9 724 73.6
Hma1.2p1_1041F.1_g251090 Hydrangea macrophylla HOM05D006503 ORTHO05D008116 1.6e-67 261.9 770 64.7
RcHm_v2.0_Chr5g0022901 Rosa chinensis HOM05D006503 ORTHO05D008116 2.1e-67 261.5 749 72.1
CAN.G1274.14 Capsicum annuum HOM05D006503 ORTHO05D008116 1.4e-66 258.8 748 71.7
Dinv36159 Davidia involucrata HOM05D006503 ORTHO05D008116 3.9e-66 257.3 692 77.9
CiPaw.15G110400 Carya illinoinensis HOM05D006503 ORTHO05D008116 5.1e-66 256.9 747 62.7
TWI77G0486 Tripterygium wilfordii HOM05D006503 ORTHO05D008116 1.1e-65 255.8 792 68.3
Potri.006G049400 Populus trichocarpa HOM05D006503 ORTHO05D008116 2.6e-65 254.6 799 69.6
Prupe.4G124200 Prunus persica HOM05D006503 ORTHO05D008116 9.7e-65 252.7 782 70.7
FvH4_3g13661 Fragaria vesca HOM05D006503 ORTHO05D008116 1.3e-64 252.3 721 74.5
Sed0013522 Sechium edule HOM05D006503 ORTHO05D008116 2.2e-64 251.5 748 68.7
MSTRG.6424 Avicennia marina HOM05D006503 ORTHO05D008116 1.4e-63 248.8 755 70.5
Nitab4.5_0002332g0010 Nicotiana tabacum HOM05D006503 ORTHO05D008116 1.2e-62 245.7 676 76.5
Oeu016352.1 Olea europaea HOM05D006503 ORTHO05D008116 1.5e-62 245.4 760 71.8
CANSAT21G0513 Cannabis sativa HOM05D006503 ORTHO05D008116 3.4e-62 244.2 752 71.8
ClCG02G018860 Citrullus lanatus HOM05D006503 ORTHO05D008116 3.4e-62 244.2 757 70.4
Cc06_g17640 Coffea canephora HOM05D006503 ORTHO05D008116 2.9e-61 241.1 758 70.3
TAR633G2684 Trochodendron aralioides HOM05D000623 ORTHO05D008116 5.0e-61 240.4 695 77.0
ECA248G2018 Erigeron canadensis HOM05D006503 ORTHO05D008116 1.1e-60 239.2 745 71.7
Nn5g26957 Nelumbo nucifera HOM05D006503 ORTHO05D008116 1.4e-60 238.8 760 76.3
Migut.J01751 Erythranthe guttata HOM05D006503 ORTHO05D008116 1.8e-58 231.9 782 67.6
THA.LOC104808133 Tarenaya hassleriana HOM05D006503 ORTHO05D008116 1.3e-56 225.7 785 62.4
HanXRQChr13g0395951 Helianthus annuus HOM05D006503 ORTHO05D008116 3.7e-56 224.2 784 69.1
TAR633G2474 Trochodendron aralioides HOM05D006503 ORTHO05D008116 4.8e-56 223.8 753 74.0
GSVIVG01033259001 Vitis vinifera HOM05D006503 ORTHO05D008116 6.3e-56 223.4 753 63.1
Sopen02g028560 Solanum pennellii HOM05D006503 ORTHO05D008116 1.8e-55 221.9 748 69.8
Peaxi162Scf00020g00194 Petunia axillaris HOM05D006503 ORTHO05D008116 2.6e-54 218.0 315 61.9
PGSC0003DMG401003570 Solanum tuberosum HOM05D006503 ORTHO05D008116 2.6e-54 218.0 748 69.7
SalBow6G5105 Salvia bowleyana HOM05D006503 ORTHO05D008116 1.3e-53 215.7 752 66.1
Actinidia38544 Actinidia chinensis HOM05D006503 ORTHO05D008116 1.7e-53 215.3 321 67.3
SHI16040 Sapria himalayana HOM05D006503 ORTHO05D008116 1.9e-52 211.8 747 61.6
Lsat_1_v5_gn_5_161280 Lactuca sativa HOM05D006503 ORTHO05D008116 2.5e-52 211.5 738 61.4
MELO3C019605.2 Cucumis melo HOM05D006503 ORTHO05D008116 2.7e-51 208.0 768 59.2
C02p36700 Brassica napus HOM05D006503 ORTHO05D008116 4.7e-51 207.2 783 59.4
CsaV3_6G013320 Cucumis sativus L. HOM05D006503 ORTHO05D008116 1.4e-50 205.7 764 68.6
BcaC03g15903 Brassica carinata HOM05D006503 ORTHO05D008116 2.3e-50 204.9 783 59.3
BolC2t09665H Brassica oleracea HOM05D006503 ORTHO05D008116 2.3e-50 204.9 783 59.3
Carub.0002s2640 Capsella rubella HOM05D006503 ORTHO05D008116 6.7e-50 203.4 783 61.4
Sp5g34600 Schrenkiella parvula HOM05D006503 ORTHO05D008116 4.4e-49 200.7 787 59.8
Sabra06G0034600 Salix brachista HOM05D006503 ORTHO05D008116 5.7e-49 200.3 770 60.0
vmacro09073 Vaccinium macrocarpon HOM05D006503 ORTHO05D008116 5.7e-49 200.3 603 83.4
BraA02t07289Z Brassica rapa HOM05D006503 ORTHO05D008116 9.7e-49 199.5 783 58.9
A02p22890 Brassica napus HOM05D006503 ORTHO05D008116 2.2e-48 198.4 783 58.9
Aa31LG4G1470 Aethionema arabicum HOM05D006503 ORTHO05D008116 4.8e-48 197.2 789 58.0
Thhalv10018150m.g Eutrema salsugineum HOM05D006503 ORTHO05D008116 4.8e-48 197.2 783 59.4
Actinidia17234 Actinidia chinensis HOM05D006503 ORTHO05D008116 6.3e-48 196.8 187 49.7
Ah.13g074010 Amaranthus hybridus HOM05D006503 ORTHO05D008116 1.8e-47 195.3 730 71.8
CSS0042104 Camellia sinensis var. sinensis HOM05D006503 ORTHO05D008116 7.0e-47 193.4 184 54.9
AT1G79540 Arabidopsis thaliana HOM05D006503 ORTHO05D008116 2.7e-46 191.4 783 57.3
CARHR036700 Cardamine hirsuta HOM05D006503 ORTHO05D008116 2.7e-46 191.4 772 59.6
Solyc02g083780.3 Solanum lycopersicum HOM05D002880 ORTHO05D008116 7.7e-46 189.9 674 74.0
SGA_v2.0_scaffold10G05267 Striga asiatica HOM05D006503 ORTHO05D008116 1.0e-45 189.5 712 70.2
Aqoxy2G03029 Aquilegia oxysepala HOM05D006503 ORTHO05D008116 1.7e-45 188.7 776 67.8
AL2G40180 Arabidopsis lyrata HOM05D006503 ORTHO05D008116 3.8e-45 187.6 783 56.6
PGR004G2741 Punica granatum HOM05D006503 ORTHO05D008116 4.2e-44 184.1 675 75.3
BcaB05g25205 Brassica carinata HOM05D006503 ORTHO05D008116 7.2e-44 183.3 752 60.5
ATR0561G112 Amborella trichopoda HOM05D006503 ORTHO05D008116 3.6e-43 181.0 766 64.4
arahy.Tifrunner.gnm1.ann1.97ANKK Arachis hypogaea HOM05D006503 ORTHO05D008116 4.7e-43 180.6 315 52.7
DCAR_022897 Daucus carota HOM05D006503 ORTHO05D008116 6.1e-43 180.3 737 72.3
arahy.Tifrunner.gnm1.ann1.ER6M1I Arachis hypogaea HOM05D006503 ORTHO05D008116 8.0e-43 179.9 315 51.1
arahy.Tifrunner.gnm1.ann1.YC2S1L Arachis hypogaea HOM05D006503 ORTHO05D008116 8.0e-43 179.9 315 51.1
arahy.Tifrunner.gnm1.ann1.GW2J4P Arachis hypogaea HOM05D006503 ORTHO05D008116 1.8e-42 178.7 303 52.1
arahy.Tifrunner.gnm1.ann1.RL700P Arachis hypogaea HOM05D006503 ORTHO05D008116 4.0e-42 177.6 324 51.9
Eucgr.A02340 Eucalyptus grandis HOM05D006503 ORTHO05D008116 6.8e-42 176.8 792 53.9
Ca_06133_v3 Cicer arietinum L. HOM05D006503 ORTHO05D008116 1.2e-41 176.0 240 65.4
Gohir.D04G006500 Gossypium hirsutum HOM05D006503 ORTHO05D008116 2.0e-41 175.3 188 48.4
Gorai.012G007700 Gossypium raimondii HOM05D006503 ORTHO05D008116 2.0e-41 175.3 188 48.4
arahy.Tifrunner.gnm1.ann1.KC4DMY Arachis hypogaea HOM05D006503 ORTHO05D008116 5.7e-41 173.7 303 53.5
Cpa.g.sc32.63 Carica papaya HOM05D006503 ORTHO05D008116 2.2e-40 171.8 141 56.7
Gohir.A05G408900 Gossypium hirsutum HOM05D006503 ORTHO05D008116 2.8e-40 171.4 187 47.1
Lalb_Chr13g0292411 Lupinus albus HOM05D006503 ORTHO05D008116 4.8e-40 170.6 315 47.3
Lj6g0025212 Lotus japonicus HOM05D006503 ORTHO05D008116 1.1e-39 169.5 301 65.4
SalBow6G4098 Salvia bowleyana HOM05D006503 ORTHO05D008116 4.5e-38 164.1 752 64.0
Nitab4.5_0000051g0090 Nicotiana tabacum HOM05D006503 ORTHO05D008116 1.0e-37 162.9 154 48.1
Psat5g067680 Pisum sativum HOM05D006503 ORTHO05D008116 1.1e-36 159.5 316 54.1
TAR629G2271 Trochodendron aralioides HOM05D006503 ORTHO05D008116 1.5e-36 159.1 228 58.3
VMungo1309G1456 Vigna mungo HOM05D006503 ORTHO05D008116 2.5e-36 158.3 306 46.4
Hund03989 Selenicereus undatus HOM05D006503 ORTHO05D008116 8.8e-34 149.8 189 75.1
arahy.Tifrunner.gnm1.ann1.1KXV0X Arachis hypogaea HOM05D006503 ORTHO05D008116 2.4e-31 141.7 239 49.4
Glyma.06G144800 Glycine max HOM05D006503 ORTHO05D008116 2.0e-30 138.7 309 50.5
VMungo1127G1467 Vigna mungo HOM05D006503 ORTHO05D008116 2.7e-30 138.3 302 51.7
Medtr5g018230 Medicago truncatula HOM05D006503 ORTHO05D008116 2.3e-29 135.2 330 39.1
Medtr5g039700 Medicago truncatula HOM05D006503 ORTHO05D008116 1.9e-28 132.1 330 38.8
HPP92_001414 Vanilla planifolia HOM05D006503 ORTHO05D008116 2.6e-25 121.7 318 47.8
arahy.Tifrunner.gnm1.ann1.J10LLE Arachis hypogaea HOM05D006503 ORTHO05D008116 4.4e-25 120.9 303 28.7
Os09g0110200 Oryza sativa ssp. japonica HOM05D006503 ORTHO05D008116 4.9e-24 117.5 316 49.1
HPP92_001421 Vanilla planifolia HOM05D006503 ORTHO05D008116 6.4e-24 117.1 317 47.0
CDE05G1884 Ceratophyllum demersum HOM05D006503 ORTHO05D008116 5.4e-23 114.0 247 29.6
TPR.G16108 Trifolium pratense HOM05D006503 ORTHO05D008116 1.6e-22 112.5 240 40.4
Zm00001eb221750 Zea mays HOM05D006503 ORTHO05D008116 7.8e-22 110.2 316 49.1
TPR.G29649 Trifolium pratense HOM05D006503 ORTHO05D008116 6.6e-21 107.1 283 45.6
Medtr8g463610 Medicago truncatula HOM05D006503 ORTHO05D008116 2.1e-19 102.1 213 43.2
SEGI_01901 Sequoiadendron giganteum HOM05D006503 ORTHO05D008116 2.1e-19 102.1 160 35.0
ATR0177G061 Amborella trichopoda HOM05D006503 ORTHO05D008116 5.8e-17 94.0 64 70.3
Phvul.009G141200 Phaseolus vulgaris HOM05D006503 ORTHO05D008116 8.3e-16 90.1 92 45.7
Glyma.04G221000 Glycine max HOM05D006503 ORTHO05D008116 1.2e-14 86.3 65 61.5
arahy.Tifrunner.gnm1.ann1.6F2C80 Arachis hypogaea HOM05D006503 ORTHO05D008116 1.8e-10 72.4 114 31.6
GSVIVG01028975001 Vitis vinifera HOM05D005770 ORTHO05D006702 2.3e-10 72.0 149 30.2
arahy.Tifrunner.gnm1.ann1.C3XHUQ Arachis hypogaea HOM05D006503 ORTHO05D008116 3.1e-10 71.6 72 40.3
MBI14_g24311_MAGBIO Magnolia biondii HOM05D006895 ORTHO05D008605 1.5e-09 69.3 179 26.3
ATR0177G045 Amborella trichopoda HOM05D006503 ORTHO05D008116 4.4e-09 67.8 52 55.8
AUR62013885 Chenopodium quinoa HOM05D000424 ORTHO05D000355 4.4e-09 67.8 130 27.7
SEGI_12141 Sequoiadendron giganteum HOM05D000424 ORTHO05D000355 4.4e-09 67.8 143 24.5
EL10Ac1g01607 Beta vulgaris HOM05D000424 ORTHO05D000355 5.8e-09 67.4 132 25.0
ATR0907G005 Amborella trichopoda HOM05D007661 ORTHO05D009671 7.5e-09 67.0 193 24.9
Cc09_g06050 Coffea canephora HOM05D000424 ORTHO05D000355 7.5e-09 67.0 126 29.4
ECA238G3774 Erigeron canadensis HOM05D000424 ORTHO05D000355 7.5e-09 67.0 141 27.0
TPR.G11576 Trifolium pratense HOM05D006503 ORTHO05D008116 7.5e-09 67.0 64 48.4
CDE09G0424 Ceratophyllum demersum HOM05D000069 ORTHO05D000355 9.9e-09 66.6 136 27.2
Sc26g0004470 Simmondsia chinensis HOM05D000424 ORTHO05D000355 9.9e-09 66.6 190 25.8
CDE02G3106 Ceratophyllum demersum HOM05D007661 ORTHO05D009671 1.3e-08 66.2 164 26.2
Nitab4.5_0003030g0120 Nicotiana tabacum HOM05D000424 ORTHO05D000355 1.3e-08 66.2 139 28.1
SEGI_17014 Sequoiadendron giganteum HOM05D005770 ORTHO05D006702 1.3e-08 66.2 140 25.7
SEGI_37272 Sequoiadendron giganteum HOM05D005770 ORTHO05D006702 1.3e-08 66.2 140 25.7
HanXRQChr06g0185091 Helianthus annuus HOM05D000424 ORTHO05D000355 2.2e-08 65.5 124 27.4
CAN.G134.133 Capsicum annuum HOM05D005770 ORTHO05D006702 2.9e-08 65.1 149 28.9
Gohir.D12G259000 Gossypium hirsutum HOM05D005770 ORTHO05D006702 2.9e-08 65.1 188 25.5
Gorai.008G277400 Gossypium raimondii HOM05D005770 ORTHO05D006702 2.9e-08 65.1 188 25.5
CiPaw.04G071100 Carya illinoinensis HOM05D005770 ORTHO05D006702 3.7e-08 64.7 193 25.9
AUR62036712 Chenopodium quinoa HOM05D000424 ORTHO05D000355 3.7e-08 64.7 130 28.5
Cc04_g11130 Coffea canephora HOM05D005770 ORTHO05D006702 3.7e-08 64.7 190 26.8
Peaxi162Scf01049g00009 Petunia axillaris HOM05D005770 ORTHO05D006702 3.7e-08 64.7 149 28.9
Sed0008807 Sechium edule HOM05D005770 ORTHO05D006702 3.7e-08 64.7 124 29.8
Gohir.A12G257700 Gossypium hirsutum HOM05D005770 ORTHO05D006702 4.9e-08 64.3 175 25.1
DCAR_010313 Daucus carota HOM05D005770 ORTHO05D006702 6.4e-08 63.9 149 27.5
Nn4g25527 Nelumbo nucifera HOM05D007409 ORTHO05D009264 6.4e-08 63.9 148 23.0
Solyc04g081950.4 Solanum lycopersicum HOM05D000424 ORTHO05D000355 8.3e-08 63.5 161 25.5
Sopen04g035590 Solanum pennellii HOM05D000424 ORTHO05D000355 8.3e-08 63.5 161 25.5
PSO063G2745 Papaver somniferum HOM05D007661 ORTHO05D009671 1.1e-07 63.2 153 23.5
SalBow1G4333 Salvia bowleyana HOM05D006400 ORTHO05D008039 1.1e-07 63.2 156 28.8
PGSC0003DMG400009885 Solanum tuberosum HOM05D000424 ORTHO05D000355 1.1e-07 63.2 161 25.5
Lsat_1_v5_gn_2_6800 Lactuca sativa HOM05D000424 ORTHO05D000355 1.4e-07 62.8 124 26.6
QL06p034135 Quercus lobata HOM05D006503 ORTHO05D008116 1.4e-07 62.8 184 50.0
Oeu056257.1 Olea europaea HOM05D005770 ORTHO05D006702 1.9e-07 62.4 122 28.7
PSO017G1759 Papaver somniferum HOM05D007661 ORTHO05D009671 1.9e-07 62.4 153 22.9
PSO170G0141 Papaver somniferum HOM05D000424 ORTHO05D000355 1.9e-07 62.4 134 26.9
FvH4_7g29500 Fragaria vesca HOM05D005770 ORTHO05D006702 2.4e-07 62.0 149 28.2
FAN06G3626 Fragaria x ananassa HOM05D005770 ORTHO05D006702 2.4e-07 62.0 149 28.2
FAN06G3908 Fragaria x ananassa HOM05D005770 ORTHO05D006702 2.4e-07 62.0 149 28.2
Sc13g0008700 Simmondsia chinensis HOM05D005770 ORTHO05D006702 2.4e-07 62.0 152 27.0
THA.LOC104815678 Tarenaya hassleriana HOM05D005770 ORTHO05D006702 3.2e-07 61.6 149 26.2
CAN.G311.72 Capsicum annuum HOM05D000424 ORTHO05D000355 4.1e-07 61.2 125 27.2
Eucgr.A00778 Eucalyptus grandis HOM05D007661 ORTHO05D009671 4.1e-07 61.2 118 32.2
Nn1g08093 Nelumbo nucifera HOM05D007661 ORTHO05D009671 4.1e-07 61.2 153 23.5
PSO675G5494 Papaver somniferum HOM05D007409 ORTHO05D009264 4.1e-07 61.2 99 31.3
EL10Ac3g04919 Beta vulgaris HOM05D002444 ORTHO05D009235 5.4e-07 60.8 131 27.5
PSO541G6128 Papaver somniferum HOM05D007409 ORTHO05D009264 5.4e-07 60.8 72 36.1
TAR362G0078 Trochodendron aralioides HOM05D007661 ORTHO05D009671 5.4e-07 60.8 153 23.5
Manes.04G002700 Manihot esculenta HOM05D000424 ORTHO05D000355 7.1e-07 60.5 125 26.4
Aqoxy7G02204 Aquilegia oxysepala HOM05D000424 ORTHO05D000355 9.2e-07 60.1 136 27.2
ScUNg0000600 Simmondsia chinensis HOM05D005770 ORTHO05D006702 9.2e-07 60.1 114 29.8
Hma1.2p1_0013F.1_g008270 Hydrangea macrophylla HOM05D007409 ORTHO05D009264 1.2e-06 59.7 94 35.1
SGA_v2.0_scaffold54G19637 Striga asiatica HOM05D006400 ORTHO05D008039 1.2e-06 59.7 160 25.6
SEGI_34039 Sequoiadendron giganteum HOM05D000424 ORTHO05D000355 1.6e-06 59.3 180 24.4
TAR206G0004 Trochodendron aralioides HOM05D000424 ORTHO05D000355 1.6e-06 59.3 131 27.5
SHI14130 Sapria himalayana HOM05D002453 ORTHO05D002107 3.5e-06 58.2 133 27.8
ATR0697G201 Amborella trichopoda HOM05D006400 ORTHO05D008039 4.6e-06 57.8 139 27.3
SEGI_06598 Sequoiadendron giganteum HOM05D005973 ORTHO05D007285 4.6e-06 57.8 173 25.4
DCAR_031566 Daucus carota HOM05D005770 ORTHO05D006702 6.0e-06 57.4 149 26.2
MBI17_g12881_MAGBIO Magnolia biondii HOM05D007686 ORTHO05D009709 6.0e-06 57.4 129 25.6
PSO017G2364 Papaver somniferum HOM05D000424 ORTHO05D000355 6.0e-06 57.4 134 23.9
TPR.G14338 Trifolium pratense HOM05D005770 ORTHO05D006702 6.0e-06 57.4 120 28.3
BcaC07g39437 Brassica carinata HOM05D000424 ORTHO05D000355 7.8e-06 57.0 127 25.2
BolC8t50090H Brassica oleracea HOM05D000424 ORTHO05D000355 7.8e-06 57.0 127 25.2
CDE02G3572 Ceratophyllum demersum HOM05D004783 ORTHO05D005581 7.8e-06 57.0 157 27.4
Dinv43544 Davidia involucrata HOM05D000424 ORTHO05D000355 7.8e-06 57.0 126 25.4
Lalb_Chr23g0266001 Lupinus albus HOM05D000424 ORTHO05D000355 7.8e-06 57.0 68 30.9
Psat6g198600 Pisum sativum HOM05D005770 ORTHO05D006702 7.8e-06 57.0 120 28.3
TWI12G1155 Tripterygium wilfordii HOM05D000424 ORTHO05D000355 7.8e-06 57.0 128 24.2


User provided reference genes

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